RNA–Protein interactions for RNA: ENST00000565602.5

EDC3-208, Transcript of enhancer of mRNA decapping 3, humanhuman

TSL 5

Gene EDC3, Length 1,862 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDC3-208ENST00000565602 NISCHQ9Y2I1 1504 aa42.98■■■■■ 4.47
EDC3-208ENST00000565602 CCDC180Q9P1Z9 1646 aa37.9■■■■□ 3.66
EDC3-208ENST00000565602 ABCC9O60706 1549 aa36.28■■■■□ 3.4
EDC3-208ENST00000565602 ZCCHC6Q5VYS8 1495 aaKnown RBP35.99■■■■□ 3.35
EDC3-208ENST00000565602 DCAF1Q9Y4B6 1507 aa35.58■■■■□ 3.29
EDC3-208ENST00000565602 DCAF8L2P0C7V8 631 aa35.46■■■■□ 3.27
EDC3-208ENST00000565602 MYO15BQ96JP2 1530 aa35.43■■■■□ 3.26
EDC3-208ENST00000565602 NACADO15069 1562 aa35.38■■■■□ 3.26
EDC3-208ENST00000565602 RB1CC1Q8TDY2 1594 aa35.23■■■■□ 3.23
EDC3-208ENST00000565602 SCRIBQ14160 1630 aa34.65■■■■□ 3.14
EDC3-208ENST00000565602 UNC13AQ9UPW8 1703 aa34.63■■■■□ 3.13
EDC3-208ENST00000565602 SHROOM4Q9ULL8 1493 aa34.42■■■■□ 3.1
EDC3-208ENST00000565602 BICRAQ9NZM4 1560 aa34.25■■■■□ 3.07
EDC3-208ENST00000565602 PABPN1Q86U42 306 aaKnown RBP eCLIP34■■■■□ 3.03
EDC3-208ENST00000565602 CECR2Q9BXF3 1484 aa33.43■■■□□ 2.94
EDC3-208ENST00000565602 BAZ1AQ9NRL2 1556 aaPredicted RBP33.24■■■□□ 2.91
EDC3-208ENST00000565602 EIF4G1Q04637 1599 aaKnown RBP33.22■■■□□ 2.91
EDC3-208ENST00000565602 SMARCA4P51532 1647 aa33.22■■■□□ 2.91
EDC3-208ENST00000565602 MROH2BQ7Z745 1585 aa33.17■■■□□ 2.9
EDC3-208ENST00000565602 RSF1Q96T23 1441 aaPredicted RBP33.04■■■□□ 2.88
EDC3-208ENST00000565602 CC2D2AQ9P2K1 1620 aa32.9■■■□□ 2.86
EDC3-208ENST00000565602 WIZO95785 1651 aa32.89■■■□□ 2.86
EDC3-208ENST00000565602 PEG3Q9GZU2 1588 aa32.88■■■□□ 2.85
EDC3-208ENST00000565602 ATAD2BQ9ULI0 1458 aa32.79■■■□□ 2.84
EDC3-208ENST00000565602 SMARCA2P51531 1590 aa32.76■■■□□ 2.84
EDC3-208ENST00000565602 SUPT5HO00267 1087 aaKnown RBP32.72■■■□□ 2.83
EDC3-208ENST00000565602 NCAPD3P42695 1498 aa32.63■■■□□ 2.81
EDC3-208ENST00000565602 DNAJC5BQ9UF47 199 aa32.61■■■□□ 2.81
EDC3-208ENST00000565602 HMGXB3Q12766 1538 aa32.58■■■□□ 2.81
EDC3-208ENST00000565602 BAZ1BQ9UIG0 1483 aaKnown RBP32.54■■■□□ 2.8
EDC3-208ENST00000565602 TOP2AP11388 1531 aaKnown RBP32.53■■■□□ 2.8
EDC3-208ENST00000565602 CCDC88BA6NC98 1476 aa32.14■■■□□ 2.74
EDC3-208ENST00000565602 CFTRP13569 1480 aa31.72■■■□□ 2.67
EDC3-208ENST00000565602 CADPSQ9ULU8 1353 aa31.7■■■□□ 2.67
EDC3-208ENST00000565602 NESP48681 1621 aa31.68■■■□□ 2.66
EDC3-208ENST00000565602 LAMC3Q9Y6N6 1575 aa31.67■■■□□ 2.66
EDC3-208ENST00000565602 PRDM2Q13029 1718 aa31.66■■■□□ 2.66
EDC3-208ENST00000565602 KIF21AQ7Z4S6 1674 aa31.38■■■□□ 2.61
EDC3-208ENST00000565602 FANCD2Q9BXW9 1451 aa31.36■■■□□ 2.61
EDC3-208ENST00000565602 PDS5BQ9NTI5 1447 aa31.35■■■□□ 2.61
EDC3-208ENST00000565602 ABCC8Q09428 1581 aa31.25■■■□□ 2.59
EDC3-208ENST00000565602 CHIC1Q5VXU3 224 aa31.25■■■□□ 2.59
EDC3-208ENST00000565602 CEP164Q9UPV0 1460 aa31.24■■■□□ 2.59
EDC3-208ENST00000565602 ERCC6Q03468 1493 aa31.14■■■□□ 2.58
EDC3-208ENST00000565602 WRNQ14191 1432 aaPredicted RBP eCLIP31.09■■■□□ 2.57
EDC3-208ENST00000565602 SYNJ1O43426 1573 aa31.07■■■□□ 2.57
EDC3-208ENST00000565602 CUX1P39880 1505 aa31.07■■■□□ 2.56
EDC3-208ENST00000565602 THOC2Q8NI27 1593 aaKnown RBP31.06■■■□□ 2.56
EDC3-208ENST00000565602 URB2Q14146 1524 aaKnown RBP31.05■■■□□ 2.56
EDC3-208ENST00000565602 MRC2Q9UBG0 1479 aa31.04■■■□□ 2.56
EDC3-208ENST00000565602 BIVM-ERCC5R4GMW8 1640 aa31.03■■■□□ 2.56
EDC3-208ENST00000565602 DNMBPQ6XZF7 1577 aa31.01■■■□□ 2.56
EDC3-208ENST00000565602 TOP2BQ02880 1626 aa31■■■□□ 2.55
EDC3-208ENST00000565602 TOPBP1Q92547 1522 aa30.98■■■□□ 2.55
EDC3-208ENST00000565602 WDR62O43379 1518 aa30.96■■■□□ 2.55
EDC3-208ENST00000565602 TRIM41Q8WV44 630 aa30.84■■■□□ 2.53
EDC3-208ENST00000565602 FGD5Q6ZNL6 1462 aa30.81■■■□□ 2.52
EDC3-208ENST00000565602 POLA1P09884 1462 aaPredicted RBP30.77■■■□□ 2.52
EDC3-208ENST00000565602 CUX2O14529 1486 aa30.68■■■□□ 2.5
EDC3-208ENST00000565602 RAD54L2Q9Y4B4 1467 aa30.64■■■□□ 2.49
EDC3-208ENST00000565602 TARBP1Q13395 1621 aaKnown RBP30.64■■■□□ 2.49
EDC3-208ENST00000565602 WDR97A6NE52 1622 aa30.61■■■□□ 2.49
EDC3-208ENST00000565602 SOGA1O94964 1423 aa30.6■■■□□ 2.49
EDC3-208ENST00000565602 ABCA10Q8WWZ4 1543 aa30.54■■■□□ 2.48
EDC3-208ENST00000565602 IFT140Q96RY7 1462 aa30.54■■■□□ 2.48
EDC3-208ENST00000565602 RUSC2Q8N2Y8 1516 aa30.44■■■□□ 2.46
EDC3-208ENST00000565602 ABCA5Q8WWZ7 1642 aa30.41■■■□□ 2.46
EDC3-208ENST00000565602 ZNF608Q9ULD9 1512 aaPredicted RBP30.4■■■□□ 2.46
EDC3-208ENST00000565602 KIF27Q86VH2 1401 aa30.35■■■□□ 2.45
EDC3-208ENST00000565602 TDRD9Q8NDG6 1382 aaKnown RBP30.35■■■□□ 2.45
EDC3-208ENST00000565602 EIF4G3O43432 1585 aaKnown RBP30.35■■■□□ 2.45
EDC3-208ENST00000565602 AQRO60306 1485 aaKnown RBP eCLIP30.3■■■□□ 2.445e-8■■■■□ 24.7
EDC3-208ENST00000565602 GAPVD1Q14C86 1478 aa30.28■■■□□ 2.44
EDC3-208ENST00000565602 EEA1Q15075 1411 aa30.28■■■□□ 2.44
EDC3-208ENST00000565602 PBRM1Q86U86 1689 aa30.28■■■□□ 2.44
EDC3-208ENST00000565602 FAM9AQ8IZU1 332 aaPredicted RBP30.22■■■□□ 2.43
EDC3-208ENST00000565602 ERICH3Q5RHP9 1530 aa30.18■■■□□ 2.42
EDC3-208ENST00000565602 IGF1RP08069 1367 aa30.17■■■□□ 2.42
EDC3-208ENST00000565602 GRIN2BQ13224 1484 aa30.15■■■□□ 2.42
EDC3-208ENST00000565602 CSRNP3Q8WYN3 585 aa30.12■■■□□ 2.41
EDC3-208ENST00000565602 CUL7Q14999 1698 aa30.09■■■□□ 2.41
EDC3-208ENST00000565602 SNAPC4Q5SXM2 1469 aa30.05■■■□□ 2.4
EDC3-208ENST00000565602 ADAMTS12P58397 1594 aa30.05■■■□□ 2.4
EDC3-208ENST00000565602 PRXQ9BXM0 1461 aa30.04■■■□□ 2.4
EDC3-208ENST00000565602 LOC105371045A0A1W2PR82 267 aa30.03■■■□□ 2.4
EDC3-208ENST00000565602 KIF21BO75037 1637 aa30.01■■■□□ 2.39
EDC3-208ENST00000565602 MAGI1Q96QZ7 1491 aaPredicted RBP30.01■■■□□ 2.39
EDC3-208ENST00000565602 CARMIL1Q5VZK9 1371 aa29.98■■■□□ 2.39
EDC3-208ENST00000565602 FHAD1B1AJZ9 1412 aa29.94■■■□□ 2.38
EDC3-208ENST00000565602 RAPGEF2Q9Y4G8 1499 aa29.91■■■□□ 2.38
EDC3-208ENST00000565602 SYNJ2O15056 1496 aa29.88■■■□□ 2.37
EDC3-208ENST00000565602 CHD1O14646 1710 aa29.85■■■□□ 2.37
EDC3-208ENST00000565602 GOLGA3Q08378 1498 aa29.84■■■□□ 2.37
EDC3-208ENST00000565602 GRIN2AQ12879 1464 aa29.81■■■□□ 2.36
EDC3-208ENST00000565602 EHMT2Q96KQ7 1210 aa29.78■■■□□ 2.36
EDC3-208ENST00000565602 CHMP7Q8WUX9 453 aaPredicted RBP29.72■■■□□ 2.35
EDC3-208ENST00000565602 CTTNBP2Q8WZ74 1663 aa29.69■■■□□ 2.34
EDC3-208ENST00000565602 FBLN2P98095 1184 aa29.69■■■□□ 2.34
EDC3-208ENST00000565602 CEP170Q5SW79 1584 aa29.68■■■□□ 2.34
EDC3-208ENST00000565602 NUP160Q12769 1436 aa29.64■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms