RNA–Protein interactions for RNA: ENST00000566221.5

SPG7-213, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 3

Gene SPG7, Length 734 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-213ENST00000566221 NISCHQ9Y2I1 1504 aa35.08■■■■□ 3.21
SPG7-213ENST00000566221 CCDC180Q9P1Z9 1646 aa31.1■■■□□ 2.57
SPG7-213ENST00000566221 ABCC9O60706 1549 aa29.75■■■□□ 2.35
SPG7-213ENST00000566221 ZCCHC6Q5VYS8 1495 aaKnown RBP29.37■■■□□ 2.29
SPG7-213ENST00000566221 DCAF1Q9Y4B6 1507 aa29.1■■■□□ 2.25
SPG7-213ENST00000566221 MYO15BQ96JP2 1530 aa29.03■■■□□ 2.24
SPG7-213ENST00000566221 NACADO15069 1562 aa29.02■■■□□ 2.24
SPG7-213ENST00000566221 RB1CC1Q8TDY2 1594 aa28.95■■■□□ 2.22
SPG7-213ENST00000566221 DCAF8L2P0C7V8 631 aa28.93■■■□□ 2.22
SPG7-213ENST00000566221 DNAJC5BQ9UF47 199 aa28.57■■■□□ 2.16
SPG7-213ENST00000566221 UNC13AQ9UPW8 1703 aa28.4■■■□□ 2.14
SPG7-213ENST00000566221 SCRIBQ14160 1630 aa28.34■■■□□ 2.13
SPG7-213ENST00000566221 BICRAQ9NZM4 1560 aa28.02■■■□□ 2.08
SPG7-213ENST00000566221 SHROOM4Q9ULL8 1493 aa27.95■■■□□ 2.06
SPG7-213ENST00000566221 PABPN1Q86U42 306 aaKnown RBP eCLIP27.79■■■□□ 2.044e-8■■■□□ 16.7
SPG7-213ENST00000566221 EIF4G1Q04637 1599 aaKnown RBP27.24■■□□□ 1.95
SPG7-213ENST00000566221 CECR2Q9BXF3 1484 aa27.21■■□□□ 1.95
SPG7-213ENST00000566221 BAZ1AQ9NRL2 1556 aaPredicted RBP27.2■■□□□ 1.94
SPG7-213ENST00000566221 SMARCA4P51532 1647 aa27.17■■□□□ 1.94
SPG7-213ENST00000566221 MROH2BQ7Z745 1585 aa27.04■■□□□ 1.92
SPG7-213ENST00000566221 CC2D2AQ9P2K1 1620 aa27.01■■□□□ 1.91
SPG7-213ENST00000566221 PEG3Q9GZU2 1588 aa26.9■■□□□ 1.9
SPG7-213ENST00000566221 RSF1Q96T23 1441 aaPredicted RBP26.88■■□□□ 1.89
SPG7-213ENST00000566221 SMARCA2P51531 1590 aa26.88■■□□□ 1.89
SPG7-213ENST00000566221 DNAJC5Q9H3Z4 198 aa26.83■■□□□ 1.89
SPG7-213ENST00000566221 WIZO95785 1651 aa26.82■■□□□ 1.88
SPG7-213ENST00000566221 ATAD2BQ9ULI0 1458 aa26.81■■□□□ 1.88
SPG7-213ENST00000566221 HMGXB3Q12766 1538 aa26.72■■□□□ 1.87
SPG7-213ENST00000566221 NCAPD3P42695 1498 aa26.7■■□□□ 1.87
SPG7-213ENST00000566221 BAZ1BQ9UIG0 1483 aaKnown RBP26.65■■□□□ 1.86
SPG7-213ENST00000566221 TOP2AP11388 1531 aaKnown RBP26.58■■□□□ 1.85
SPG7-213ENST00000566221 SUPT5HO00267 1087 aaKnown RBP26.52■■□□□ 1.84
SPG7-213ENST00000566221 CCDC88BA6NC98 1476 aa26.18■■□□□ 1.78
SPG7-213ENST00000566221 PRDM2Q13029 1718 aa26.01■■□□□ 1.75
SPG7-213ENST00000566221 LAMC3Q9Y6N6 1575 aa26.01■■□□□ 1.75
SPG7-213ENST00000566221 CADPSQ9ULU8 1353 aa25.93■■□□□ 1.74
SPG7-213ENST00000566221 CFTRP13569 1480 aa25.92■■□□□ 1.74
SPG7-213ENST00000566221 NESP48681 1621 aa25.9■■□□□ 1.74
SPG7-213ENST00000566221 CUX2O14529 1486 aa25.82■■□□□ 1.72
SPG7-213ENST00000566221 KIF21AQ7Z4S6 1674 aa25.75■■□□□ 1.71
SPG7-213ENST00000566221 PDS5BQ9NTI5 1447 aa25.73■■□□□ 1.71
SPG7-213ENST00000566221 ERCC6Q03468 1493 aa25.71■■□□□ 1.71
SPG7-213ENST00000566221 FANCD2Q9BXW9 1451 aa25.68■■□□□ 1.7
SPG7-213ENST00000566221 CEP164Q9UPV0 1460 aa25.63■■□□□ 1.69
SPG7-213ENST00000566221 THOC2Q8NI27 1593 aaKnown RBP25.5■■□□□ 1.67
SPG7-213ENST00000566221 MRC2Q9UBG0 1479 aa25.47■■□□□ 1.67
SPG7-213ENST00000566221 TRIM41Q8WV44 630 aa25.45■■□□□ 1.66
SPG7-213ENST00000566221 ABCC8Q09428 1581 aa25.43■■□□□ 1.66
SPG7-213ENST00000566221 DNMBPQ6XZF7 1577 aa25.4■■□□□ 1.66
SPG7-213ENST00000566221 WDR62O43379 1518 aa25.4■■□□□ 1.66
SPG7-213ENST00000566221 URB2Q14146 1524 aaKnown RBP25.39■■□□□ 1.66
SPG7-213ENST00000566221 BIVM-ERCC5R4GMW8 1640 aa25.36■■□□□ 1.65
SPG7-213ENST00000566221 WRNQ14191 1432 aaPredicted RBP eCLIP25.36■■□□□ 1.65
SPG7-213ENST00000566221 CUX1P39880 1505 aa25.35■■□□□ 1.65
SPG7-213ENST00000566221 TOPBP1Q92547 1522 aa25.34■■□□□ 1.65
SPG7-213ENST00000566221 SYNJ1O43426 1573 aa25.32■■□□□ 1.64
SPG7-213ENST00000566221 TOP2BQ02880 1626 aa25.32■■□□□ 1.64
SPG7-213ENST00000566221 FGD5Q6ZNL6 1462 aa25.17■■□□□ 1.62
SPG7-213ENST00000566221 POLA1P09884 1462 aaPredicted RBP25.15■■□□□ 1.62
SPG7-213ENST00000566221 CHIC1Q5VXU3 224 aa25.07■■□□□ 1.6
SPG7-213ENST00000566221 WDR97A6NE52 1622 aa25.07■■□□□ 1.6
SPG7-213ENST00000566221 TARBP1Q13395 1621 aaKnown RBP25.07■■□□□ 1.6
SPG7-213ENST00000566221 IFT140Q96RY7 1462 aa25.05■■□□□ 1.6
SPG7-213ENST00000566221 SOGA1O94964 1423 aa25.01■■□□□ 1.59
SPG7-213ENST00000566221 RAD54L2Q9Y4B4 1467 aa24.99■■□□□ 1.59
SPG7-213ENST00000566221 ABCA10Q8WWZ4 1543 aa24.96■■□□□ 1.59
SPG7-213ENST00000566221 EIF4G3O43432 1585 aaKnown RBP24.89■■□□□ 1.58
SPG7-213ENST00000566221 ABCA5Q8WWZ7 1642 aa24.89■■□□□ 1.57
SPG7-213ENST00000566221 ZNF608Q9ULD9 1512 aaPredicted RBP24.86■■□□□ 1.57
SPG7-213ENST00000566221 PBRM1Q86U86 1689 aa24.84■■□□□ 1.57
SPG7-213ENST00000566221 KIF27Q86VH2 1401 aa24.78■■□□□ 1.56
SPG7-213ENST00000566221 TDRD9Q8NDG6 1382 aaKnown RBP24.78■■□□□ 1.56
SPG7-213ENST00000566221 GAPVD1Q14C86 1478 aa24.77■■□□□ 1.56
SPG7-213ENST00000566221 AQRO60306 1485 aaKnown RBP eCLIP24.76■■□□□ 1.555e-9■■■□□ 16.9
SPG7-213ENST00000566221 ERICH3Q5RHP9 1530 aa24.71■■□□□ 1.55
SPG7-213ENST00000566221 GRIN2BQ13224 1484 aa24.7■■□□□ 1.55
SPG7-213ENST00000566221 EEA1Q15075 1411 aa24.69■■□□□ 1.54
SPG7-213ENST00000566221 RUSC2Q8N2Y8 1516 aa24.68■■□□□ 1.54
SPG7-213ENST00000566221 OSCARQ8IYS5 282 aa24.66■■□□□ 1.54
SPG7-213ENST00000566221 CUL7Q14999 1698 aa24.66■■□□□ 1.54
SPG7-213ENST00000566221 MAGI1Q96QZ7 1491 aaPredicted RBP24.61■■□□□ 1.53
SPG7-213ENST00000566221 ADAMTS12P58397 1594 aa24.61■■□□□ 1.53
SPG7-213ENST00000566221 SNAPC4Q5SXM2 1469 aa24.6■■□□□ 1.53
SPG7-213ENST00000566221 IGF1RP08069 1367 aa24.55■■□□□ 1.52
SPG7-213ENST00000566221 CHD1O14646 1710 aa24.52■■□□□ 1.52
SPG7-213ENST00000566221 FHAD1B1AJZ9 1412 aa24.5■■□□□ 1.51
SPG7-213ENST00000566221 SYNJ2O15056 1496 aa24.49■■□□□ 1.51
SPG7-213ENST00000566221 FAM9AQ8IZU1 332 aaPredicted RBP24.48■■□□□ 1.51
SPG7-213ENST00000566221 CSRNP3Q8WYN3 585 aa24.47■■□□□ 1.51
SPG7-213ENST00000566221 KIF21BO75037 1637 aa24.46■■□□□ 1.51
SPG7-213ENST00000566221 CARMIL1Q5VZK9 1371 aa24.44■■□□□ 1.5
SPG7-213ENST00000566221 PRXQ9BXM0 1461 aa24.44■■□□□ 1.5
SPG7-213ENST00000566221 RAPGEF2Q9Y4G8 1499 aa24.41■■□□□ 1.5
SPG7-213ENST00000566221 GRIN2AQ12879 1464 aa24.4■■□□□ 1.5
SPG7-213ENST00000566221 CHMP7Q8WUX9 453 aaPredicted RBP24.34■■□□□ 1.49
SPG7-213ENST00000566221 CTTNBP2Q8WZ74 1663 aa24.32■■□□□ 1.48
SPG7-213ENST00000566221 FBLN2P98095 1184 aa24.31■■□□□ 1.48
SPG7-213ENST00000566221 GOLGA3Q08378 1498 aa24.3■■□□□ 1.48
SPG7-213ENST00000566221 RIMBP3CA6NJZ7 1639 aa24.29■■□□□ 1.48
SPG7-213ENST00000566221 RIMBP3BA6NNM3 1639 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms