RNA–Protein interactions for RNA: ENST00000566818.1

IFT140-208, Transcript of intraflagellar transport 140, humanhuman

TSL 3

Gene IFT140, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140-208ENST00000566818 NISCHQ9Y2I1 1504 aa46.33■■■■■ 5.01
IFT140-208ENST00000566818 CCDC180Q9P1Z9 1646 aa41.47■■■■■ 4.23
IFT140-208ENST00000566818 ABCC9O60706 1549 aa40.93■■■■■ 4.14
IFT140-208ENST00000566818 RB1CC1Q8TDY2 1594 aa39.25■■■■□ 3.87
IFT140-208ENST00000566818 NACADO15069 1562 aa39.08■■■■□ 3.85
IFT140-208ENST00000566818 DCAF8L2P0C7V8 631 aa38.83■■■■□ 3.81
IFT140-208ENST00000566818 MYO15BQ96JP2 1530 aa38.69■■■■□ 3.78
IFT140-208ENST00000566818 ZCCHC6Q5VYS8 1495 aaKnown RBP38.52■■■■□ 3.76
IFT140-208ENST00000566818 DCAF1Q9Y4B6 1507 aa38.35■■■■□ 3.73
IFT140-208ENST00000566818 UNC13AQ9UPW8 1703 aa38.29■■■■□ 3.72
IFT140-208ENST00000566818 PABPN1Q86U42 306 aaKnown RBP eCLIP38.11■■■■□ 3.69
IFT140-208ENST00000566818 BICRAQ9NZM4 1560 aa37.99■■■■□ 3.67
IFT140-208ENST00000566818 DNAJC5BQ9UF47 199 aa37.85■■■■□ 3.65
IFT140-208ENST00000566818 SCRIBQ14160 1630 aa37.76■■■■□ 3.64
IFT140-208ENST00000566818 SHROOM4Q9ULL8 1493 aa37.69■■■■□ 3.62
IFT140-208ENST00000566818 EIF4G1Q04637 1599 aaKnown RBP37.08■■■■□ 3.53
IFT140-208ENST00000566818 CC2D2AQ9P2K1 1620 aa37.02■■■■□ 3.52
IFT140-208ENST00000566818 CECR2Q9BXF3 1484 aa36.86■■■■□ 3.49
IFT140-208ENST00000566818 SMARCA4P51532 1647 aa36.08■■■■□ 3.37
IFT140-208ENST00000566818 NCAPD3P42695 1498 aa36.01■■■■□ 3.36
IFT140-208ENST00000566818 BAZ1AQ9NRL2 1556 aaPredicted RBP35.99■■■■□ 3.35
IFT140-208ENST00000566818 ATAD2BQ9ULI0 1458 aa35.96■■■■□ 3.35
IFT140-208ENST00000566818 SMARCA2P51531 1590 aa35.96■■■■□ 3.35
IFT140-208ENST00000566818 HMGXB3Q12766 1538 aa35.86■■■■□ 3.33
IFT140-208ENST00000566818 PEG3Q9GZU2 1588 aa35.73■■■■□ 3.31
IFT140-208ENST00000566818 BAZ1BQ9UIG0 1483 aaKnown RBP35.69■■■■□ 3.3
IFT140-208ENST00000566818 MROH2BQ7Z745 1585 aa35.67■■■■□ 3.3
IFT140-208ENST00000566818 ERCC6Q03468 1493 aa35.39■■■■□ 3.26
IFT140-208ENST00000566818 WIZO95785 1651 aa35.27■■■■□ 3.24
IFT140-208ENST00000566818 NESP48681 1621 aa35.26■■■■□ 3.24
IFT140-208ENST00000566818 LAMC3Q9Y6N6 1575 aa35.19■■■■□ 3.22
IFT140-208ENST00000566818 CUX2O14529 1486 aa35.18■■■■□ 3.22
IFT140-208ENST00000566818 RSF1Q96T23 1441 aaPredicted RBP35.09■■■■□ 3.21
IFT140-208ENST00000566818 PDS5BQ9NTI5 1447 aa34.96■■■■□ 3.19
IFT140-208ENST00000566818 CADPSQ9ULU8 1353 aa34.94■■■■□ 3.18
IFT140-208ENST00000566818 TOP2AP11388 1531 aaKnown RBP34.93■■■■□ 3.18
IFT140-208ENST00000566818 THOC2Q8NI27 1593 aaKnown RBP34.9■■■■□ 3.18
IFT140-208ENST00000566818 KIF21AQ7Z4S6 1674 aa34.89■■■■□ 3.18
IFT140-208ENST00000566818 CFTRP13569 1480 aa34.65■■■■□ 3.14
IFT140-208ENST00000566818 MRC2Q9UBG0 1479 aa34.64■■■■□ 3.14
IFT140-208ENST00000566818 CEP164Q9UPV0 1460 aa34.59■■■■□ 3.13
IFT140-208ENST00000566818 FANCD2Q9BXW9 1451 aa34.56■■■■□ 3.12
IFT140-208ENST00000566818 DNAJC5Q9H3Z4 198 aa34.53■■■■□ 3.12
IFT140-208ENST00000566818 WDR62O43379 1518 aa34.53■■■■□ 3.12
IFT140-208ENST00000566818 CCDC88BA6NC98 1476 aa34.46■■■■□ 3.11
IFT140-208ENST00000566818 PRDM2Q13029 1718 aa34.41■■■■□ 3.1
IFT140-208ENST00000566818 URB2Q14146 1524 aaKnown RBP34.22■■■■□ 3.07
IFT140-208ENST00000566818 ABCC8Q09428 1581 aa33.97■■■■□ 3.03
IFT140-208ENST00000566818 TOPBP1Q92547 1522 aa33.95■■■■□ 3.03
IFT140-208ENST00000566818 DNMBPQ6XZF7 1577 aa33.91■■■■□ 3.02
IFT140-208ENST00000566818 IFT140Q96RY7 1462 aa33.88■■■■□ 3.01
IFT140-208ENST00000566818 SUPT5HO00267 1087 aaKnown RBP33.83■■■■□ 3.01
IFT140-208ENST00000566818 ZNF608Q9ULD9 1512 aaPredicted RBP33.7■■■□□ 2.99
IFT140-208ENST00000566818 POLA1P09884 1462 aaPredicted RBP33.63■■■□□ 2.97
IFT140-208ENST00000566818 EIF4G3O43432 1585 aaKnown RBP33.63■■■□□ 2.97
IFT140-208ENST00000566818 TARBP1Q13395 1621 aaKnown RBP33.61■■■□□ 2.97
IFT140-208ENST00000566818 OSCARQ8IYS5 282 aa33.56■■■□□ 2.96
IFT140-208ENST00000566818 CUX1P39880 1505 aa33.51■■■□□ 2.95
IFT140-208ENST00000566818 FGD5Q6ZNL6 1462 aa33.49■■■□□ 2.95
IFT140-208ENST00000566818 SOGA1O94964 1423 aa33.46■■■□□ 2.95
IFT140-208ENST00000566818 RAD54L2Q9Y4B4 1467 aa33.45■■■□□ 2.95
IFT140-208ENST00000566818 AQRO60306 1485 aaKnown RBP eCLIP33.44■■■□□ 2.94
IFT140-208ENST00000566818 WDR97A6NE52 1622 aa33.42■■■□□ 2.94
IFT140-208ENST00000566818 TDRD9Q8NDG6 1382 aaKnown RBP33.31■■■□□ 2.92
IFT140-208ENST00000566818 CHD1O14646 1710 aa33.28■■■□□ 2.92
IFT140-208ENST00000566818 TRIM41Q8WV44 630 aa33.22■■■□□ 2.91
IFT140-208ENST00000566818 SNAPC4Q5SXM2 1469 aa33.19■■■□□ 2.9
IFT140-208ENST00000566818 GRIN2BQ13224 1484 aa33.18■■■□□ 2.9
IFT140-208ENST00000566818 FBLN2P98095 1184 aa33.16■■■□□ 2.9
IFT140-208ENST00000566818 MAGI1Q96QZ7 1491 aaPredicted RBP33.16■■■□□ 2.9
IFT140-208ENST00000566818 ABCA10Q8WWZ4 1543 aa33.15■■■□□ 2.9
IFT140-208ENST00000566818 BIVM-ERCC5R4GMW8 1640 aa33.14■■■□□ 2.9
IFT140-208ENST00000566818 WRNQ14191 1432 aaPredicted RBP eCLIP33.14■■■□□ 2.9
IFT140-208ENST00000566818 TOP2BQ02880 1626 aa33.13■■■□□ 2.89
IFT140-208ENST00000566818 RIMBP3CA6NJZ7 1639 aa33.12■■■□□ 2.89
IFT140-208ENST00000566818 RIMBP3BA6NNM3 1639 aa33.12■■■□□ 2.89
IFT140-208ENST00000566818 RIMBP3Q9UFD9 1639 aa33.12■■■□□ 2.89
IFT140-208ENST00000566818 GAPVD1Q14C86 1478 aa33.1■■■□□ 2.89
IFT140-208ENST00000566818 PBRM1Q86U86 1689 aa33.1■■■□□ 2.89
IFT140-208ENST00000566818 SYNJ1O43426 1573 aa33.08■■■□□ 2.89
IFT140-208ENST00000566818 ABCA5Q8WWZ7 1642 aa33.07■■■□□ 2.88
IFT140-208ENST00000566818 ARHGEF11O15085 1522 aa33.07■■■□□ 2.88
IFT140-208ENST00000566818 SYNJ2O15056 1496 aa33.01■■■□□ 2.88
IFT140-208ENST00000566818 CHMP7Q8WUX9 453 aaPredicted RBP33.01■■■□□ 2.87
IFT140-208ENST00000566818 CLASP1Q7Z460 1538 aa32.9■■■□□ 2.86
IFT140-208ENST00000566818 ADAMTS12P58397 1594 aa32.81■■■□□ 2.84
IFT140-208ENST00000566818 ERICH3Q5RHP9 1530 aa32.77■■■□□ 2.84
IFT140-208ENST00000566818 ARAP1Q96P48 1450 aa32.75■■■□□ 2.83
IFT140-208ENST00000566818 GRIN2AQ12879 1464 aa32.74■■■□□ 2.83
IFT140-208ENST00000566818 FHAD1B1AJZ9 1412 aa32.71■■■□□ 2.83
IFT140-208ENST00000566818 CYB5RLQ6IPT4 315 aa32.71■■■□□ 2.83
IFT140-208ENST00000566818 NUP160Q12769 1436 aa32.6■■■□□ 2.81
IFT140-208ENST00000566818 CEP170Q5SW79 1584 aa32.58■■■□□ 2.81
IFT140-208ENST00000566818 KIF27Q86VH2 1401 aa32.51■■■□□ 2.79
IFT140-208ENST00000566818 SHROOM2Q13796 1616 aa32.42■■■□□ 2.78
IFT140-208ENST00000566818 CUL7Q14999 1698 aa32.42■■■□□ 2.78
IFT140-208ENST00000566818 IGF1RP08069 1367 aa32.35■■■□□ 2.77
IFT140-208ENST00000566818 ERCC6L2Q5T890 1561 aa32.35■■■□□ 2.77
IFT140-208ENST00000566818 RUSC2Q8N2Y8 1516 aa32.34■■■□□ 2.77
IFT140-208ENST00000566818 TRHP20396 242 aaPredicted RBP32.25■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms