RNA–Protein interactions for RNA: ENST00000569569.5

HERPUD1-218, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 2

Gene HERPUD1, Length 1,125 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-218ENST00000569569 NISCHQ9Y2I1 1504 aa33.63■■■□□ 2.97
HERPUD1-218ENST00000569569 CCDC180Q9P1Z9 1646 aa29.96■■■□□ 2.39
HERPUD1-218ENST00000569569 ABCC9O60706 1549 aa29.35■■■□□ 2.29
HERPUD1-218ENST00000569569 RB1CC1Q8TDY2 1594 aa28.23■■■□□ 2.11
HERPUD1-218ENST00000569569 NACADO15069 1562 aa28.18■■■□□ 2.1
HERPUD1-218ENST00000569569 DCAF8L2P0C7V8 631 aa28.16■■■□□ 2.1
HERPUD1-218ENST00000569569 MYO15BQ96JP2 1530 aa27.98■■■□□ 2.07
HERPUD1-218ENST00000569569 ZCCHC6Q5VYS8 1495 aaKnown RBP27.98■■■□□ 2.07
HERPUD1-218ENST00000569569 DCAF1Q9Y4B6 1507 aa27.83■■■□□ 2.05
HERPUD1-218ENST00000569569 UNC13AQ9UPW8 1703 aa27.65■■■□□ 2.02
HERPUD1-218ENST00000569569 PABPN1Q86U42 306 aaKnown RBP eCLIP27.42■■□□□ 1.98
HERPUD1-218ENST00000569569 BICRAQ9NZM4 1560 aa27.36■■□□□ 1.97
HERPUD1-218ENST00000569569 SCRIBQ14160 1630 aa27.3■■□□□ 1.96
HERPUD1-218ENST00000569569 SHROOM4Q9ULL8 1493 aa27.06■■□□□ 1.92
HERPUD1-218ENST00000569569 DNAJC5BQ9UF47 199 aa27.01■■□□□ 1.91
HERPUD1-218ENST00000569569 EIF4G1Q04637 1599 aaKnown RBP26.65■■□□□ 1.86
HERPUD1-218ENST00000569569 CC2D2AQ9P2K1 1620 aa26.57■■□□□ 1.84
HERPUD1-218ENST00000569569 CECR2Q9BXF3 1484 aa26.38■■□□□ 1.81
HERPUD1-218ENST00000569569 AEBP2Q6ZN18 517 aaPredicted RBP26.33■■□□□ 1.81
HERPUD1-218ENST00000569569 SMARCA4P51532 1647 aa26.13■■□□□ 1.77
HERPUD1-218ENST00000569569 BAZ1AQ9NRL2 1556 aaPredicted RBP26.08■■□□□ 1.77
HERPUD1-218ENST00000569569 NCAPD3P42695 1498 aa25.99■■□□□ 1.75
HERPUD1-218ENST00000569569 ATAD2BQ9ULI0 1458 aa25.98■■□□□ 1.75
HERPUD1-218ENST00000569569 SMARCA2P51531 1590 aa25.97■■□□□ 1.75
HERPUD1-218ENST00000569569 MROH2BQ7Z745 1585 aa25.91■■□□□ 1.74
HERPUD1-218ENST00000569569 PEG3Q9GZU2 1588 aa25.87■■□□□ 1.73
HERPUD1-218ENST00000569569 HMGXB3Q12766 1538 aa25.85■■□□□ 1.73
HERPUD1-218ENST00000569569 BAZ1BQ9UIG0 1483 aaKnown RBP25.77■■□□□ 1.72
HERPUD1-218ENST00000569569 WIZO95785 1651 aa25.66■■□□□ 1.7
HERPUD1-218ENST00000569569 RSF1Q96T23 1441 aaPredicted RBP25.59■■□□□ 1.69
HERPUD1-218ENST00000569569 NESP48681 1621 aa25.37■■□□□ 1.65
HERPUD1-218ENST00000569569 TOP2AP11388 1531 aaKnown RBP25.35■■□□□ 1.65
HERPUD1-218ENST00000569569 LAMC3Q9Y6N6 1575 aa25.33■■□□□ 1.65
HERPUD1-218ENST00000569569 ERCC6Q03468 1493 aa25.31■■□□□ 1.64
HERPUD1-218ENST00000569569 CADPSQ9ULU8 1353 aa25.23■■□□□ 1.63
HERPUD1-218ENST00000569569 PDS5BQ9NTI5 1447 aa25.16■■□□□ 1.62
HERPUD1-218ENST00000569569 KIF21AQ7Z4S6 1674 aa25.13■■□□□ 1.61
HERPUD1-218ENST00000569569 CUX2O14529 1486 aa25.08■■□□□ 1.6
HERPUD1-218ENST00000569569 CCDC88BA6NC98 1476 aa25.07■■□□□ 1.6
HERPUD1-218ENST00000569569 CFTRP13569 1480 aa25.06■■□□□ 1.6
HERPUD1-218ENST00000569569 THOC2Q8NI27 1593 aaKnown RBP25.01■■□□□ 1.59
HERPUD1-218ENST00000569569 PRDM2Q13029 1718 aa24.95■■□□□ 1.59
HERPUD1-218ENST00000569569 FANCD2Q9BXW9 1451 aa24.93■■□□□ 1.58
HERPUD1-218ENST00000569569 CEP164Q9UPV0 1460 aa24.91■■□□□ 1.58
HERPUD1-218ENST00000569569 SUPT5HO00267 1087 aaKnown RBP24.91■■□□□ 1.58
HERPUD1-218ENST00000569569 MRC2Q9UBG0 1479 aa24.89■■□□□ 1.57
HERPUD1-218ENST00000569569 WDR62O43379 1518 aa24.81■■□□□ 1.56
HERPUD1-218ENST00000569569 CHIC1Q5VXU3 224 aa24.77■■□□□ 1.56
HERPUD1-218ENST00000569569 URB2Q14146 1524 aaKnown RBP24.68■■□□□ 1.54
HERPUD1-218ENST00000569569 ABCC8Q09428 1581 aa24.55■■□□□ 1.52
HERPUD1-218ENST00000569569 TOPBP1Q92547 1522 aa24.53■■□□□ 1.52
HERPUD1-218ENST00000569569 DNMBPQ6XZF7 1577 aa24.5■■□□□ 1.51
HERPUD1-218ENST00000569569 DNAJC5Q9H3Z4 198 aa24.41■■□□□ 1.5
HERPUD1-218ENST00000569569 IFT140Q96RY7 1462 aa24.39■■□□□ 1.5
HERPUD1-218ENST00000569569 POLA1P09884 1462 aaPredicted RBP24.31■■□□□ 1.48
HERPUD1-218ENST00000569569 CUX1P39880 1505 aa24.3■■□□□ 1.48
HERPUD1-218ENST00000569569 ZNF608Q9ULD9 1512 aaPredicted RBP24.28■■□□□ 1.48
HERPUD1-218ENST00000569569 TARBP1Q13395 1621 aaKnown RBP24.28■■□□□ 1.48
HERPUD1-218ENST00000569569 FGD5Q6ZNL6 1462 aa24.24■■□□□ 1.47
HERPUD1-218ENST00000569569 SOGA1O94964 1423 aa24.23■■□□□ 1.47
HERPUD1-218ENST00000569569 RAD54L2Q9Y4B4 1467 aa24.2■■□□□ 1.47
HERPUD1-218ENST00000569569 EIF4G3O43432 1585 aaKnown RBP24.19■■□□□ 1.46
HERPUD1-218ENST00000569569 AQRO60306 1485 aaKnown RBP eCLIP24.14■■□□□ 1.464e-9■■■■■ 51.7
HERPUD1-218ENST00000569569 WRNQ14191 1432 aaPredicted RBP eCLIP24.13■■□□□ 1.45
HERPUD1-218ENST00000569569 BIVM-ERCC5R4GMW8 1640 aa24.12■■□□□ 1.45
