RNA–Protein interactions for RNA: ENST00000565662.5

USB1-211, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 719 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-211ENST00000565662 NISCHQ9Y2I1 1504 aa41.18■■■■■ 4.18
USB1-211ENST00000565662 CCDC180Q9P1Z9 1646 aa36.98■■■■□ 3.51
USB1-211ENST00000565662 ABCC9O60706 1549 aa36.17■■■■□ 3.38
USB1-211ENST00000565662 RB1CC1Q8TDY2 1594 aa34.91■■■■□ 3.18
USB1-211ENST00000565662 NACADO15069 1562 aa34.8■■■■□ 3.16
USB1-211ENST00000565662 MYO15BQ96JP2 1530 aa34.56■■■■□ 3.12
USB1-211ENST00000565662 DCAF8L2P0C7V8 631 aa34.31■■■■□ 3.08
USB1-211ENST00000565662 ZCCHC6Q5VYS8 1495 aaKnown RBP34.27■■■■□ 3.08
USB1-211ENST00000565662 DCAF1Q9Y4B6 1507 aa34.24■■■■□ 3.07
USB1-211ENST00000565662 UNC13AQ9UPW8 1703 aa33.96■■■■□ 3.03
USB1-211ENST00000565662 SHROOM4Q9ULL8 1493 aa33.68■■■□□ 2.98
USB1-211ENST00000565662 BICRAQ9NZM4 1560 aa33.67■■■□□ 2.98
USB1-211ENST00000565662 PABPN1Q86U42 306 aaKnown RBP eCLIP33.6■■■□□ 2.97
USB1-211ENST00000565662 SCRIBQ14160 1630 aa33.45■■■□□ 2.95
USB1-211ENST00000565662 DNAJC5BQ9UF47 199 aa33.28■■■□□ 2.92
USB1-211ENST00000565662 EIF4G1Q04637 1599 aaKnown RBP32.89■■■□□ 2.86
USB1-211ENST00000565662 CC2D2AQ9P2K1 1620 aa32.8■■■□□ 2.84
USB1-211ENST00000565662 CECR2Q9BXF3 1484 aa32.64■■■□□ 2.82
USB1-211ENST00000565662 SMARCA4P51532 1647 aa32.06■■■□□ 2.72
USB1-211ENST00000565662 BAZ1AQ9NRL2 1556 aaPredicted RBP32.06■■■□□ 2.72
USB1-211ENST00000565662 SMARCA2P51531 1590 aa32.03■■■□□ 2.72
USB1-211ENST00000565662 NCAPD3P42695 1498 aa32.02■■■□□ 2.72
USB1-211ENST00000565662 HMGXB3Q12766 1538 aa31.93■■■□□ 2.7
USB1-211ENST00000565662 ATAD2BQ9ULI0 1458 aa31.92■■■□□ 2.7
USB1-211ENST00000565662 PEG3Q9GZU2 1588 aa31.85■■■□□ 2.69
USB1-211ENST00000565662 BAZ1BQ9UIG0 1483 aaKnown RBP31.71■■■□□ 2.67
USB1-211ENST00000565662 MROH2BQ7Z745 1585 aa31.62■■■□□ 2.65
USB1-211ENST00000565662 ERCC6Q03468 1493 aa31.37■■■□□ 2.61
USB1-211ENST00000565662 LAMC3Q9Y6N6 1575 aa31.33■■■□□ 2.61
USB1-211ENST00000565662 WIZO95785 1651 aa31.27■■■□□ 2.6
USB1-211ENST00000565662 CUX2O14529 1486 aa31.27■■■□□ 2.6
USB1-211ENST00000565662 RSF1Q96T23 1441 aaPredicted RBP31.15■■■□□ 2.58
USB1-211ENST00000565662 NESP48681 1621 aa31.14■■■□□ 2.58
USB1-211ENST00000565662 PDS5BQ9NTI5 1447 aa31.09■■■□□ 2.57
USB1-211ENST00000565662 TOP2AP11388 1531 aaKnown RBP31.08■■■□□ 2.57
USB1-211ENST00000565662 CADPSQ9ULU8 1353 aa31.04■■■□□ 2.56
USB1-211ENST00000565662 THOC2Q8NI27 1593 aaKnown RBP30.94■■■□□ 2.54
USB1-211ENST00000565662 KIF21AQ7Z4S6 1674 aa30.92■■■□□ 2.54
USB1-211ENST00000565662 CFTRP13569 1480 aa30.8■■■□□ 2.52
USB1-211ENST00000565662 MRC2Q9UBG0 1479 aa30.75■■■□□ 2.51
USB1-211ENST00000565662 CEP164Q9UPV0 1460 aa30.74■■■□□ 2.51
USB1-211ENST00000565662 PRDM2Q13029 1718 aa30.7■■■□□ 2.5
USB1-211ENST00000565662 WDR62O43379 1518 aa30.68■■■□□ 2.5
USB1-211ENST00000565662 FANCD2Q9BXW9 1451 aa30.67■■■□□ 2.5
USB1-211ENST00000565662 CCDC88BA6NC98 1476 aa30.57■■■□□ 2.48
USB1-211ENST00000565662 DNAJC5Q9H3Z4 198 aa30.49■■■□□ 2.47
USB1-211ENST00000565662 ABCC8Q09428 1581 aa30.32■■■□□ 2.44
USB1-211ENST00000565662 URB2Q14146 1524 aaKnown RBP30.32■■■□□ 2.44
USB1-211ENST00000565662 DNMBPQ6XZF7 1577 aa30.15■■■□□ 2.42
USB1-211ENST00000565662 TOPBP1Q92547 1522 aa30.13■■■□□ 2.41
USB1-211ENST00000565662 IFT140Q96RY7 1462 aa30.12■■■□□ 2.41
USB1-211ENST00000565662 SUPT5HO00267 1087 aaKnown RBP29.95■■■□□ 2.39
USB1-211ENST00000565662 WDR97A6NE52 1622 aa29.86■■■□□ 2.37
USB1-211ENST00000565662 POLA1P09884 1462 aaPredicted RBP29.85■■■□□ 2.37
USB1-211ENST00000565662 TARBP1Q13395 1621 aaKnown RBP29.84■■■□□ 2.37
USB1-211ENST00000565662 EIF4G3O43432 1585 aaKnown RBP29.83■■■□□ 2.37
USB1-211ENST00000565662 ZNF608Q9ULD9 1512 aaPredicted RBP29.8■■■□□ 2.36
USB1-211ENST00000565662 OSCARQ8IYS5 282 aa29.75■■■□□ 2.35
USB1-211ENST00000565662 CUX1P39880 1505 aa29.71■■■□□ 2.35
USB1-211ENST00000565662 FGD5Q6ZNL6 1462 aa29.71■■■□□ 2.35
USB1-211ENST00000565662 SOGA1O94964 1423 aa29.71■■■□□ 2.35
USB1-211ENST00000565662 AQRO60306 1485 aaKnown RBP eCLIP29.59■■■□□ 2.33
USB1-211ENST00000565662 RAD54L2Q9Y4B4 1467 aa29.59■■■□□ 2.33
USB1-211ENST00000565662 BIVM-ERCC5R4GMW8 1640 aa29.52■■■□□ 2.32
USB1-211ENST00000565662 MAGI1Q96QZ7 1491 aaPredicted RBP29.5■■■□□ 2.31
USB1-211ENST00000565662 TOP2BQ02880 1626 aa29.49■■■□□ 2.31
USB1-211ENST00000565662 CHD1O14646 1710 aa29.49■■■□□ 2.31
USB1-211ENST00000565662 ABCA10Q8WWZ4 1543 aa29.49■■■□□ 2.31
USB1-211ENST00000565662 GRIN2BQ13224 1484 aa29.48■■■□□ 2.31
USB1-211ENST00000565662 WRNQ14191 1432 aaPredicted RBP eCLIP29.47■■■□□ 2.31
USB1-211ENST00000565662 TDRD9Q8NDG6 1382 aaKnown RBP29.47■■■□□ 2.31
USB1-211ENST00000565662 SNAPC4Q5SXM2 1469 aa29.42■■■□□ 2.3
USB1-211ENST00000565662 PBRM1Q86U86 1689 aa29.41■■■□□ 2.3
USB1-211ENST00000565662 ABCA5Q8WWZ7 1642 aa29.4■■■□□ 2.3
USB1-211ENST00000565662 GAPVD1Q14C86 1478 aa29.4■■■□□ 2.3
USB1-211ENST00000565662 SYNJ2O15056 1496 aa29.35■■■□□ 2.29
USB1-211ENST00000565662 SYNJ1O43426 1573 aa29.34■■■□□ 2.29
USB1-211ENST00000565662 RIMBP3CA6NJZ7 1639 aa29.31■■■□□ 2.28
USB1-211ENST00000565662 RIMBP3BA6NNM3 1639 aa29.31■■■□□ 2.28
USB1-211ENST00000565662 RIMBP3Q9UFD9 1639 aa29.31■■■□□ 2.28
USB1-211ENST00000565662 FBLN2P98095 1184 aa29.3■■■□□ 2.28
USB1-211ENST00000565662 ARHGEF11O15085 1522 aa29.29■■■□□ 2.28
USB1-211ENST00000565662 CHMP7Q8WUX9 453 aaPredicted RBP29.27■■■□□ 2.28
USB1-211ENST00000565662 TRIM41Q8WV44 630 aa29.23■■■□□ 2.27
USB1-211ENST00000565662 ERICH3Q5RHP9 1530 aa29.2■■■□□ 2.26
USB1-211ENST00000565662 CLASP1Q7Z460 1538 aa29.19■■■□□ 2.26
USB1-211ENST00000565662 ADAMTS12P58397 1594 aa29.14■■■□□ 2.26
USB1-211ENST00000565662 FHAD1B1AJZ9 1412 aa29.09■■■□□ 2.25
USB1-211ENST00000565662 GRIN2AQ12879 1464 aa29.08■■■□□ 2.25
USB1-211ENST00000565662 ARAP1Q96P48 1450 aa28.97■■■□□ 2.23
USB1-211ENST00000565662 NUP160Q12769 1436 aa28.97■■■□□ 2.23
USB1-211ENST00000565662 KIF27Q86VH2 1401 aa28.94■■■□□ 2.22
USB1-211ENST00000565662 CUL7Q14999 1698 aa28.9■■■□□ 2.22
USB1-211ENST00000565662 CYB5RLQ6IPT4 315 aa28.89■■■□□ 2.22
USB1-211ENST00000565662 CEP170Q5SW79 1584 aa28.88■■■□□ 2.21
USB1-211ENST00000565662 SHROOM2Q13796 1616 aa28.82■■■□□ 2.2
USB1-211ENST00000565662 RUSC2Q8N2Y8 1516 aa28.73■■■□□ 2.19
USB1-211ENST00000565662 IGF1RP08069 1367 aa28.71■■■□□ 2.19
USB1-211ENST00000565662 KIAA0586Q9BVV6 1533 aa28.63■■■□□ 2.17
USB1-211ENST00000565662 CARMIL1Q5VZK9 1371 aa28.6■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms