RNA–Protein interactions for RNA: ENST00000566104.1

TRADD-204, Transcript of TNFRSF1A associated via death domain, humanhuman

TSL 2

Gene TRADD, Length 669 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRADD-204ENST00000566104 NISCHQ9Y2I1 1504 aa49.32■■■■■ 5.49
TRADD-204ENST00000566104 CCDC180Q9P1Z9 1646 aa44.23■■■■■ 4.67
TRADD-204ENST00000566104 ABCC9O60706 1549 aa43.57■■■■■ 4.56
TRADD-204ENST00000566104 RB1CC1Q8TDY2 1594 aa41.82■■■■■ 4.29
TRADD-204ENST00000566104 NACADO15069 1562 aa41.63■■■■■ 4.26
TRADD-204ENST00000566104 DCAF8L2P0C7V8 631 aa41.28■■■■■ 4.2
TRADD-204ENST00000566104 MYO15BQ96JP2 1530 aa41.23■■■■■ 4.19
TRADD-204ENST00000566104 ZCCHC6Q5VYS8 1495 aaKnown RBP41■■■■■ 4.15
TRADD-204ENST00000566104 UNC13AQ9UPW8 1703 aa40.91■■■■■ 4.14
TRADD-204ENST00000566104 DCAF1Q9Y4B6 1507 aa40.84■■■■■ 4.13
TRADD-204ENST00000566104 PABPN1Q86U42 306 aaKnown RBP eCLIP40.53■■■■■ 4.08
TRADD-204ENST00000566104 BICRAQ9NZM4 1560 aa40.49■■■■■ 4.07
TRADD-204ENST00000566104 DNAJC5BQ9UF47 199 aa40.3■■■■■ 4.04
TRADD-204ENST00000566104 SCRIBQ14160 1630 aa40.2■■■■■ 4.03
TRADD-204ENST00000566104 SHROOM4Q9ULL8 1493 aa40.15■■■■■ 4.02
TRADD-204ENST00000566104 EIF4G1Q04637 1599 aaKnown RBP39.5■■■■□ 3.91
TRADD-204ENST00000566104 CC2D2AQ9P2K1 1620 aa39.46■■■■□ 3.91
TRADD-204ENST00000566104 CECR2Q9BXF3 1484 aa39.24■■■■□ 3.87
TRADD-204ENST00000566104 SMARCA4P51532 1647 aa38.43■■■■□ 3.74
TRADD-204ENST00000566104 NCAPD3P42695 1498 aa38.35■■■■□ 3.73
TRADD-204ENST00000566104 BAZ1AQ9NRL2 1556 aaPredicted RBP38.32■■■■□ 3.73
TRADD-204ENST00000566104 SMARCA2P51531 1590 aa38.31■■■■□ 3.72
TRADD-204ENST00000566104 ATAD2BQ9ULI0 1458 aa38.28■■■■□ 3.72
TRADD-204ENST00000566104 HMGXB3Q12766 1538 aa38.2■■■■□ 3.71
TRADD-204ENST00000566104 PEG3Q9GZU2 1588 aa38.07■■■■□ 3.69
TRADD-204ENST00000566104 BAZ1BQ9UIG0 1483 aaKnown RBP37.98■■■■□ 3.67
TRADD-204ENST00000566104 MROH2BQ7Z745 1585 aa37.97■■■■□ 3.67
TRADD-204ENST00000566104 ERCC6Q03468 1493 aa37.67■■■■□ 3.62
TRADD-204ENST00000566104 WIZO95785 1651 aa37.58■■■■□ 3.61
TRADD-204ENST00000566104 NESP48681 1621 aa37.54■■■■□ 3.6
TRADD-204ENST00000566104 LAMC3Q9Y6N6 1575 aa37.51■■■■□ 3.59
TRADD-204ENST00000566104 CUX2O14529 1486 aa37.48■■■■□ 3.59
TRADD-204ENST00000566104 RSF1Q96T23 1441 aaPredicted RBP37.33■■■■□ 3.57
TRADD-204ENST00000566104 KIF21AQ7Z4S6 1674 aa37.21■■■■□ 3.55
TRADD-204ENST00000566104 PDS5BQ9NTI5 1447 aa37.21■■■■□ 3.55
TRADD-204ENST00000566104 THOC2Q8NI27 1593 aaKnown RBP37.2■■■■□ 3.55
TRADD-204ENST00000566104 TOP2AP11388 1531 aaKnown RBP37.18■■■■□ 3.54
TRADD-204ENST00000566104 CADPSQ9ULU8 1353 aa37.17■■■■□ 3.54
TRADD-204ENST00000566104 CFTRP13569 1480 aa36.88■■■■□ 3.49
TRADD-204ENST00000566104 MRC2Q9UBG0 1479 aa36.87■■■■□ 3.49
TRADD-204ENST00000566104 CEP164Q9UPV0 1460 aa36.83■■■■□ 3.49
TRADD-204ENST00000566104 FANCD2Q9BXW9 1451 aa36.79■■■■□ 3.48
TRADD-204ENST00000566104 WDR62O43379 1518 aa36.79■■■■□ 3.48
TRADD-204ENST00000566104 DNAJC5Q9H3Z4 198 aa36.78■■■■□ 3.48
TRADD-204ENST00000566104 PRDM2Q13029 1718 aa36.77■■■■□ 3.48
TRADD-204ENST00000566104 CCDC88BA6NC98 1476 aa36.65■■■■□ 3.46
TRADD-204ENST00000566104 URB2Q14146 1524 aaKnown RBP36.43■■■■□ 3.42
TRADD-204ENST00000566104 ABCC8Q09428 1581 aa36.18■■■■□ 3.38
TRADD-204ENST00000566104 TOPBP1Q92547 1522 aa36.14■■■■□ 3.38
TRADD-204ENST00000566104 DNMBPQ6XZF7 1577 aa36.11■■■■□ 3.37
TRADD-204ENST00000566104 IFT140Q96RY7 1462 aa36.06■■■■□ 3.36
TRADD-204ENST00000566104 SUPT5HO00267 1087 aaKnown RBP35.93■■■■□ 3.34
TRADD-204ENST00000566104 ZNF608Q9ULD9 1512 aaPredicted RBP35.87■■■■□ 3.33
TRADD-204ENST00000566104 EIF4G3O43432 1585 aaKnown RBP35.83■■■■□ 3.33
TRADD-204ENST00000566104 TARBP1Q13395 1621 aaKnown RBP35.82■■■■□ 3.32
TRADD-204ENST00000566104 POLA1P09884 1462 aaPredicted RBP35.8■■■■□ 3.32
TRADD-204ENST00000566104 OSCARQ8IYS5 282 aa35.72■■■■□ 3.31
TRADD-204ENST00000566104 CUX1P39880 1505 aa35.67■■■■□ 3.3
TRADD-204ENST00000566104 FGD5Q6ZNL6 1462 aa35.64■■■■□ 3.3
TRADD-204ENST00000566104 WDR97A6NE52 1622 aa35.61■■■■□ 3.29
TRADD-204ENST00000566104 SOGA1O94964 1423 aa35.61■■■■□ 3.29
TRADD-204ENST00000566104 AQRO60306 1485 aaKnown RBP eCLIP35.59■■■■□ 3.29
TRADD-204ENST00000566104 RAD54L2Q9Y4B4 1467 aa35.59■■■■□ 3.29
TRADD-204ENST00000566104 CHD1O14646 1710 aa35.5■■■■□ 3.27
TRADD-204ENST00000566104 TDRD9Q8NDG6 1382 aaKnown RBP35.43■■■■□ 3.26
TRADD-204ENST00000566104 TRIM41Q8WV44 630 aa35.34■■■■□ 3.25
TRADD-204ENST00000566104 BIVM-ERCC5R4GMW8 1640 aa35.32■■■■□ 3.25
TRADD-204ENST00000566104 SNAPC4Q5SXM2 1469 aa35.32■■■■□ 3.24
TRADD-204ENST00000566104 GRIN2BQ13224 1484 aa35.31■■■■□ 3.24
TRADD-204ENST00000566104 RIMBP3CA6NJZ7 1639 aa35.31■■■■□ 3.24
TRADD-204ENST00000566104 RIMBP3BA6NNM3 1639 aa35.31■■■■□ 3.24
TRADD-204ENST00000566104 RIMBP3Q9UFD9 1639 aa35.31■■■■□ 3.24
TRADD-204ENST00000566104 PBRM1Q86U86 1689 aa35.3■■■■□ 3.24
TRADD-204ENST00000566104 MAGI1Q96QZ7 1491 aaPredicted RBP35.3■■■■□ 3.24
TRADD-204ENST00000566104 TOP2BQ02880 1626 aa35.29■■■■□ 3.24
TRADD-204ENST00000566104 ABCA10Q8WWZ4 1543 aa35.29■■■■□ 3.24
TRADD-204ENST00000566104 WRNQ14191 1432 aaPredicted RBP eCLIP35.26■■■■□ 3.24
TRADD-204ENST00000566104 FBLN2P98095 1184 aa35.26■■■■□ 3.24
TRADD-204ENST00000566104 ABCA5Q8WWZ7 1642 aa35.24■■■■□ 3.23
TRADD-204ENST00000566104 GAPVD1Q14C86 1478 aa35.22■■■■□ 3.23
TRADD-204ENST00000566104 ARHGEF11O15085 1522 aa35.22■■■■□ 3.23
TRADD-204ENST00000566104 SYNJ1O43426 1573 aa35.21■■■■□ 3.23
TRADD-204ENST00000566104 SYNJ2O15056 1496 aa35.15■■■■□ 3.22
TRADD-204ENST00000566104 CHMP7Q8WUX9 453 aaPredicted RBP35.1■■■■□ 3.21
TRADD-204ENST00000566104 CLASP1Q7Z460 1538 aa35.05■■■■□ 3.2
TRADD-204ENST00000566104 ADAMTS12P58397 1594 aa34.94■■■■□ 3.18
TRADD-204ENST00000566104 ERICH3Q5RHP9 1530 aa34.89■■■■□ 3.18
TRADD-204ENST00000566104 ARAP1Q96P48 1450 aa34.87■■■■□ 3.17
TRADD-204ENST00000566104 GRIN2AQ12879 1464 aa34.85■■■■□ 3.17
TRADD-204ENST00000566104 CYB5RLQ6IPT4 315 aa34.81■■■■□ 3.16
TRADD-204ENST00000566104 FHAD1B1AJZ9 1412 aa34.81■■■■□ 3.16
TRADD-204ENST00000566104 CEP170Q5SW79 1584 aa34.7■■■■□ 3.15
TRADD-204ENST00000566104 NUP160Q12769 1436 aa34.7■■■■□ 3.15
TRADD-204ENST00000566104 KIF27Q86VH2 1401 aa34.57■■■■□ 3.13
TRADD-204ENST00000566104 SHROOM2Q13796 1616 aa34.56■■■■□ 3.12
TRADD-204ENST00000566104 CUL7Q14999 1698 aa34.54■■■■□ 3.12
TRADD-204ENST00000566104 RUSC2Q8N2Y8 1516 aa34.45■■■■□ 3.1
TRADD-204ENST00000566104 ERCC6L2Q5T890 1561 aa34.45■■■■□ 3.1
TRADD-204ENST00000566104 IGF1RP08069 1367 aa34.4■■■■□ 3.1
TRADD-204ENST00000566104 TRHP20396 242 aaPredicted RBP34.32■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms