RNA–Protein interactions for RNA: ENST00000569140.1

CDT1-203, Transcript of chromatin licensing and DNA replication factor 1, humanhuman

TSL 3

Gene CDT1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1-203ENST00000569140 NISCHQ9Y2I1 1504 aa30.82■■■□□ 2.52
CDT1-203ENST00000569140 CCDC180Q9P1Z9 1646 aa27.38■■□□□ 1.97
CDT1-203ENST00000569140 ABCC9O60706 1549 aa26.79■■□□□ 1.88
CDT1-203ENST00000569140 DCAF8L2P0C7V8 631 aa25.88■■□□□ 1.73
CDT1-203ENST00000569140 RB1CC1Q8TDY2 1594 aa25.77■■□□□ 1.72
CDT1-203ENST00000569140 NACADO15069 1562 aa25.7■■□□□ 1.71
CDT1-203ENST00000569140 ZCCHC6Q5VYS8 1495 aaKnown RBP25.69■■□□□ 1.7
CDT1-203ENST00000569140 MYO15BQ96JP2 1530 aa25.49■■□□□ 1.67
CDT1-203ENST00000569140 DCAF1Q9Y4B6 1507 aa25.43■■□□□ 1.66
CDT1-203ENST00000569140 UNC13AQ9UPW8 1703 aa25.17■■□□□ 1.62
CDT1-203ENST00000569140 SCRIBQ14160 1630 aa25.09■■□□□ 1.61
CDT1-203ENST00000569140 PABPN1Q86U42 306 aaKnown RBP eCLIP25.05■■□□□ 1.6
CDT1-203ENST00000569140 BICRAQ9NZM4 1560 aa24.92■■□□□ 1.58
CDT1-203ENST00000569140 SHROOM4Q9ULL8 1493 aa24.64■■□□□ 1.53
CDT1-203ENST00000569140 DNAJC5BQ9UF47 199 aa24.42■■□□□ 1.5
CDT1-203ENST00000569140 EIF4G1Q04637 1599 aaKnown RBP24.3■■□□□ 1.48
CDT1-203ENST00000569140 CC2D2AQ9P2K1 1620 aa24.21■■□□□ 1.47
CDT1-203ENST00000569140 CECR2Q9BXF3 1484 aa24.03■■□□□ 1.44
CDT1-203ENST00000569140 SMARCA4P51532 1647 aa23.93■■□□□ 1.42
CDT1-203ENST00000569140 BAZ1AQ9NRL2 1556 aaPredicted RBP23.91■■□□□ 1.42
CDT1-203ENST00000569140 MROH2BQ7Z745 1585 aa23.78■■□□□ 1.4
CDT1-203ENST00000569140 ATAD2BQ9ULI0 1458 aa23.75■■□□□ 1.39
CDT1-203ENST00000569140 SMARCA2P51531 1590 aa23.74■■□□□ 1.39
CDT1-203ENST00000569140 NCAPD3P42695 1498 aa23.68■■□□□ 1.38
CDT1-203ENST00000569140 BAZ1BQ9UIG0 1483 aaKnown RBP23.62■■□□□ 1.37
CDT1-203ENST00000569140 PEG3Q9GZU2 1588 aa23.61■■□□□ 1.37
CDT1-203ENST00000569140 HMGXB3Q12766 1538 aa23.61■■□□□ 1.37
CDT1-203ENST00000569140 WIZO95785 1651 aa23.57■■□□□ 1.36
CDT1-203ENST00000569140 RSF1Q96T23 1441 aaPredicted RBP23.5■■□□□ 1.35
CDT1-203ENST00000569140 TOP2AP11388 1531 aaKnown RBP23.29■■□□□ 1.32
CDT1-203ENST00000569140 NESP48681 1621 aa23.19■■□□□ 1.3
CDT1-203ENST00000569140 ERCC6Q03468 1493 aa23.12■■□□□ 1.29
CDT1-203ENST00000569140 SUPT5HO00267 1087 aaKnown RBP23.11■■□□□ 1.29
CDT1-203ENST00000569140 LAMC3Q9Y6N6 1575 aa23.1■■□□□ 1.29
CDT1-203ENST00000569140 CADPSQ9ULU8 1353 aa23.03■■□□□ 1.28
CDT1-203ENST00000569140 CCDC88BA6NC98 1476 aa23■■□□□ 1.27
CDT1-203ENST00000569140 PDS5BQ9NTI5 1447 aa22.96■■□□□ 1.27
CDT1-203ENST00000569140 KIF21AQ7Z4S6 1674 aa22.93■■□□□ 1.26
CDT1-203ENST00000569140 CFTRP13569 1480 aa22.9■■□□□ 1.26
CDT1-203ENST00000569140 FANCD2Q9BXW9 1451 aa22.82■■□□□ 1.24
CDT1-203ENST00000569140 THOC2Q8NI27 1593 aaKnown RBP22.8■■□□□ 1.24
CDT1-203ENST00000569140 PRDM2Q13029 1718 aa22.79■■□□□ 1.24
CDT1-203ENST00000569140 CEP164Q9UPV0 1460 aa22.79■■□□□ 1.24
CDT1-203ENST00000569140 CUX2O14529 1486 aa22.75■■□□□ 1.23
CDT1-203ENST00000569140 MRC2Q9UBG0 1479 aa22.73■■□□□ 1.23
CDT1-203ENST00000569140 WDR62O43379 1518 aa22.62■■□□□ 1.21
CDT1-203ENST00000569140 URB2Q14146 1524 aaKnown RBP22.57■■□□□ 1.2
CDT1-203ENST00000569140 TOPBP1Q92547 1522 aa22.45■■□□□ 1.18
CDT1-203ENST00000569140 DNMBPQ6XZF7 1577 aa22.43■■□□□ 1.18
CDT1-203ENST00000569140 ABCC8Q09428 1581 aa22.42■■□□□ 1.18
CDT1-203ENST00000569140 CUX1P39880 1505 aa22.31■■□□□ 1.16
CDT1-203ENST00000569140 IFT140Q96RY7 1462 aa22.28■■□□□ 1.16
CDT1-203ENST00000569140 POLA1P09884 1462 aaPredicted RBP22.25■■□□□ 1.15
CDT1-203ENST00000569140 FGD5Q6ZNL6 1462 aa22.24■■□□□ 1.15
CDT1-203ENST00000569140 WRNQ14191 1432 aaPredicted RBP eCLIP22.21■■□□□ 1.15
CDT1-203ENST00000569140 RAD54L2Q9Y4B4 1467 aa22.19■■□□□ 1.14
CDT1-203ENST00000569140 ZNF608Q9ULD9 1512 aaPredicted RBP22.19■■□□□ 1.14
CDT1-203ENST00000569140 SOGA1O94964 1423 aa22.18■■□□□ 1.14
CDT1-203ENST00000569140 TARBP1Q13395 1621 aaKnown RBP22.17■■□□□ 1.14
CDT1-203ENST00000569140 SYNJ1O43426 1573 aa22.16■■□□□ 1.14
CDT1-203ENST00000569140 TOP2BQ02880 1626 aa22.13■■□□□ 1.13
CDT1-203ENST00000569140 EIF4G3O43432 1585 aaKnown RBP22.13■■□□□ 1.13
CDT1-203ENST00000569140 BIVM-ERCC5R4GMW8 1640 aa22.13■■□□□ 1.13
CDT1-203ENST00000569140 AQRO60306 1485 aaKnown RBP eCLIP22.09■■□□□ 1.135e-9■■■■■ 37.1
CDT1-203ENST00000569140 TDRD9Q8NDG6 1382 aaKnown RBP22.06■■□□□ 1.12
CDT1-203ENST00000569140 WDR97A6NE52 1622 aa22.03■■□□□ 1.12
CDT1-203ENST00000569140 ABCA10Q8WWZ4 1543 aa21.99■■□□□ 1.11
CDT1-203ENST00000569140 GAPVD1Q14C86 1478 aa21.93■■□□□ 1.1
CDT1-203ENST00000569140 DNAJC5Q9H3Z4 198 aa21.93■■□□□ 1.1
CDT1-203ENST00000569140 PBRM1Q86U86 1689 aa21.92■■□□□ 1.1
CDT1-203ENST00000569140 SNAPC4Q5SXM2 1469 aa21.91■■□□□ 1.1
CDT1-203ENST00000569140 ABCA5Q8WWZ7 1642 aa21.91■■□□□ 1.1
CDT1-203ENST00000569140 GRIN2BQ13224 1484 aa21.9■■□□□ 1.1
CDT1-203ENST00000569140 FBLN2P98095 1184 aa21.9■■□□□ 1.1
CDT1-203ENST00000569140 CHD1O14646 1710 aa21.86■■□□□ 1.09
CDT1-203ENST00000569140 OSCARQ8IYS5 282 aa21.84■■□□□ 1.09
CDT1-203ENST00000569140 MAGI1Q96QZ7 1491 aaPredicted RBP21.83■■□□□ 1.09
CDT1-203ENST00000569140 CHMP7Q8WUX9 453 aaPredicted RBP21.79■■□□□ 1.08
CDT1-203ENST00000569140 TRIM41Q8WV44 630 aa21.78■■□□□ 1.08
CDT1-203ENST00000569140 SYNJ2O15056 1496 aa21.75■■□□□ 1.07
CDT1-203ENST00000569140 KIF27Q86VH2 1401 aa21.74■■□□□ 1.07
CDT1-203ENST00000569140 ERICH3Q5RHP9 1530 aa21.73■■□□□ 1.07
CDT1-203ENST00000569140 ADAMTS12P58397 1594 aa21.73■■□□□ 1.07
CDT1-203ENST00000569140 FHAD1B1AJZ9 1412 aa21.66■■□□□ 1.06
CDT1-203ENST00000569140 GRIN2AQ12879 1464 aa21.63■■□□□ 1.05
CDT1-203ENST00000569140 CUL7Q14999 1698 aa21.59■■□□□ 1.05
CDT1-203ENST00000569140 IGF1RP08069 1367 aa21.58■■□□□ 1.04
CDT1-203ENST00000569140 RUSC2Q8N2Y8 1516 aa21.56■■□□□ 1.04
CDT1-203ENST00000569140 CLASP1Q7Z460 1538 aa21.55■■□□□ 1.04
CDT1-203ENST00000569140 CEP170Q5SW79 1584 aa21.53■■□□□ 1.04
CDT1-203ENST00000569140 RIMBP3CA6NJZ7 1639 aa21.51■■□□□ 1.03
CDT1-203ENST00000569140 RIMBP3BA6NNM3 1639 aa21.51■■□□□ 1.03
CDT1-203ENST00000569140 RIMBP3Q9UFD9 1639 aa21.51■■□□□ 1.03
CDT1-203ENST00000569140 CHIC1Q5VXU3 224 aa21.51■■□□□ 1.03
CDT1-203ENST00000569140 CARMIL1Q5VZK9 1371 aa21.5■■□□□ 1.03
CDT1-203ENST00000569140 ARHGEF11O15085 1522 aa21.5■■□□□ 1.03
CDT1-203ENST00000569140 NUP160Q12769 1436 aa21.48■■□□□ 1.03
CDT1-203ENST00000569140 FAM9AQ8IZU1 332 aaPredicted RBP21.4■■□□□ 1.02
CDT1-203ENST00000569140 RAPGEF2Q9Y4G8 1499 aa21.39■■□□□ 1.02
CDT1-203ENST00000569140 EEA1Q15075 1411 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 246.6 ms