HERPUD1-218ENST00000569569 TOP2BQ02880 1626 aa24.1■■□□□ 1.45
HERPUD1-218ENST00000569569 WDR97A6NE52 1622 aa24.1■■□□□ 1.45
HERPUD1-218ENST00000569569 TDRD9Q8NDG6 1382 aaKnown RBP24.08■■□□□ 1.45
HERPUD1-218ENST00000569569 SYNJ1O43426 1573 aa24.08■■□□□ 1.44
HERPUD1-218ENST00000569569 OSCARQ8IYS5 282 aa24.06■■□□□ 1.44
HERPUD1-218ENST00000569569 ABCA10Q8WWZ4 1543 aa24.01■■□□□ 1.43
HERPUD1-218ENST00000569569 CHD1O14646 1710 aa23.95■■□□□ 1.42
HERPUD1-218ENST00000569569 GRIN2BQ13224 1484 aa23.94■■□□□ 1.42
HERPUD1-218ENST00000569569 GAPVD1Q14C86 1478 aa23.94■■□□□ 1.42
HERPUD1-218ENST00000569569 PBRM1Q86U86 1689 aa23.93■■□□□ 1.42
HERPUD1-218ENST00000569569 ABCA5Q8WWZ7 1642 aa23.92■■□□□ 1.42
HERPUD1-218ENST00000569569 SNAPC4Q5SXM2 1469 aa23.9■■□□□ 1.42
HERPUD1-218ENST00000569569 MAGI1Q96QZ7 1491 aaPredicted RBP23.89■■□□□ 1.42
HERPUD1-218ENST00000569569 FBLN2P98095 1184 aa23.88■■□□□ 1.41
HERPUD1-218ENST00000569569 CHMP7Q8WUX9 453 aaPredicted RBP23.82■■□□□ 1.4
HERPUD1-218ENST00000569569 SYNJ2O15056 1496 aa23.8■■□□□ 1.4
HERPUD1-218ENST00000569569 ERICH3Q5RHP9 1530 aa23.74■■□□□ 1.39
HERPUD1-218ENST00000569569 ADAMTS12P58397 1594 aa23.69■■□□□ 1.38
HERPUD1-218ENST00000569569 FHAD1B1AJZ9 1412 aa23.66■■□□□ 1.38
HERPUD1-218ENST00000569569 RIMBP3CA6NJZ7 1639 aa23.66■■□□□ 1.38
HERPUD1-218ENST00000569569 RIMBP3BA6NNM3 1639 aa23.66■■□□□ 1.38
HERPUD1-218ENST00000569569 RIMBP3Q9UFD9 1639 aa23.66■■□□□ 1.38
HERPUD1-218ENST00000569569 KIF27Q86VH2 1401 aa23.65■■□□□ 1.38
HERPUD1-218ENST00000569569 ARHGEF11O15085 1522 aa23.63■■□□□ 1.37
HERPUD1-218ENST00000569569 CLASP1Q7Z460 1538 aa23.63■■□□□ 1.37
HERPUD1-218ENST00000569569 GRIN2AQ12879 1464 aa23.62■■□□□ 1.37
HERPUD1-218ENST00000569569 IGF1RP08069 1367 aa23.56■■□□□ 1.36
HERPUD1-218ENST00000569569 TRIM41Q8WV44 630 aa23.56■■□□□ 1.36
HERPUD1-218ENST00000569569 NUP160Q12769 1436 aa23.52■■□□□ 1.36
HERPUD1-218ENST00000569569 CUL7Q14999 1698 aa23.52■■□□□ 1.36
HERPUD1-218ENST00000569569 CEP170Q5SW79 1584 aa23.51■■□□□ 1.35
HERPUD1-218ENST00000569569 CYB5RLQ6IPT4 315 aa23.44■■□□□ 1.34
HERPUD1-218ENST00000569569 CARMIL1Q5VZK9 1371 aa23.42■■□□□ 1.34
HERPUD1-218ENST00000569569 ARAP1Q96P48 1450 aa23.42■■□□□ 1.34
HERPUD1-218ENST00000569569 RUSC2Q8N2Y8 1516 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms