RNA–Protein interactions for RNA: ENST00000568459.5

PKM-220, Transcript of pyruvate kinase M1/2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PKM, Length 1,806 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKM-220ENST00000568459 NISCHQ9Y2I1 1504 aa32.18■■■□□ 2.74
PKM-220ENST00000568459 CCDC180Q9P1Z9 1646 aa28.73■■■□□ 2.19
PKM-220ENST00000568459 ABCC9O60706 1549 aa28.38■■■□□ 2.13
PKM-220ENST00000568459 RB1CC1Q8TDY2 1594 aa27.19■■□□□ 1.94
PKM-220ENST00000568459 DCAF8L2P0C7V8 631 aa27.11■■□□□ 1.93
PKM-220ENST00000568459 NACADO15069 1562 aa27.08■■□□□ 1.93
PKM-220ENST00000568459 MYO15BQ96JP2 1530 aa26.81■■□□□ 1.88
PKM-220ENST00000568459 ZCCHC6Q5VYS8 1495 aaKnown RBP26.72■■□□□ 1.87
PKM-220ENST00000568459 DCAF1Q9Y4B6 1507 aa26.6■■□□□ 1.85
PKM-220ENST00000568459 UNC13AQ9UPW8 1703 aa26.58■■□□□ 1.85
PKM-220ENST00000568459 PABPN1Q86U42 306 aaKnown RBP eCLIP26.49■■□□□ 1.83
PKM-220ENST00000568459 BICRAQ9NZM4 1560 aa26.33■■□□□ 1.81
PKM-220ENST00000568459 DNAJC5BQ9UF47 199 aa26.28■■□□□ 1.8
PKM-220ENST00000568459 SCRIBQ14160 1630 aa26.2■■□□□ 1.78
PKM-220ENST00000568459 SHROOM4Q9ULL8 1493 aa26.03■■□□□ 1.76
PKM-220ENST00000568459 EIF4G1Q04637 1599 aaKnown RBP25.67■■□□□ 1.7
PKM-220ENST00000568459 CC2D2AQ9P2K1 1620 aa25.65■■□□□ 1.7
PKM-220ENST00000568459 CECR2Q9BXF3 1484 aa25.52■■□□□ 1.68
PKM-220ENST00000568459 SMARCA4P51532 1647 aa25.02■■□□□ 1.6
PKM-220ENST00000568459 NCAPD3P42695 1498 aa24.98■■□□□ 1.59
PKM-220ENST00000568459 BAZ1AQ9NRL2 1556 aaPredicted RBP24.98■■□□□ 1.59
PKM-220ENST00000568459 ATAD2BQ9ULI0 1458 aa24.95■■□□□ 1.59
PKM-220ENST00000568459 SMARCA2P51531 1590 aa24.93■■□□□ 1.58
PKM-220ENST00000568459 HMGXB3Q12766 1538 aa24.82■■□□□ 1.56
PKM-220ENST00000568459 MROH2BQ7Z745 1585 aa24.79■■□□□ 1.56
PKM-220ENST00000568459 PEG3Q9GZU2 1588 aa24.77■■□□□ 1.56
PKM-220ENST00000568459 BAZ1BQ9UIG0 1483 aaKnown RBP24.75■■□□□ 1.55
PKM-220ENST00000568459 WIZO95785 1651 aa24.53■■□□□ 1.52
PKM-220ENST00000568459 ERCC6Q03468 1493 aa24.5■■□□□ 1.51
PKM-220ENST00000568459 NESP48681 1621 aa24.46■■□□□ 1.51
PKM-220ENST00000568459 RSF1Q96T23 1441 aaPredicted RBP24.42■■□□□ 1.5
PKM-220ENST00000568459 LAMC3Q9Y6N6 1575 aa24.38■■□□□ 1.49
PKM-220ENST00000568459 CUX2O14529 1486 aa24.3■■□□□ 1.48
PKM-220ENST00000568459 CADPSQ9ULU8 1353 aa24.26■■□□□ 1.47
PKM-220ENST00000568459 PDS5BQ9NTI5 1447 aa24.25■■□□□ 1.47
PKM-220ENST00000568459 SUPT5HO00267 1087 aaKnown RBP24.24■■□□□ 1.47
PKM-220ENST00000568459 TOP2AP11388 1531 aaKnown RBP24.23■■□□□ 1.47
PKM-220ENST00000568459 KIF21AQ7Z4S6 1674 aa24.19■■□□□ 1.46
PKM-220ENST00000568459 THOC2Q8NI27 1593 aaKnown RBP24.12■■□□□ 1.45
PKM-220ENST00000568459 CFTRP13569 1480 aa24.04■■□□□ 1.44
PKM-220ENST00000568459 MRC2Q9UBG0 1479 aa23.98■■□□□ 1.43
PKM-220ENST00000568459 FANCD2Q9BXW9 1451 aa23.97■■□□□ 1.43
PKM-220ENST00000568459 CEP164Q9UPV0 1460 aa23.97■■□□□ 1.43
PKM-220ENST00000568459 CCDC88BA6NC98 1476 aa23.97■■□□□ 1.43
PKM-220ENST00000568459 CHIC1Q5VXU3 224 aa23.96■■□□□ 1.43
PKM-220ENST00000568459 DNAJC5Q9H3Z4 198 aa23.9■■□□□ 1.42
PKM-220ENST00000568459 WDR62O43379 1518 aa23.89■■□□□ 1.41
PKM-220ENST00000568459 PRDM2Q13029 1718 aa23.88■■□□□ 1.41
PKM-220ENST00000568459 HRCP23327 699 aa23.8■■□□□ 1.4
PKM-220ENST00000568459 URB2Q14146 1524 aaKnown RBP23.73■■□□□ 1.39
PKM-220ENST00000568459 ABCC8Q09428 1581 aa23.58■■□□□ 1.37
PKM-220ENST00000568459 TOPBP1Q92547 1522 aa23.56■■□□□ 1.36
PKM-220ENST00000568459 DNMBPQ6XZF7 1577 aa23.5■■□□□ 1.35
PKM-220ENST00000568459 IFT140Q96RY7 1462 aa23.48■■□□□ 1.35
PKM-220ENST00000568459 ZNF608Q9ULD9 1512 aaPredicted RBP23.38■■□□□ 1.33
PKM-220ENST00000568459 PCGF6Q9BYE7 350 aa23.35■■□□□ 1.33
PKM-220ENST00000568459 POLA1P09884 1462 aaPredicted RBP23.33■■□□□ 1.33
PKM-220ENST00000568459 OSCARQ8IYS5 282 aa23.31■■□□□ 1.32
PKM-220ENST00000568459 TARBP1Q13395 1621 aaKnown RBP23.31■■□□□ 1.32
PKM-220ENST00000568459 EIF4G3O43432 1585 aaKnown RBP23.27■■□□□ 1.32
PKM-220ENST00000568459 SOGA1O94964 1423 aa23.27■■□□□ 1.32
PKM-220ENST00000568459 CUX1P39880 1505 aa23.27■■□□□ 1.32
PKM-220ENST00000568459 FGD5Q6ZNL6 1462 aa23.24■■□□□ 1.31
PKM-220ENST00000568459 RAD54L2Q9Y4B4 1467 aa23.24■■□□□ 1.31
PKM-220ENST00000568459 AQRO60306 1485 aaKnown RBP eCLIP23.24■■□□□ 1.319e-8■■■■■ 27.1
PKM-220ENST00000568459 TDRD9Q8NDG6 1382 aaKnown RBP23.17■■□□□ 1.3
PKM-220ENST00000568459 WDR97A6NE52 1622 aa23.12■■□□□ 1.29
PKM-220ENST00000568459 TRIM26Q12899 539 aaPredicted RBP23.11■■□□□ 1.29
PKM-220ENST00000568459 FBLN2P98095 1184 aa23.08■■□□□ 1.28
PKM-220ENST00000568459 CHD1O14646 1710 aa23.07■■□□□ 1.28
PKM-220ENST00000568459 WRNQ14191 1432 aaPredicted RBP eCLIP23.05■■□□□ 1.281e-7■■■■□ 20.9
PKM-220ENST00000568459 LOC105371045A0A1W2PR82 267 aa23.03■■□□□ 1.28
PKM-220ENST00000568459 TRIM41Q8WV44 630 aa23.03■■□□□ 1.28
PKM-220ENST00000568459 TOP2BQ02880 1626 aa23.02■■□□□ 1.28
PKM-220ENST00000568459 GRIN2BQ13224 1484 aa23.01■■□□□ 1.27
PKM-220ENST00000568459 BIVM-ERCC5R4GMW8 1640 aa23.01■■□□□ 1.27
PKM-220ENST00000568459 ABCA10Q8WWZ4 1543 aa23■■□□□ 1.27
PKM-220ENST00000568459 SNAPC4Q5SXM2 1469 aa23■■□□□ 1.27
PKM-220ENST00000568459 GAPVD1Q14C86 1478 aa22.98■■□□□ 1.27
PKM-220ENST00000568459 SYNJ1O43426 1573 aa22.98■■□□□ 1.27
PKM-220ENST00000568459 MAGI1Q96QZ7 1491 aaPredicted RBP22.97■■□□□ 1.27
PKM-220ENST00000568459 CHMP7Q8WUX9 453 aaPredicted RBP22.96■■□□□ 1.27
PKM-220ENST00000568459 PBRM1Q86U86 1689 aa22.95■■□□□ 1.26
PKM-220ENST00000568459 ABCA5Q8WWZ7 1642 aa22.92■■□□□ 1.26
PKM-220ENST00000568459 ZEB1P37275 1124 aaPredicted RBP22.92■■□□□ 1.26
PKM-220ENST00000568459 RIMBP3CA6NJZ7 1639 aa22.91■■□□□ 1.26
PKM-220ENST00000568459 RIMBP3BA6NNM3 1639 aa22.91■■□□□ 1.26
PKM-220ENST00000568459 RIMBP3Q9UFD9 1639 aa22.91■■□□□ 1.26
PKM-220ENST00000568459 PPARGC1BQ86YN6 1023 aaKnown RBP22.89■■□□□ 1.25
PKM-220ENST00000568459 SYNJ2O15056 1496 aa22.88■■□□□ 1.25
PKM-220ENST00000568459 ARHGEF11O15085 1522 aa22.87■■□□□ 1.25
PKM-220ENST00000568459 CLASP1Q7Z460 1538 aa22.76■■□□□ 1.23
PKM-220ENST00000568459 CYB5RLQ6IPT4 315 aa22.74■■□□□ 1.23
PKM-220ENST00000568459 ERICH3Q5RHP9 1530 aa22.73■■□□□ 1.23
PKM-220ENST00000568459 ADAMTS12P58397 1594 aa22.72■■□□□ 1.23
PKM-220ENST00000568459 FHAD1B1AJZ9 1412 aa22.7■■□□□ 1.22
PKM-220ENST00000568459 GRIN2AQ12879 1464 aa22.7■■□□□ 1.22
PKM-220ENST00000568459 ARAP1Q96P48 1450 aa22.65■■□□□ 1.22
PKM-220ENST00000568459 KIF27Q86VH2 1401 aa22.6■■□□□ 1.21
PKM-220ENST00000568459 NUP160Q12769 1436 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms