RNA–Protein interactions for RNA: ENST00000567399.5

COMMD4-219, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 976 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-219ENST00000567399 NISCHQ9Y2I1 1504 aa36.17■■■■□ 3.38
COMMD4-219ENST00000567399 CCDC180Q9P1Z9 1646 aa32.04■■■□□ 2.72
COMMD4-219ENST00000567399 ABCC9O60706 1549 aa31.32■■■□□ 2.6
COMMD4-219ENST00000567399 DCAF8L2P0C7V8 631 aa30.45■■■□□ 2.47
COMMD4-219ENST00000567399 RB1CC1Q8TDY2 1594 aa30.15■■■□□ 2.42
COMMD4-219ENST00000567399 NACADO15069 1562 aa30.13■■■□□ 2.41
COMMD4-219ENST00000567399 ZCCHC6Q5VYS8 1495 aaKnown RBP30.12■■■□□ 2.41
COMMD4-219ENST00000567399 MYO15BQ96JP2 1530 aa29.92■■■□□ 2.38
COMMD4-219ENST00000567399 DCAF1Q9Y4B6 1507 aa29.87■■■□□ 2.37
COMMD4-219ENST00000567399 UNC13AQ9UPW8 1703 aa29.36■■■□□ 2.29
COMMD4-219ENST00000567399 PABPN1Q86U42 306 aaKnown RBP eCLIP29.35■■■□□ 2.29
COMMD4-219ENST00000567399 SCRIBQ14160 1630 aa29.34■■■□□ 2.29
COMMD4-219ENST00000567399 BICRAQ9NZM4 1560 aa29.13■■■□□ 2.25
COMMD4-219ENST00000567399 SHROOM4Q9ULL8 1493 aa28.85■■■□□ 2.21
COMMD4-219ENST00000567399 DNAJC5BQ9UF47 199 aa28.55■■■□□ 2.16
COMMD4-219ENST00000567399 EIF4G1Q04637 1599 aaKnown RBP28.41■■■□□ 2.14
COMMD4-219ENST00000567399 CC2D2AQ9P2K1 1620 aa28.28■■■□□ 2.12
COMMD4-219ENST00000567399 CECR2Q9BXF3 1484 aa28.17■■■□□ 2.1
COMMD4-219ENST00000567399 BAZ1AQ9NRL2 1556 aaPredicted RBP28.04■■■□□ 2.08
COMMD4-219ENST00000567399 SMARCA4P51532 1647 aa28.02■■■□□ 2.08
COMMD4-219ENST00000567399 MROH2BQ7Z745 1585 aa27.88■■■□□ 2.05
COMMD4-219ENST00000567399 ATAD2BQ9ULI0 1458 aa27.84■■■□□ 2.05
COMMD4-219ENST00000567399 SMARCA2P51531 1590 aa27.84■■■□□ 2.05
COMMD4-219ENST00000567399 NCAPD3P42695 1498 aa27.79■■■□□ 2.04
COMMD4-219ENST00000567399 BAZ1BQ9UIG0 1483 aaKnown RBP27.68■■■□□ 2.02
COMMD4-219ENST00000567399 PEG3Q9GZU2 1588 aa27.68■■■□□ 2.02
COMMD4-219ENST00000567399 HMGXB3Q12766 1538 aa27.64■■■□□ 2.02
COMMD4-219ENST00000567399 RSF1Q96T23 1441 aaPredicted RBP27.63■■■□□ 2.01
COMMD4-219ENST00000567399 WIZO95785 1651 aa27.6■■■□□ 2.01
COMMD4-219ENST00000567399 TOP2AP11388 1531 aaKnown RBP27.31■■□□□ 1.96
COMMD4-219ENST00000567399 SUPT5HO00267 1087 aaKnown RBP27.27■■□□□ 1.96
COMMD4-219ENST00000567399 NESP48681 1621 aa27.1■■□□□ 1.93
COMMD4-219ENST00000567399 CADPSQ9ULU8 1353 aa27.05■■□□□ 1.92
COMMD4-219ENST00000567399 LAMC3Q9Y6N6 1575 aa27.05■■□□□ 1.92
COMMD4-219ENST00000567399 ERCC6Q03468 1493 aa27.04■■□□□ 1.92
COMMD4-219ENST00000567399 CCDC88BA6NC98 1476 aa27.02■■□□□ 1.92
COMMD4-219ENST00000567399 PDS5BQ9NTI5 1447 aa26.93■■□□□ 1.9
COMMD4-219ENST00000567399 CFTRP13569 1480 aa26.87■■□□□ 1.89
COMMD4-219ENST00000567399 KIF21AQ7Z4S6 1674 aa26.75■■□□□ 1.87
COMMD4-219ENST00000567399 FANCD2Q9BXW9 1451 aa26.73■■□□□ 1.87
COMMD4-219ENST00000567399 CEP164Q9UPV0 1460 aa26.7■■□□□ 1.87
COMMD4-219ENST00000567399 PRDM2Q13029 1718 aa26.62■■□□□ 1.85
COMMD4-219ENST00000567399 MRC2Q9UBG0 1479 aa26.6■■□□□ 1.85
COMMD4-219ENST00000567399 CUX2O14529 1486 aa26.59■■□□□ 1.85
COMMD4-219ENST00000567399 THOC2Q8NI27 1593 aaKnown RBP26.58■■□□□ 1.85
COMMD4-219ENST00000567399 WDR62O43379 1518 aa26.45■■□□□ 1.83
COMMD4-219ENST00000567399 URB2Q14146 1524 aaKnown RBP26.4■■□□□ 1.82
COMMD4-219ENST00000567399 ABCC8Q09428 1581 aa26.34■■□□□ 1.81
COMMD4-219ENST00000567399 TOPBP1Q92547 1522 aa26.29■■□□□ 1.8
COMMD4-219ENST00000567399 DNMBPQ6XZF7 1577 aa26.28■■□□□ 1.8
COMMD4-219ENST00000567399 CUX1P39880 1505 aa26.14■■□□□ 1.78
COMMD4-219ENST00000567399 IFT140Q96RY7 1462 aa26.11■■□□□ 1.77
COMMD4-219ENST00000567399 WRNQ14191 1432 aaPredicted RBP eCLIP26.1■■□□□ 1.77
COMMD4-219ENST00000567399 POLA1P09884 1462 aaPredicted RBP26.08■■□□□ 1.77
COMMD4-219ENST00000567399 FGD5Q6ZNL6 1462 aa26.07■■□□□ 1.76
COMMD4-219ENST00000567399 SOGA1O94964 1423 aa26.05■■□□□ 1.76
COMMD4-219ENST00000567399 RAD54L2Q9Y4B4 1467 aa26■■□□□ 1.75
COMMD4-219ENST00000567399 ZNF608Q9ULD9 1512 aaPredicted RBP25.96■■□□□ 1.75
COMMD4-219ENST00000567399 TOP2BQ02880 1626 aa25.96■■□□□ 1.75
COMMD4-219ENST00000567399 SYNJ1O43426 1573 aa25.95■■□□□ 1.75
COMMD4-219ENST00000567399 TARBP1Q13395 1621 aaKnown RBP25.94■■□□□ 1.74
COMMD4-219ENST00000567399 BIVM-ERCC5R4GMW8 1640 aa25.93■■□□□ 1.74
COMMD4-219ENST00000567399 TDRD9Q8NDG6 1382 aaKnown RBP25.89■■□□□ 1.74
COMMD4-219ENST00000567399 AQRO60306 1485 aaKnown RBP eCLIP25.88■■□□□ 1.73
COMMD4-219ENST00000567399 EIF4G3O43432 1585 aaKnown RBP25.85■■□□□ 1.73
COMMD4-219ENST00000567399 ABCA10Q8WWZ4 1543 aa25.78■■□□□ 1.72
COMMD4-219ENST00000567399 WDR97A6NE52 1622 aa25.76■■□□□ 1.71
COMMD4-219ENST00000567399 TRIM41Q8WV44 630 aa25.74■■□□□ 1.71
COMMD4-219ENST00000567399 GAPVD1Q14C86 1478 aa25.73■■□□□ 1.71
COMMD4-219ENST00000567399 FBLN2P98095 1184 aa25.7■■□□□ 1.7
COMMD4-219ENST00000567399 GRIN2BQ13224 1484 aa25.7■■□□□ 1.7
COMMD4-219ENST00000567399 OSCARQ8IYS5 282 aa25.64■■□□□ 1.7
COMMD4-219ENST00000567399 ABCA5Q8WWZ7 1642 aa25.63■■□□□ 1.69
COMMD4-219ENST00000567399 DNAJC5Q9H3Z4 198 aa25.63■■□□□ 1.69
COMMD4-219ENST00000567399 SNAPC4Q5SXM2 1469 aa25.63■■□□□ 1.69
COMMD4-219ENST00000567399 CHMP7Q8WUX9 453 aaPredicted RBP25.61■■□□□ 1.69
COMMD4-219ENST00000567399 PBRM1Q86U86 1689 aa25.61■■□□□ 1.69
COMMD4-219ENST00000567399 MAGI1Q96QZ7 1491 aaPredicted RBP25.58■■□□□ 1.69
COMMD4-219ENST00000567399 KIF27Q86VH2 1401 aa25.57■■□□□ 1.68
COMMD4-219ENST00000567399 CHD1O14646 1710 aa25.49■■□□□ 1.67
COMMD4-219ENST00000567399 ERICH3Q5RHP9 1530 aa25.49■■□□□ 1.67
COMMD4-219ENST00000567399 SYNJ2O15056 1496 aa25.49■■□□□ 1.67
COMMD4-219ENST00000567399 CHIC1Q5VXU3 224 aa25.44■■□□□ 1.66
COMMD4-219ENST00000567399 FHAD1B1AJZ9 1412 aa25.43■■□□□ 1.66
COMMD4-219ENST00000567399 IGF1RP08069 1367 aa25.4■■□□□ 1.66
COMMD4-219ENST00000567399 ADAMTS12P58397 1594 aa25.39■■□□□ 1.66
COMMD4-219ENST00000567399 GRIN2AQ12879 1464 aa25.34■■□□□ 1.65
COMMD4-219ENST00000567399 RUSC2Q8N2Y8 1516 aa25.33■■□□□ 1.65
COMMD4-219ENST00000567399 CARMIL1Q5VZK9 1371 aa25.31■■□□□ 1.64
COMMD4-219ENST00000567399 CUL7Q14999 1698 aa25.3■■□□□ 1.64
COMMD4-219ENST00000567399 FAM9AQ8IZU1 332 aaPredicted RBP25.23■■□□□ 1.63
COMMD4-219ENST00000567399 CLASP1Q7Z460 1538 aa25.18■■□□□ 1.62
COMMD4-219ENST00000567399 CSRNP3Q8WYN3 585 aa25.18■■□□□ 1.62
COMMD4-219ENST00000567399 NUP160Q12769 1436 aa25.18■■□□□ 1.62
COMMD4-219ENST00000567399 CEP170Q5SW79 1584 aa25.18■■□□□ 1.62
COMMD4-219ENST00000567399 EEA1Q15075 1411 aa25.17■■□□□ 1.62
COMMD4-219ENST00000567399 RAPGEF2Q9Y4G8 1499 aa25.15■■□□□ 1.62
COMMD4-219ENST00000567399 ARHGEF11O15085 1522 aa25.1■■□□□ 1.61
COMMD4-219ENST00000567399 RIMBP3CA6NJZ7 1639 aa25.08■■□□□ 1.61
COMMD4-219ENST00000567399 RIMBP3BA6NNM3 1639 aa25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms