RNA–Protein interactions for RNA: ENST00000568158.1

CNOT1-213, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 496 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-213ENST00000568158 NISCHQ9Y2I1 1504 aa31.39■■■□□ 2.62
CNOT1-213ENST00000568158 CCDC180Q9P1Z9 1646 aa27.78■■■□□ 2.04
CNOT1-213ENST00000568158 ABCC9O60706 1549 aa27.32■■□□□ 1.96
CNOT1-213ENST00000568158 AEBP2Q6ZN18 517 aaPredicted RBP27.12■■□□□ 1.93
CNOT1-213ENST00000568158 DCAF8L2P0C7V8 631 aa26.43■■□□□ 1.82
CNOT1-213ENST00000568158 RB1CC1Q8TDY2 1594 aa26.19■■□□□ 1.78
CNOT1-213ENST00000568158 NACADO15069 1562 aa26.17■■□□□ 1.78
CNOT1-213ENST00000568158 ZCCHC6Q5VYS8 1495 aaKnown RBP26.11■■□□□ 1.77
CNOT1-213ENST00000568158 MYO15BQ96JP2 1530 aa25.98■■□□□ 1.75
CNOT1-213ENST00000568158 DCAF1Q9Y4B6 1507 aa25.9■■□□□ 1.74
CNOT1-213ENST00000568158 PABPN1Q86U42 306 aaKnown RBP eCLIP25.64■■□□□ 1.7
CNOT1-213ENST00000568158 UNC13AQ9UPW8 1703 aa25.63■■□□□ 1.69
CNOT1-213ENST00000568158 SCRIBQ14160 1630 aa25.46■■□□□ 1.67
CNOT1-213ENST00000568158 BICRAQ9NZM4 1560 aa25.44■■□□□ 1.66
CNOT1-213ENST00000568158 CHIC1Q5VXU3 224 aa25.23■■□□□ 1.63
CNOT1-213ENST00000568158 DNAJC5BQ9UF47 199 aa25.17■■□□□ 1.62
CNOT1-213ENST00000568158 SHROOM4Q9ULL8 1493 aa25.02■■□□□ 1.6
CNOT1-213ENST00000568158 EIF4G1Q04637 1599 aaKnown RBP24.75■■□□□ 1.55
CNOT1-213ENST00000568158 CC2D2AQ9P2K1 1620 aa24.66■■□□□ 1.54
CNOT1-213ENST00000568158 CECR2Q9BXF3 1484 aa24.53■■□□□ 1.52
CNOT1-213ENST00000568158 SMARCA4P51532 1647 aa24.32■■□□□ 1.48
CNOT1-213ENST00000568158 BAZ1AQ9NRL2 1556 aaPredicted RBP24.29■■□□□ 1.48
CNOT1-213ENST00000568158 MROH2BQ7Z745 1585 aa24.24■■□□□ 1.47
CNOT1-213ENST00000568158 ATAD2BQ9ULI0 1458 aa24.23■■□□□ 1.47
CNOT1-213ENST00000568158 NCAPD3P42695 1498 aa24.19■■□□□ 1.46
CNOT1-213ENST00000568158 SMARCA2P51531 1590 aa24.13■■□□□ 1.45
CNOT1-213ENST00000568158 PEG3Q9GZU2 1588 aa24.04■■□□□ 1.44
CNOT1-213ENST00000568158 BAZ1BQ9UIG0 1483 aaKnown RBP24■■□□□ 1.43
CNOT1-213ENST00000568158 HMGXB3Q12766 1538 aa24■■□□□ 1.43
CNOT1-213ENST00000568158 RSF1Q96T23 1441 aaPredicted RBP23.98■■□□□ 1.43
CNOT1-213ENST00000568158 WIZO95785 1651 aa23.98■■□□□ 1.43
CNOT1-213ENST00000568158 NESP48681 1621 aa23.66■■□□□ 1.38
CNOT1-213ENST00000568158 TOP2AP11388 1531 aaKnown RBP23.64■■□□□ 1.38
CNOT1-213ENST00000568158 SUPT5HO00267 1087 aaKnown RBP23.54■■□□□ 1.36
CNOT1-213ENST00000568158 CADPSQ9ULU8 1353 aa23.52■■□□□ 1.36
CNOT1-213ENST00000568158 LAMC3Q9Y6N6 1575 aa23.5■■□□□ 1.35
CNOT1-213ENST00000568158 ERCC6Q03468 1493 aa23.49■■□□□ 1.35
CNOT1-213ENST00000568158 CCDC88BA6NC98 1476 aa23.47■■□□□ 1.35
CNOT1-213ENST00000568158 PDS5BQ9NTI5 1447 aa23.39■■□□□ 1.33
CNOT1-213ENST00000568158 CFTRP13569 1480 aa23.35■■□□□ 1.33
CNOT1-213ENST00000568158 KIF21AQ7Z4S6 1674 aa23.32■■□□□ 1.32
CNOT1-213ENST00000568158 FANCD2Q9BXW9 1451 aa23.23■■□□□ 1.31
CNOT1-213ENST00000568158 SENP3Q9H4L4 574 aaPredicted RBP23.19■■□□□ 1.3
CNOT1-213ENST00000568158 THOC2Q8NI27 1593 aaKnown RBP23.18■■□□□ 1.3
CNOT1-213ENST00000568158 CUX2O14529 1486 aa23.17■■□□□ 1.3
CNOT1-213ENST00000568158 CEP164Q9UPV0 1460 aa23.17■■□□□ 1.3
CNOT1-213ENST00000568158 MRC2Q9UBG0 1479 aa23.12■■□□□ 1.29
CNOT1-213ENST00000568158 PRDM2Q13029 1718 aa23.1■■□□□ 1.29
CNOT1-213ENST00000568158 WDR62O43379 1518 aa23.02■■□□□ 1.28
CNOT1-213ENST00000568158 URB2Q14146 1524 aaKnown RBP23.01■■□□□ 1.27
CNOT1-213ENST00000568158 TOPBP1Q92547 1522 aa22.86■■□□□ 1.25
CNOT1-213ENST00000568158 ABCC8Q09428 1581 aa22.82■■□□□ 1.24
CNOT1-213ENST00000568158 DNMBPQ6XZF7 1577 aa22.8■■□□□ 1.24
CNOT1-213ENST00000568158 PHF23Q9BUL5 403 aaPredicted RBP22.79■■□□□ 1.24
CNOT1-213ENST00000568158 CUX1P39880 1505 aa22.72■■□□□ 1.23
CNOT1-213ENST00000568158 IFT140Q96RY7 1462 aa22.68■■□□□ 1.22
CNOT1-213ENST00000568158 POLA1P09884 1462 aaPredicted RBP22.66■■□□□ 1.22
CNOT1-213ENST00000568158 ZNF608Q9ULD9 1512 aaPredicted RBP22.64■■□□□ 1.21
CNOT1-213ENST00000568158 RAD54L2Q9Y4B4 1467 aa22.64■■□□□ 1.21
CNOT1-213ENST00000568158 SOGA1O94964 1423 aa22.64■■□□□ 1.21
CNOT1-213ENST00000568158 FGD5Q6ZNL6 1462 aa22.62■■□□□ 1.21
CNOT1-213ENST00000568158 TARBP1Q13395 1621 aaKnown RBP22.59■■□□□ 1.21
CNOT1-213ENST00000568158 WRNQ14191 1432 aaPredicted RBP eCLIP22.58■■□□□ 1.21
CNOT1-213ENST00000568158 DNAJC5Q9H3Z4 198 aa22.57■■□□□ 1.2
CNOT1-213ENST00000568158 AQRO60306 1485 aaKnown RBP eCLIP22.55■■□□□ 1.28e-7■■■■■ 28.7
CNOT1-213ENST00000568158 TDRD9Q8NDG6 1382 aaKnown RBP22.53■■□□□ 1.2
CNOT1-213ENST00000568158 SYNJ1O43426 1573 aa22.51■■□□□ 1.19
CNOT1-213ENST00000568158 TOP2BQ02880 1626 aa22.49■■□□□ 1.19
CNOT1-213ENST00000568158 BIVM-ERCC5R4GMW8 1640 aa22.47■■□□□ 1.19
CNOT1-213ENST00000568158 EIF4G3O43432 1585 aaKnown RBP22.46■■□□□ 1.19
CNOT1-213ENST00000568158 ABCA10Q8WWZ4 1543 aa22.38■■□□□ 1.17
CNOT1-213ENST00000568158 OSCARQ8IYS5 282 aa22.37■■□□□ 1.17
CNOT1-213ENST00000568158 WDR97A6NE52 1622 aa22.36■■□□□ 1.17
CNOT1-213ENST00000568158 FBLN2P98095 1184 aa22.33■■□□□ 1.17
CNOT1-213ENST00000568158 GAPVD1Q14C86 1478 aa22.33■■□□□ 1.16
CNOT1-213ENST00000568158 GRIN2BQ13224 1484 aa22.29■■□□□ 1.16
CNOT1-213ENST00000568158 SNAPC4Q5SXM2 1469 aa22.28■■□□□ 1.16
CNOT1-213ENST00000568158 ABCA5Q8WWZ7 1642 aa22.25■■□□□ 1.15
CNOT1-213ENST00000568158 CHMP7Q8WUX9 453 aaPredicted RBP22.24■■□□□ 1.15
CNOT1-213ENST00000568158 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
CNOT1-213ENST00000568158 CHD1O14646 1710 aa22.2■■□□□ 1.14
CNOT1-213ENST00000568158 MAGI1Q96QZ7 1491 aaPredicted RBP22.2■■□□□ 1.14
CNOT1-213ENST00000568158 TRIM41Q8WV44 630 aa22.18■■□□□ 1.14
CNOT1-213ENST00000568158 SYNJ2O15056 1496 aa22.14■■□□□ 1.13
CNOT1-213ENST00000568158 KIF27Q86VH2 1401 aa22.1■■□□□ 1.13
CNOT1-213ENST00000568158 ERICH3Q5RHP9 1530 aa22.09■■□□□ 1.13
CNOT1-213ENST00000568158 IGF1RP08069 1367 aa22.08■■□□□ 1.12
CNOT1-213ENST00000568158 FHAD1B1AJZ9 1412 aa22.06■■□□□ 1.12
CNOT1-213ENST00000568158 ADAMTS12P58397 1594 aa22.04■■□□□ 1.12
CNOT1-213ENST00000568158 RUSC2Q8N2Y8 1516 aa22.02■■□□□ 1.12
CNOT1-213ENST00000568158 GRIN2AQ12879 1464 aa22.01■■□□□ 1.11
CNOT1-213ENST00000568158 CLASP1Q7Z460 1538 aa21.95■■□□□ 1.1
CNOT1-213ENST00000568158 CARMIL1Q5VZK9 1371 aa21.94■■□□□ 1.1
CNOT1-213ENST00000568158 RIMBP3CA6NJZ7 1639 aa21.92■■□□□ 1.1
CNOT1-213ENST00000568158 RIMBP3BA6NNM3 1639 aa21.92■■□□□ 1.1
CNOT1-213ENST00000568158 RIMBP3Q9UFD9 1639 aa21.92■■□□□ 1.1
CNOT1-213ENST00000568158 ARHGEF11O15085 1522 aa21.9■■□□□ 1.1
CNOT1-213ENST00000568158 NUP160Q12769 1436 aa21.9■■□□□ 1.1
CNOT1-213ENST00000568158 CEP170Q5SW79 1584 aa21.9■■□□□ 1.1
CNOT1-213ENST00000568158 CUL7Q14999 1698 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms