RNA–Protein interactions for RNA: ENST00000569429.5

HERPUD1-217, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 562 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-217ENST00000569429 NISCHQ9Y2I1 1504 aa17.75■□□□□ 0.43
HERPUD1-217ENST00000569429 ABCC9O60706 1549 aa17.08■□□□□ 0.32
HERPUD1-217ENST00000569429 DNAJC5BQ9UF47 199 aa16.82■□□□□ 0.28
HERPUD1-217ENST00000569429 CCDC180Q9P1Z9 1646 aa16.35■□□□□ 0.21
HERPUD1-217ENST00000569429 DNAJC5Q9H3Z4 198 aa16.1■□□□□ 0.17
HERPUD1-217ENST00000569429 RB1CC1Q8TDY2 1594 aa15.95■□□□□ 0.14
HERPUD1-217ENST00000569429 PABPN1Q86U42 306 aaKnown RBP eCLIP15.74■□□□□ 0.11
HERPUD1-217ENST00000569429 UNC13AQ9UPW8 1703 aa15.66■□□□□ 0.1
HERPUD1-217ENST00000569429 NACADO15069 1562 aa15.65■□□□□ 0.1
HERPUD1-217ENST00000569429 BICRAQ9NZM4 1560 aa15.52■□□□□ 0.07
HERPUD1-217ENST00000569429 CECR2Q9BXF3 1484 aa15.51■□□□□ 0.07
HERPUD1-217ENST00000569429 CC2D2AQ9P2K1 1620 aa15.44■□□□□ 0.06
HERPUD1-217ENST00000569429 SHROOM4Q9ULL8 1493 aa15.25■□□□□ 0.03
HERPUD1-217ENST00000569429 DCAF8L2P0C7V8 631 aa15.24■□□□□ 0.03
HERPUD1-217ENST00000569429 EIF4G1Q04637 1599 aaKnown RBP15.19■□□□□ 0.02
HERPUD1-217ENST00000569429 MYO15BQ96JP2 1530 aa15.18■□□□□ 0.02
HERPUD1-217ENST00000569429 CUX2O14529 1486 aa15.14■□□□□ 0.01
HERPUD1-217ENST00000569429 TRIM41Q8WV44 630 aa14.94□□□□□ -0.02
HERPUD1-217ENST00000569429 ERCC6Q03468 1493 aa14.81□□□□□ -0.04
HERPUD1-217ENST00000569429 SCRIBQ14160 1630 aa14.76□□□□□ -0.05
HERPUD1-217ENST00000569429 DCAF1Q9Y4B6 1507 aa14.66□□□□□ -0.06
HERPUD1-217ENST00000569429 ZCCHC6Q5VYS8 1495 aaKnown RBP14.52□□□□□ -0.08
HERPUD1-217ENST00000569429 THOC2Q8NI27 1593 aaKnown RBP14.51□□□□□ -0.09
HERPUD1-217ENST00000569429 NCAPD3P42695 1498 aa14.44□□□□□ -0.1
HERPUD1-217ENST00000569429 NESP48681 1621 aa14.44□□□□□ -0.1
HERPUD1-217ENST00000569429 AEBP2Q6ZN18 517 aaPredicted RBP14.3□□□□□ -0.12
HERPUD1-217ENST00000569429 BAZ1AQ9NRL2 1556 aaPredicted RBP14.29□□□□□ -0.12
HERPUD1-217ENST00000569429 SMARCA2P51531 1590 aa14.28□□□□□ -0.12
HERPUD1-217ENST00000569429 OSCARQ8IYS5 282 aa14.28□□□□□ -0.12
HERPUD1-217ENST00000569429 KIF21AQ7Z4S6 1674 aa14.27□□□□□ -0.12
HERPUD1-217ENST00000569429 LAMC3Q9Y6N6 1575 aa14.26□□□□□ -0.13
HERPUD1-217ENST00000569429 HMGXB3Q12766 1538 aa14.25□□□□□ -0.13
HERPUD1-217ENST00000569429 ATAD2BQ9ULI0 1458 aa14.25□□□□□ -0.13
HERPUD1-217ENST00000569429 RIMBP3CA6NJZ7 1639 aa14.2□□□□□ -0.14
HERPUD1-217ENST00000569429 RIMBP3BA6NNM3 1639 aa14.2□□□□□ -0.14
HERPUD1-217ENST00000569429 RIMBP3Q9UFD9 1639 aa14.2□□□□□ -0.14
HERPUD1-217ENST00000569429 PDS5BQ9NTI5 1447 aa14.18□□□□□ -0.14
HERPUD1-217ENST00000569429 WDR62O43379 1518 aa14.12□□□□□ -0.15
HERPUD1-217ENST00000569429 MRC2Q9UBG0 1479 aa14.1□□□□□ -0.15
HERPUD1-217ENST00000569429 TRHP20396 242 aaPredicted RBP14.07□□□□□ -0.16
HERPUD1-217ENST00000569429 ARHGEF11O15085 1522 aa14.05□□□□□ -0.16
HERPUD1-217ENST00000569429 BAZ1BQ9UIG0 1483 aaKnown RBP14.05□□□□□ -0.16
HERPUD1-217ENST00000569429 SMARCA4P51532 1647 aa14.03□□□□□ -0.16
HERPUD1-217ENST00000569429 CYB5RLQ6IPT4 315 aa13.97□□□□□ -0.17
HERPUD1-217ENST00000569429 PEG3Q9GZU2 1588 aa13.95□□□□□ -0.18
HERPUD1-217ENST00000569429 CADPSQ9ULU8 1353 aa13.95□□□□□ -0.18
HERPUD1-217ENST00000569429 ILDR1Q86SU0 546 aaPredicted RBP13.87□□□□□ -0.19
HERPUD1-217ENST00000569429 CEP164Q9UPV0 1460 aa13.86□□□□□ -0.19
HERPUD1-217ENST00000569429 ARAP1Q96P48 1450 aa13.85□□□□□ -0.19
HERPUD1-217ENST00000569429 FANCD2Q9BXW9 1451 aa13.77□□□□□ -0.21
HERPUD1-217ENST00000569429 RSF1Q96T23 1441 aaPredicted RBP13.72□□□□□ -0.21
HERPUD1-217ENST00000569429 URB2Q14146 1524 aaKnown RBP13.71□□□□□ -0.21
HERPUD1-217ENST00000569429 CHD1O14646 1710 aa13.67□□□□□ -0.22
HERPUD1-217ENST00000569429 ZNF608Q9ULD9 1512 aaPredicted RBP13.67□□□□□ -0.22
HERPUD1-217ENST00000569429 MROH2BQ7Z745 1585 aa13.64□□□□□ -0.23
HERPUD1-217ENST00000569429 IFT140Q96RY7 1462 aa13.63□□□□□ -0.23
HERPUD1-217ENST00000569429 CFTRP13569 1480 aa13.61□□□□□ -0.23
HERPUD1-217ENST00000569429 EIF4G3O43432 1585 aaKnown RBP13.58□□□□□ -0.24
HERPUD1-217ENST00000569429 PRDM2Q13029 1718 aa13.49□□□□□ -0.25
HERPUD1-217ENST00000569429 CLASP1Q7Z460 1538 aa13.48□□□□□ -0.25
HERPUD1-217ENST00000569429 FBLN2P98095 1184 aa13.47□□□□□ -0.25
HERPUD1-217ENST00000569429 WIZO95785 1651 aa13.46□□□□□ -0.26
HERPUD1-217ENST00000569429 AQRO60306 1485 aaKnown RBP eCLIP13.44□□□□□ -0.266e-8■■■■■ 39.9
HERPUD1-217ENST00000569429 KDM4FA0A1W2PPD8 638 aa13.43□□□□□ -0.26
HERPUD1-217ENST00000569429 TOPBP1Q92547 1522 aa13.43□□□□□ -0.26
HERPUD1-217ENST00000569429 TARBP1Q13395 1621 aaKnown RBP13.39□□□□□ -0.27
HERPUD1-217ENST00000569429 KIF13AQ9H1H9 1805 aa13.39□□□□□ -0.27
HERPUD1-217ENST00000569429 SYNJ1O43426 1573 aa13.38□□□□□ -0.27
HERPUD1-217ENST00000569429 GAPVD1Q14C86 1478 aa13.38□□□□□ -0.27
HERPUD1-217ENST00000569429 ABCC8Q09428 1581 aa13.37□□□□□ -0.27
HERPUD1-217ENST00000569429 DNMBPQ6XZF7 1577 aa13.31□□□□□ -0.28
HERPUD1-217ENST00000569429 ERCC6L2Q5T890 1561 aa13.3□□□□□ -0.28
HERPUD1-217ENST00000569429 CHMP7Q8WUX9 453 aaPredicted RBP13.27□□□□□ -0.29
HERPUD1-217ENST00000569429 SNAPC4Q5SXM2 1469 aa13.27□□□□□ -0.29
HERPUD1-217ENST00000569429 FBXO41Q8TF61 875 aa13.25□□□□□ -0.29
HERPUD1-217ENST00000569429 MAGI1Q96QZ7 1491 aaPredicted RBP13.24□□□□□ -0.29
HERPUD1-217ENST00000569429 WDR97A6NE52 1622 aa13.24□□□□□ -0.29
HERPUD1-217ENST00000569429 POLA1P09884 1462 aaPredicted RBP13.23□□□□□ -0.29
HERPUD1-217ENST00000569429 TOP2AP11388 1531 aaKnown RBP13.22□□□□□ -0.29
HERPUD1-217ENST00000569429 HECW2Q9P2P5 1572 aa13.21□□□□□ -0.29
HERPUD1-217ENST00000569429 TDRD9Q8NDG6 1382 aaKnown RBP13.2□□□□□ -0.3
HERPUD1-217ENST00000569429 SYNJ2O15056 1496 aa13.2□□□□□ -0.3
HERPUD1-217ENST00000569429 KDM6BO15054 1643 aa13.18□□□□□ -0.3
HERPUD1-217ENST00000569429 RAD54L2Q9Y4B4 1467 aa13.16□□□□□ -0.3
HERPUD1-217ENST00000569429 LMTK3Q96Q04 1460 aa13.15□□□□□ -0.3
HERPUD1-217ENST00000569429 SOGA1O94964 1423 aa13.14□□□□□ -0.31
HERPUD1-217ENST00000569429 ABCC10Q5T3U5 1492 aa13.14□□□□□ -0.31
HERPUD1-217ENST00000569429 GRIN2BQ13224 1484 aa13.13□□□□□ -0.31
HERPUD1-217ENST00000569429 FAM69CQ0P6D2 419 aa13.12□□□□□ -0.31
HERPUD1-217ENST00000569429 ADGRL1O94910 1474 aa13.1□□□□□ -0.31
HERPUD1-217ENST00000569429 SOCS7O14512 581 aa13.08□□□□□ -0.32
HERPUD1-217ENST00000569429 TSPOAP1O95153 1857 aa13.08□□□□□ -0.32
HERPUD1-217ENST00000569429 CEP170Q5SW79 1584 aa13.07□□□□□ -0.32
HERPUD1-217ENST00000569429 DIP2BQ9P265 1576 aa13.07□□□□□ -0.32
HERPUD1-217ENST00000569429 CCDC88BA6NC98 1476 aa13.07□□□□□ -0.32
HERPUD1-217ENST00000569429 PBRM1Q86U86 1689 aa13.06□□□□□ -0.32
HERPUD1-217ENST00000569429 SHROOM2Q13796 1616 aa13.05□□□□□ -0.32
HERPUD1-217ENST00000569429 MAPKBP1O60336 1514 aa13.04□□□□□ -0.32
HERPUD1-217ENST00000569429 FGD5Q6ZNL6 1462 aa13.01□□□□□ -0.33
HERPUD1-217ENST00000569429 ILDR2Q71H61 639 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms