RNA–Protein interactions for RNA: ENST00000569122.1

SMG1-216, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 562 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-216ENST00000569122 NISCHQ9Y2I1 1504 aa22.04■■□□□ 1.12
SMG1-216ENST00000569122 ABCC9O60706 1549 aa20.37■□□□□ 0.85
SMG1-216ENST00000569122 CCDC180Q9P1Z9 1646 aa19.88■□□□□ 0.77
SMG1-216ENST00000569122 DNAJC5BQ9UF47 199 aa19.53■□□□□ 0.72
SMG1-216ENST00000569122 RB1CC1Q8TDY2 1594 aa19.23■□□□□ 0.67
SMG1-216ENST00000569122 NACADO15069 1562 aa19.02■□□□□ 0.64
SMG1-216ENST00000569122 PABPN1Q86U42 306 aaKnown RBP eCLIP18.97■□□□□ 0.63
SMG1-216ENST00000569122 DCAF8L2P0C7V8 631 aa18.93■□□□□ 0.62
SMG1-216ENST00000569122 MYO15BQ96JP2 1530 aa18.66■□□□□ 0.58
SMG1-216ENST00000569122 BICRAQ9NZM4 1560 aa18.57■□□□□ 0.56
SMG1-216ENST00000569122 UNC13AQ9UPW8 1703 aa18.5■□□□□ 0.55
SMG1-216ENST00000569122 SHROOM4Q9ULL8 1493 aa18.48■□□□□ 0.55
SMG1-216ENST00000569122 CECR2Q9BXF3 1484 aa18.46■□□□□ 0.55
SMG1-216ENST00000569122 DNAJC5Q9H3Z4 198 aa18.39■□□□□ 0.53
SMG1-216ENST00000569122 CC2D2AQ9P2K1 1620 aa18.34■□□□□ 0.53
SMG1-216ENST00000569122 DCAF1Q9Y4B6 1507 aa18.22■□□□□ 0.51
SMG1-216ENST00000569122 EIF4G1Q04637 1599 aaKnown RBP18.21■□□□□ 0.51
SMG1-216ENST00000569122 ZCCHC6Q5VYS8 1495 aaKnown RBP18.14■□□□□ 0.5
SMG1-216ENST00000569122 SCRIBQ14160 1630 aa18.06■□□□□ 0.48
SMG1-216ENST00000569122 CUX2O14529 1486 aa17.84■□□□□ 0.45
SMG1-216ENST00000569122 ERCC6Q03468 1493 aa17.72■□□□□ 0.43
SMG1-216ENST00000569122 NCAPD3P42695 1498 aa17.61■□□□□ 0.41
SMG1-216ENST00000569122 ATAD2BQ9ULI0 1458 aa17.44■□□□□ 0.38
SMG1-216ENST00000569122 SMARCA2P51531 1590 aa17.39■□□□□ 0.37
SMG1-216ENST00000569122 HMGXB3Q12766 1538 aa17.36■□□□□ 0.37
SMG1-216ENST00000569122 TRIM41Q8WV44 630 aa17.35■□□□□ 0.37
SMG1-216ENST00000569122 NESP48681 1621 aa17.32■□□□□ 0.36
SMG1-216ENST00000569122 PDS5BQ9NTI5 1447 aa17.26■□□□□ 0.35
SMG1-216ENST00000569122 BAZ1BQ9UIG0 1483 aaKnown RBP17.25■□□□□ 0.35
SMG1-216ENST00000569122 SMARCA4P51532 1647 aa17.21■□□□□ 0.35
SMG1-216ENST00000569122 LAMC3Q9Y6N6 1575 aa17.21■□□□□ 0.35
SMG1-216ENST00000569122 THOC2Q8NI27 1593 aaKnown RBP17.19■□□□□ 0.34
SMG1-216ENST00000569122 BAZ1AQ9NRL2 1556 aaPredicted RBP17.15■□□□□ 0.34
SMG1-216ENST00000569122 PEG3Q9GZU2 1588 aa17.1■□□□□ 0.33
SMG1-216ENST00000569122 CADPSQ9ULU8 1353 aa17.07■□□□□ 0.32
SMG1-216ENST00000569122 OSCARQ8IYS5 282 aa17.06■□□□□ 0.32
SMG1-216ENST00000569122 MRC2Q9UBG0 1479 aa17.03■□□□□ 0.32
SMG1-216ENST00000569122 KIF21AQ7Z4S6 1674 aa16.97■□□□□ 0.31
SMG1-216ENST00000569122 WDR62O43379 1518 aa16.96■□□□□ 0.3
SMG1-216ENST00000569122 MROH2BQ7Z745 1585 aa16.92■□□□□ 0.3
SMG1-216ENST00000569122 CEP164Q9UPV0 1460 aa16.88■□□□□ 0.29
SMG1-216ENST00000569122 FANCD2Q9BXW9 1451 aa16.81■□□□□ 0.28
SMG1-216ENST00000569122 CFTRP13569 1480 aa16.74■□□□□ 0.27
SMG1-216ENST00000569122 URB2Q14146 1524 aaKnown RBP16.64■□□□□ 0.25
SMG1-216ENST00000569122 CYB5RLQ6IPT4 315 aa16.63■□□□□ 0.25
SMG1-216ENST00000569122 RIMBP3CA6NJZ7 1639 aa16.63■□□□□ 0.25
SMG1-216ENST00000569122 RIMBP3BA6NNM3 1639 aa16.63■□□□□ 0.25
SMG1-216ENST00000569122 RIMBP3Q9UFD9 1639 aa16.63■□□□□ 0.25
SMG1-216ENST00000569122 TRHP20396 242 aaPredicted RBP16.62■□□□□ 0.25
SMG1-216ENST00000569122 WIZO95785 1651 aa16.62■□□□□ 0.25
SMG1-216ENST00000569122 IFT140Q96RY7 1462 aa16.6■□□□□ 0.25
SMG1-216ENST00000569122 ARHGEF11O15085 1522 aa16.6■□□□□ 0.25
SMG1-216ENST00000569122 AEBP2Q6ZN18 517 aaPredicted RBP16.52■□□□□ 0.24
SMG1-216ENST00000569122 ZNF608Q9ULD9 1512 aaPredicted RBP16.5■□□□□ 0.23
SMG1-216ENST00000569122 RSF1Q96T23 1441 aaPredicted RBP16.49■□□□□ 0.23
SMG1-216ENST00000569122 ABCC8Q09428 1581 aa16.48■□□□□ 0.23
SMG1-216ENST00000569122 TOP2AP11388 1531 aaKnown RBP16.48■□□□□ 0.23
SMG1-216ENST00000569122 FBLN2P98095 1184 aa16.44■□□□□ 0.22
SMG1-216ENST00000569122 TOPBP1Q92547 1522 aa16.41■□□□□ 0.22
SMG1-216ENST00000569122 ARAP1Q96P48 1450 aa16.39■□□□□ 0.21
SMG1-216ENST00000569122 AQRO60306 1485 aaKnown RBP eCLIP16.35■□□□□ 0.21
SMG1-216ENST00000569122 EIF4G3O43432 1585 aaKnown RBP16.34■□□□□ 0.21
SMG1-216ENST00000569122 CCDC88BA6NC98 1476 aa16.33■□□□□ 0.2
SMG1-216ENST00000569122 DNMBPQ6XZF7 1577 aa16.3■□□□□ 0.2
SMG1-216ENST00000569122 CHMP7Q8WUX9 453 aaPredicted RBP16.29■□□□□ 0.2
SMG1-216ENST00000569122 PRDM2Q13029 1718 aa16.28■□□□□ 0.2
SMG1-216ENST00000569122 TARBP1Q13395 1621 aaKnown RBP16.23■□□□□ 0.19
SMG1-216ENST00000569122 POLA1P09884 1462 aaPredicted RBP16.22■□□□□ 0.19
SMG1-216ENST00000569122 SOGA1O94964 1423 aa16.22■□□□□ 0.19
SMG1-216ENST00000569122 TDRD9Q8NDG6 1382 aaKnown RBP16.22■□□□□ 0.19
SMG1-216ENST00000569122 CHD1O14646 1710 aa16.22■□□□□ 0.19
SMG1-216ENST00000569122 SYNJ1O43426 1573 aa16.17■□□□□ 0.18
SMG1-216ENST00000569122 SNAPC4Q5SXM2 1469 aa16.16■□□□□ 0.18
SMG1-216ENST00000569122 MAGI1Q96QZ7 1491 aaPredicted RBP16.16■□□□□ 0.18
SMG1-216ENST00000569122 RAD54L2Q9Y4B4 1467 aa16.15■□□□□ 0.18
SMG1-216ENST00000569122 WDR97A6NE52 1622 aa16.14■□□□□ 0.17
SMG1-216ENST00000569122 CLASP1Q7Z460 1538 aa16.14■□□□□ 0.17
SMG1-216ENST00000569122 GRIN2BQ13224 1484 aa16.12■□□□□ 0.17
SMG1-216ENST00000569122 SYNJ2O15056 1496 aa16.1■□□□□ 0.17
SMG1-216ENST00000569122 GAPVD1Q14C86 1478 aa16.09■□□□□ 0.17
SMG1-216ENST00000569122 FGD5Q6ZNL6 1462 aa16.04■□□□□ 0.16
SMG1-216ENST00000569122 CUX1P39880 1505 aa15.93■□□□□ 0.14
SMG1-216ENST00000569122 ABCA10Q8WWZ4 1543 aa15.89■□□□□ 0.13
SMG1-216ENST00000569122 NPM1P06748 294 aaKnown RBP eCLIP15.87■□□□□ 0.13
SMG1-216ENST00000569122 GRIN2AQ12879 1464 aa15.86■□□□□ 0.13
SMG1-216ENST00000569122 NUP160Q12769 1436 aa15.85■□□□□ 0.13
SMG1-216ENST00000569122 FAM69CQ0P6D2 419 aa15.82■□□□□ 0.12
SMG1-216ENST00000569122 WRNQ14191 1432 aaPredicted RBP eCLIP15.81■□□□□ 0.12
SMG1-216ENST00000569122 CEP170Q5SW79 1584 aa15.8■□□□□ 0.12
SMG1-216ENST00000569122 FHAD1B1AJZ9 1412 aa15.8■□□□□ 0.12
SMG1-216ENST00000569122 PBRM1Q86U86 1689 aa15.79■□□□□ 0.12
SMG1-216ENST00000569122 JPH4Q96JJ6 628 aa15.79■□□□□ 0.12
SMG1-216ENST00000569122 ERCC6L2Q5T890 1561 aa15.79■□□□□ 0.12
SMG1-216ENST00000569122 ABCA5Q8WWZ7 1642 aa15.78■□□□□ 0.12
SMG1-216ENST00000569122 PRG4Q92954 1404 aaPredicted RBP15.76■□□□□ 0.11
SMG1-216ENST00000569122 ABCC10Q5T3U5 1492 aa15.75■□□□□ 0.11
SMG1-216ENST00000569122 KDM4FA0A1W2PPD8 638 aa15.72■□□□□ 0.11
SMG1-216ENST00000569122 ILDR1Q86SU0 546 aaPredicted RBP15.72■□□□□ 0.11
SMG1-216ENST00000569122 SHROOM2Q13796 1616 aa15.72■□□□□ 0.11
SMG1-216ENST00000569122 ADAMTS12P58397 1594 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms