RNA–Protein interactions for RNA: ENST00000566811.5

RNF40-210, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-210ENST00000566811 NISCHQ9Y2I1 1504 aa48.7■■■■■ 5.39
RNF40-210ENST00000566811 CCDC180Q9P1Z9 1646 aa43.34■■■■■ 4.53
RNF40-210ENST00000566811 ABCC9O60706 1549 aa42.25■■■■■ 4.35
RNF40-210ENST00000566811 ZCCHC6Q5VYS8 1495 aaKnown RBP40.7■■■■■ 4.11
RNF40-210ENST00000566811 NACADO15069 1562 aa40.56■■■■■ 4.08
RNF40-210ENST00000566811 MYO15BQ96JP2 1530 aa40.52■■■■■ 4.08
RNF40-210ENST00000566811 RB1CC1Q8TDY2 1594 aa40.49■■■■■ 4.07
RNF40-210ENST00000566811 DCAF1Q9Y4B6 1507 aa40.47■■■■■ 4.07
RNF40-210ENST00000566811 DCAF8L2P0C7V8 631 aa40.19■■■■■ 4.02
RNF40-210ENST00000566811 DNAJC5BQ9UF47 199 aa40.06■■■■■ 4
RNF40-210ENST00000566811 UNC13AQ9UPW8 1703 aa39.57■■■■□ 3.93
RNF40-210ENST00000566811 SCRIBQ14160 1630 aa39.34■■■■□ 3.89
RNF40-210ENST00000566811 PABPN1Q86U42 306 aaKnown RBP eCLIP39.32■■■■□ 3.89
RNF40-210ENST00000566811 BICRAQ9NZM4 1560 aa39.13■■■■□ 3.85
RNF40-210ENST00000566811 SHROOM4Q9ULL8 1493 aa39.05■■■■□ 3.84
RNF40-210ENST00000566811 CC2D2AQ9P2K1 1620 aa38.12■■■■□ 3.69
RNF40-210ENST00000566811 EIF4G1Q04637 1599 aaKnown RBP38.11■■■■□ 3.69
RNF40-210ENST00000566811 CECR2Q9BXF3 1484 aa38.08■■■■□ 3.69
RNF40-210ENST00000566811 BAZ1AQ9NRL2 1556 aaPredicted RBP37.8■■■■□ 3.64
RNF40-210ENST00000566811 SMARCA4P51532 1647 aa37.76■■■■□ 3.63
RNF40-210ENST00000566811 SMARCA2P51531 1590 aa37.47■■■■□ 3.59
RNF40-210ENST00000566811 PEG3Q9GZU2 1588 aa37.46■■■■□ 3.59
RNF40-210ENST00000566811 MROH2BQ7Z745 1585 aa37.45■■■■□ 3.59
RNF40-210ENST00000566811 ATAD2BQ9ULI0 1458 aa37.36■■■■□ 3.57
RNF40-210ENST00000566811 NCAPD3P42695 1498 aa37.32■■■■□ 3.56
RNF40-210ENST00000566811 HMGXB3Q12766 1538 aa37.29■■■■□ 3.56
RNF40-210ENST00000566811 RSF1Q96T23 1441 aaPredicted RBP37.17■■■■□ 3.54
RNF40-210ENST00000566811 BAZ1BQ9UIG0 1483 aaKnown RBP37.12■■■■□ 3.53
RNF40-210ENST00000566811 WIZO95785 1651 aa37.12■■■■□ 3.53
RNF40-210ENST00000566811 DNAJC5Q9H3Z4 198 aa36.99■■■■□ 3.51
RNF40-210ENST00000566811 TOP2AP11388 1531 aaKnown RBP36.85■■■■□ 3.49
RNF40-210ENST00000566811 CUX2O14529 1486 aa36.5■■■■□ 3.43
RNF40-210ENST00000566811 ERCC6Q03468 1493 aa36.45■■■■□ 3.43
RNF40-210ENST00000566811 LAMC3Q9Y6N6 1575 aa36.37■■■■□ 3.41
RNF40-210ENST00000566811 SUPT5HO00267 1087 aaKnown RBP36.34■■■■□ 3.41
RNF40-210ENST00000566811 CCDC88BA6NC98 1476 aa36.26■■■■□ 3.4
RNF40-210ENST00000566811 NESP48681 1621 aa36.2■■■■□ 3.39
RNF40-210ENST00000566811 CADPSQ9ULU8 1353 aa36.2■■■■□ 3.39
RNF40-210ENST00000566811 PRDM2Q13029 1718 aa36.14■■■■□ 3.38
RNF40-210ENST00000566811 CFTRP13569 1480 aa36.12■■■■□ 3.37
RNF40-210ENST00000566811 PDS5BQ9NTI5 1447 aa36.03■■■■□ 3.36
RNF40-210ENST00000566811 KIF21AQ7Z4S6 1674 aa35.91■■■■□ 3.34
RNF40-210ENST00000566811 THOC2Q8NI27 1593 aaKnown RBP35.85■■■■□ 3.33
RNF40-210ENST00000566811 FANCD2Q9BXW9 1451 aa35.8■■■■□ 3.32
RNF40-210ENST00000566811 CEP164Q9UPV0 1460 aa35.78■■■■□ 3.32
RNF40-210ENST00000566811 MRC2Q9UBG0 1479 aa35.63■■■■□ 3.29
RNF40-210ENST00000566811 WDR62O43379 1518 aa35.55■■■■□ 3.28
RNF40-210ENST00000566811 ABCC8Q09428 1581 aa35.44■■■■□ 3.26
RNF40-210ENST00000566811 URB2Q14146 1524 aaKnown RBP35.38■■■■□ 3.25
RNF40-210ENST00000566811 DNMBPQ6XZF7 1577 aa35.37■■■■□ 3.25
RNF40-210ENST00000566811 TOPBP1Q92547 1522 aa35.29■■■■□ 3.24
RNF40-210ENST00000566811 TRIM41Q8WV44 630 aa35.21■■■■□ 3.23
RNF40-210ENST00000566811 CUX1P39880 1505 aa35.14■■■■□ 3.22
RNF40-210ENST00000566811 BIVM-ERCC5R4GMW8 1640 aa35.1■■■■□ 3.21
RNF40-210ENST00000566811 WRNQ14191 1432 aaPredicted RBP eCLIP35.09■■■■□ 3.21
RNF40-210ENST00000566811 TOP2BQ02880 1626 aa35.06■■■■□ 3.2
RNF40-210ENST00000566811 IFT140Q96RY7 1462 aa35.02■■■■□ 3.2
RNF40-210ENST00000566811 POLA1P09884 1462 aaPredicted RBP35.01■■■■□ 3.19
RNF40-210ENST00000566811 SYNJ1O43426 1573 aa34.98■■■■□ 3.19
RNF40-210ENST00000566811 FGD5Q6ZNL6 1462 aa34.97■■■■□ 3.19
RNF40-210ENST00000566811 TARBP1Q13395 1621 aaKnown RBP34.92■■■■□ 3.18
RNF40-210ENST00000566811 WDR97A6NE52 1622 aa34.88■■■■□ 3.17
RNF40-210ENST00000566811 OSCARQ8IYS5 282 aa34.83■■■■□ 3.17
RNF40-210ENST00000566811 SOGA1O94964 1423 aa34.81■■■■□ 3.16
RNF40-210ENST00000566811 RAD54L2Q9Y4B4 1467 aa34.73■■■■□ 3.15
RNF40-210ENST00000566811 EIF4G3O43432 1585 aaKnown RBP34.73■■■■□ 3.15
RNF40-210ENST00000566811 ABCA10Q8WWZ4 1543 aa34.72■■■■□ 3.15
RNF40-210ENST00000566811 ZNF608Q9ULD9 1512 aaPredicted RBP34.66■■■■□ 3.14
RNF40-210ENST00000566811 ABCA5Q8WWZ7 1642 aa34.59■■■■□ 3.13
RNF40-210ENST00000566811 PBRM1Q86U86 1689 aa34.52■■■■□ 3.12
RNF40-210ENST00000566811 AQRO60306 1485 aaKnown RBP eCLIP34.5■■■■□ 3.113e-8■■■■□ 19.7
RNF40-210ENST00000566811 TDRD9Q8NDG6 1382 aaKnown RBP34.49■■■■□ 3.11
RNF40-210ENST00000566811 GAPVD1Q14C86 1478 aa34.48■■■■□ 3.11
RNF40-210ENST00000566811 GRIN2BQ13224 1484 aa34.46■■■■□ 3.11
RNF40-210ENST00000566811 RIMBP3CA6NJZ7 1639 aa34.4■■■■□ 3.1
RNF40-210ENST00000566811 RIMBP3BA6NNM3 1639 aa34.4■■■■□ 3.1
RNF40-210ENST00000566811 RIMBP3Q9UFD9 1639 aa34.4■■■■□ 3.1
RNF40-210ENST00000566811 MAGI1Q96QZ7 1491 aaPredicted RBP34.38■■■■□ 3.09
RNF40-210ENST00000566811 ERICH3Q5RHP9 1530 aa34.37■■■■□ 3.09
RNF40-210ENST00000566811 KIF27Q86VH2 1401 aa34.36■■■■□ 3.09
RNF40-210ENST00000566811 SNAPC4Q5SXM2 1469 aa34.3■■■■□ 3.08
RNF40-210ENST00000566811 ARHGEF11O15085 1522 aa34.25■■■■□ 3.07
RNF40-210ENST00000566811 ADAMTS12P58397 1594 aa34.22■■■■□ 3.07
RNF40-210ENST00000566811 CHD1O14646 1710 aa34.21■■■■□ 3.07
RNF40-210ENST00000566811 CUL7Q14999 1698 aa34.21■■■■□ 3.07
RNF40-210ENST00000566811 SYNJ2O15056 1496 aa34.2■■■■□ 3.06
RNF40-210ENST00000566811 CHIC1Q5VXU3 224 aa34.19■■■■□ 3.06
RNF40-210ENST00000566811 FHAD1B1AJZ9 1412 aa34.13■■■■□ 3.05
RNF40-210ENST00000566811 EEA1Q15075 1411 aa34.07■■■■□ 3.04
RNF40-210ENST00000566811 CYB5RLQ6IPT4 315 aa34.07■■■■□ 3.04
RNF40-210ENST00000566811 IGF1RP08069 1367 aa34.04■■■■□ 3.04
RNF40-210ENST00000566811 GRIN2AQ12879 1464 aa34.01■■■■□ 3.03
RNF40-210ENST00000566811 CHMP7Q8WUX9 453 aaPredicted RBP34■■■■□ 3.03
RNF40-210ENST00000566811 FBLN2P98095 1184 aa33.98■■■■□ 3.03
RNF40-210ENST00000566811 RUSC2Q8N2Y8 1516 aa33.96■■■■□ 3.03
RNF40-210ENST00000566811 ARAP1Q96P48 1450 aa33.91■■■■□ 3.02
RNF40-210ENST00000566811 CARMIL1Q5VZK9 1371 aa33.88■■■■□ 3.01
RNF40-210ENST00000566811 NUP160Q12769 1436 aa33.84■■■■□ 3.01
RNF40-210ENST00000566811 CLASP1Q7Z460 1538 aa33.84■■■■□ 3.01
RNF40-210ENST00000566811 RAPGEF2Q9Y4G8 1499 aa33.81■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms