RNA–Protein interactions for RNA: ENST00000566640.1

SIN3A-207, Transcript of SIN3 transcription regulator family member A, humanhuman

TSL 2

Gene SIN3A, Length 944 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIN3A-207ENST00000566640 AEBP2Q6ZN18 517 aaPredicted RBP21.81■■□□□ 1.08
SIN3A-207ENST00000566640 CHIC1Q5VXU3 224 aa20.28■□□□□ 0.84
SIN3A-207ENST00000566640 SENP3Q9H4L4 574 aaPredicted RBP18.67■□□□□ 0.58
SIN3A-207ENST00000566640 PHF23Q9BUL5 403 aaPredicted RBP18.33■□□□□ 0.52
SIN3A-207ENST00000566640 POTEDQ86YR6 584 aa17.87■□□□□ 0.45
SIN3A-207ENST00000566640 FOXD1Q16676 465 aa17.56■□□□□ 0.4
SIN3A-207ENST00000566640 NISCHQ9Y2I1 1504 aa17.55■□□□□ 0.4
SIN3A-207ENST00000566640 MSH5O43196 834 aa16.72■□□□□ 0.27
SIN3A-207ENST00000566640 PLPPR3Q6T4P5 718 aa16.29■□□□□ 0.2
SIN3A-207ENST00000566640 PIAS4Q8N2W9 510 aaPredicted RBP16.15■□□□□ 0.18
SIN3A-207ENST00000566640 PPP6R1Q9UPN7 881 aa15.76■□□□□ 0.11
SIN3A-207ENST00000566640 ABCC9O60706 1549 aa15.76■□□□□ 0.11
SIN3A-207ENST00000566640 CCDC180Q9P1Z9 1646 aa15.7■□□□□ 0.1
SIN3A-207ENST00000566640 ADRA2BP18089 450 aa15.63■□□□□ 0.09
SIN3A-207ENST00000566640 RB1CC1Q8TDY2 1594 aa14.98□□□□□ -0.01
SIN3A-207ENST00000566640 NACADO15069 1562 aa14.9□□□□□ -0.02
SIN3A-207ENST00000566640 CACNB1Q02641 598 aaPredicted RBP14.89□□□□□ -0.03
SIN3A-207ENST00000566640 DNAJC5BQ9UF47 199 aa14.88□□□□□ -0.03
SIN3A-207ENST00000566640 DCAF8L2P0C7V8 631 aa14.74□□□□□ -0.05
SIN3A-207ENST00000566640 MYO15BQ96JP2 1530 aa14.74□□□□□ -0.05
SIN3A-207ENST00000566640 DMRT2Q9Y5R5 561 aa14.69□□□□□ -0.06
SIN3A-207ENST00000566640 PABPN1Q86U42 306 aaKnown RBP eCLIP14.68□□□□□ -0.06
SIN3A-207ENST00000566640 MAPK8IP2Q13387 824 aaPredicted RBP14.64□□□□□ -0.07
SIN3A-207ENST00000566640 BICRAQ9NZM4 1560 aa14.59□□□□□ -0.07
SIN3A-207ENST00000566640 ZCCHC6Q5VYS8 1495 aaKnown RBP14.57□□□□□ -0.08
SIN3A-207ENST00000566640 UNC13AQ9UPW8 1703 aa14.55□□□□□ -0.08
SIN3A-207ENST00000566640 DCAF1Q9Y4B6 1507 aa14.52□□□□□ -0.08
SIN3A-207ENST00000566640 SHROOM4Q9ULL8 1493 aa14.42□□□□□ -0.1
SIN3A-207ENST00000566640 PPP4R3CPQ6ZMV5 832 aa14.35□□□□□ -0.11
SIN3A-207ENST00000566640 SCRIBQ14160 1630 aa14.3□□□□□ -0.12
SIN3A-207ENST00000566640 SCAF1Q9H7N4 1312 aaKnown RBP14.23□□□□□ -0.13
SIN3A-207ENST00000566640 CC2D2AQ9P2K1 1620 aa14.23□□□□□ -0.13
SIN3A-207ENST00000566640 RNF39Q9H2S5 420 aa14.22□□□□□ -0.13
SIN3A-207ENST00000566640 CECR2Q9BXF3 1484 aa14.22□□□□□ -0.13
SIN3A-207ENST00000566640 EIF4G1Q04637 1599 aaKnown RBP14.22□□□□□ -0.13
SIN3A-207ENST00000566640 KCNA4P22459 653 aa14.2□□□□□ -0.14
SIN3A-207ENST00000566640 DCAF8L1A6NGE4 600 aa14.08□□□□□ -0.16
SIN3A-207ENST00000566640 NCBP3Q53F19 620 aaKnown RBP14.01□□□□□ -0.17
SIN3A-207ENST00000566640 C1QBPQ07021 282 aaKnown RBP13.93□□□□□ -0.18
SIN3A-207ENST00000566640 CNKSR2Q8WXI2 1034 aa13.93□□□□□ -0.18
SIN3A-207ENST00000566640 HOXD11P31277 338 aaPredicted RBP13.81□□□□□ -0.2
SIN3A-207ENST00000566640 POTEHQ6S545 545 aa13.81□□□□□ -0.2
SIN3A-207ENST00000566640 NPM3O75607 178 aaKnown RBP13.8□□□□□ -0.2
SIN3A-207ENST00000566640 NCAPD3P42695 1498 aa13.8□□□□□ -0.2
SIN3A-207ENST00000566640 ATAD2BQ9ULI0 1458 aa13.74□□□□□ -0.21
SIN3A-207ENST00000566640 SMARCA4P51532 1647 aa13.67□□□□□ -0.22
SIN3A-207ENST00000566640 HMGXB3Q12766 1538 aa13.66□□□□□ -0.22
SIN3A-207ENST00000566640 DNAJC5Q9H3Z4 198 aa13.66□□□□□ -0.22
SIN3A-207ENST00000566640 SMARCA2P51531 1590 aa13.66□□□□□ -0.22
SIN3A-207ENST00000566640 CUX2O14529 1486 aa13.63□□□□□ -0.23
SIN3A-207ENST00000566640 RNF216Q9NWF9 866 aaPredicted RBP13.63□□□□□ -0.23
SIN3A-207ENST00000566640 BAZ1AQ9NRL2 1556 aaPredicted RBP13.61□□□□□ -0.23
SIN3A-207ENST00000566640 ERCC6Q03468 1493 aa13.6□□□□□ -0.23
SIN3A-207ENST00000566640 PEG3Q9GZU2 1588 aa13.58□□□□□ -0.24
SIN3A-207ENST00000566640 BAZ1BQ9UIG0 1483 aaKnown RBP13.56□□□□□ -0.24
SIN3A-207ENST00000566640 NESP48681 1621 aa13.54□□□□□ -0.24
SIN3A-207ENST00000566640 MROH2BQ7Z745 1585 aa13.52□□□□□ -0.25
SIN3A-207ENST00000566640 SLC4A1APQ9BWU0 796 aaKnown RBP13.51□□□□□ -0.25
SIN3A-207ENST00000566640 LAMC3Q9Y6N6 1575 aa13.44□□□□□ -0.26
SIN3A-207ENST00000566640 THOC2Q8NI27 1593 aaKnown RBP13.41□□□□□ -0.26
SIN3A-207ENST00000566640 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
SIN3A-207ENST00000566640 CADPSQ9ULU8 1353 aa13.36□□□□□ -0.27
SIN3A-207ENST00000566640 EHMT2Q96KQ7 1210 aa13.35□□□□□ -0.27
SIN3A-207ENST00000566640 WIZO95785 1651 aa13.29□□□□□ -0.28
SIN3A-207ENST00000566640 KIF21AQ7Z4S6 1674 aa13.28□□□□□ -0.28
SIN3A-207ENST00000566640 MRC2Q9UBG0 1479 aa13.26□□□□□ -0.29
SIN3A-207ENST00000566640 RSF1Q96T23 1441 aaPredicted RBP13.25□□□□□ -0.29
SIN3A-207ENST00000566640 WDR62O43379 1518 aa13.24□□□□□ -0.29
SIN3A-207ENST00000566640 CFTRP13569 1480 aa13.21□□□□□ -0.3
SIN3A-207ENST00000566640 FANCD2Q9BXW9 1451 aa13.19□□□□□ -0.3
SIN3A-207ENST00000566640 CEP164Q9UPV0 1460 aa13.19□□□□□ -0.3
SIN3A-207ENST00000566640 CSRNP3Q8WYN3 585 aa13.18□□□□□ -0.3
SIN3A-207ENST00000566640 TOP2AP11388 1531 aaKnown RBP13.18□□□□□ -0.3
SIN3A-207ENST00000566640 ZBTB22O15209 634 aa13.11□□□□□ -0.31
SIN3A-207ENST00000566640 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.11□□□□□ -0.312e-10■□□□□ 10.5
SIN3A-207ENST00000566640 URB2Q14146 1524 aaKnown RBP13.09□□□□□ -0.31
SIN3A-207ENST00000566640 CCDC88BA6NC98 1476 aa13.04□□□□□ -0.32
SIN3A-207ENST00000566640 DSG3P32926 999 aa13.02□□□□□ -0.33
SIN3A-207ENST00000566640 SLC4A2P04920 1241 aa13.01□□□□□ -0.33
SIN3A-207ENST00000566640 FOXD4L1Q9NU39 408 aa13□□□□□ -0.33
SIN3A-207ENST00000566640 OSCARQ8IYS5 282 aa12.98□□□□□ -0.33
SIN3A-207ENST00000566640 TRIM41Q8WV44 630 aa12.98□□□□□ -0.33
SIN3A-207ENST00000566640 IFT140Q96RY7 1462 aa12.95□□□□□ -0.34
SIN3A-207ENST00000566640 TOPBP1Q92547 1522 aa12.93□□□□□ -0.34
SIN3A-207ENST00000566640 ZNF608Q9ULD9 1512 aaPredicted RBP12.93□□□□□ -0.34
SIN3A-207ENST00000566640 PRDM2Q13029 1718 aa12.91□□□□□ -0.34
SIN3A-207ENST00000566640 ABCC8Q09428 1581 aa12.89□□□□□ -0.35
SIN3A-207ENST00000566640 SPINK5Q9NQ38 1064 aaPredicted RBP12.87□□□□□ -0.35
SIN3A-207ENST00000566640 DNMBPQ6XZF7 1577 aa12.86□□□□□ -0.35
SIN3A-207ENST00000566640 CAPN15O75808 1086 aa12.84□□□□□ -0.35
SIN3A-207ENST00000566640 EIF4G3O43432 1585 aaKnown RBP12.82□□□□□ -0.36
SIN3A-207ENST00000566640 POLA1P09884 1462 aaPredicted RBP12.81□□□□□ -0.36
SIN3A-207ENST00000566640 TARBP1Q13395 1621 aaKnown RBP12.8□□□□□ -0.36
SIN3A-207ENST00000566640 AQRO60306 1485 aaKnown RBP eCLIP12.8□□□□□ -0.36
SIN3A-207ENST00000566640 U3KPZ7 1027 aaPredicted RBP12.79□□□□□ -0.36
SIN3A-207ENST00000566640 RIMBP3CA6NJZ7 1639 aa12.79□□□□□ -0.36
SIN3A-207ENST00000566640 RIMBP3BA6NNM3 1639 aa12.79□□□□□ -0.36
SIN3A-207ENST00000566640 RIMBP3Q9UFD9 1639 aa12.79□□□□□ -0.36
SIN3A-207ENST00000566640 ARHGEF11O15085 1522 aa12.78□□□□□ -0.36
SIN3A-207ENST00000566640 MYCNP04198 464 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms