RNA–Protein interactions for RNA: ENST00000565517.5

COMMD4-212, Transcript of COMM domain containing 4, humanhuman

TSL 4

Gene COMMD4, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-212ENST00000565517 NISCHQ9Y2I1 1504 aa37.62■■■■□ 3.61
COMMD4-212ENST00000565517 CCDC180Q9P1Z9 1646 aa33.53■■■□□ 2.96
COMMD4-212ENST00000565517 ABCC9O60706 1549 aa32.77■■■□□ 2.84
COMMD4-212ENST00000565517 RB1CC1Q8TDY2 1594 aa31.56■■■□□ 2.64
COMMD4-212ENST00000565517 NACADO15069 1562 aa31.52■■■□□ 2.64
COMMD4-212ENST00000565517 DCAF8L2P0C7V8 631 aa31.4■■■□□ 2.62
COMMD4-212ENST00000565517 MYO15BQ96JP2 1530 aa31.35■■■□□ 2.61
COMMD4-212ENST00000565517 ZCCHC6Q5VYS8 1495 aaKnown RBP31.32■■■□□ 2.6
COMMD4-212ENST00000565517 DCAF1Q9Y4B6 1507 aa31.18■■■□□ 2.58
COMMD4-212ENST00000565517 UNC13AQ9UPW8 1703 aa30.87■■■□□ 2.53
COMMD4-212ENST00000565517 PABPN1Q86U42 306 aaKnown RBP eCLIP30.6■■■□□ 2.49
COMMD4-212ENST00000565517 BICRAQ9NZM4 1560 aa30.59■■■□□ 2.49
COMMD4-212ENST00000565517 SCRIBQ14160 1630 aa30.5■■■□□ 2.47
COMMD4-212ENST00000565517 SHROOM4Q9ULL8 1493 aa30.31■■■□□ 2.44
COMMD4-212ENST00000565517 DNAJC5BQ9UF47 199 aa30.15■■■□□ 2.42
COMMD4-212ENST00000565517 EIF4G1Q04637 1599 aaKnown RBP29.78■■■□□ 2.36
COMMD4-212ENST00000565517 CC2D2AQ9P2K1 1620 aa29.68■■■□□ 2.34
COMMD4-212ENST00000565517 CECR2Q9BXF3 1484 aa29.48■■■□□ 2.31
COMMD4-212ENST00000565517 SMARCA4P51532 1647 aa29.21■■■□□ 2.27
COMMD4-212ENST00000565517 BAZ1AQ9NRL2 1556 aaPredicted RBP29.18■■■□□ 2.26
COMMD4-212ENST00000565517 NCAPD3P42695 1498 aa29.08■■■□□ 2.25
COMMD4-212ENST00000565517 ATAD2BQ9ULI0 1458 aa29.06■■■□□ 2.24
COMMD4-212ENST00000565517 SMARCA2P51531 1590 aa29.05■■■□□ 2.24
COMMD4-212ENST00000565517 MROH2BQ7Z745 1585 aa28.96■■■□□ 2.23
COMMD4-212ENST00000565517 PEG3Q9GZU2 1588 aa28.96■■■□□ 2.23
COMMD4-212ENST00000565517 HMGXB3Q12766 1538 aa28.93■■■□□ 2.22
COMMD4-212ENST00000565517 BAZ1BQ9UIG0 1483 aaKnown RBP28.8■■■□□ 2.2
COMMD4-212ENST00000565517 WIZO95785 1651 aa28.67■■■□□ 2.18
COMMD4-212ENST00000565517 RSF1Q96T23 1441 aaPredicted RBP28.62■■■□□ 2.17
COMMD4-212ENST00000565517 TOP2AP11388 1531 aaKnown RBP28.36■■■□□ 2.13
COMMD4-212ENST00000565517 NESP48681 1621 aa28.34■■■□□ 2.13
COMMD4-212ENST00000565517 LAMC3Q9Y6N6 1575 aa28.33■■■□□ 2.13
COMMD4-212ENST00000565517 ERCC6Q03468 1493 aa28.26■■■□□ 2.11
COMMD4-212ENST00000565517 CADPSQ9ULU8 1353 aa28.22■■■□□ 2.11
COMMD4-212ENST00000565517 PDS5BQ9NTI5 1447 aa28.13■■■□□ 2.09
COMMD4-212ENST00000565517 KIF21AQ7Z4S6 1674 aa28.05■■■□□ 2.08
COMMD4-212ENST00000565517 CUX2O14529 1486 aa28.04■■■□□ 2.08
COMMD4-212ENST00000565517 CFTRP13569 1480 aa28.03■■■□□ 2.08
COMMD4-212ENST00000565517 CCDC88BA6NC98 1476 aa28.02■■■□□ 2.08
COMMD4-212ENST00000565517 THOC2Q8NI27 1593 aaKnown RBP27.96■■■□□ 2.07
COMMD4-212ENST00000565517 PRDM2Q13029 1718 aa27.88■■■□□ 2.05
COMMD4-212ENST00000565517 FANCD2Q9BXW9 1451 aa27.87■■■□□ 2.05
COMMD4-212ENST00000565517 CEP164Q9UPV0 1460 aa27.84■■■□□ 2.05
COMMD4-212ENST00000565517 MRC2Q9UBG0 1479 aa27.82■■■□□ 2.04
COMMD4-212ENST00000565517 SUPT5HO00267 1087 aaKnown RBP27.79■■■□□ 2.04
COMMD4-212ENST00000565517 WDR62O43379 1518 aa27.74■■■□□ 2.03
COMMD4-212ENST00000565517 URB2Q14146 1524 aaKnown RBP27.59■■■□□ 2.01
COMMD4-212ENST00000565517 ABCC8Q09428 1581 aa27.48■■□□□ 1.99
COMMD4-212ENST00000565517 TOPBP1Q92547 1522 aa27.42■■□□□ 1.98
COMMD4-212ENST00000565517 DNMBPQ6XZF7 1577 aa27.39■■□□□ 1.98
COMMD4-212ENST00000565517 IFT140Q96RY7 1462 aa27.28■■□□□ 1.96
COMMD4-212ENST00000565517 DNAJC5Q9H3Z4 198 aa27.25■■□□□ 1.95
COMMD4-212ENST00000565517 CUX1P39880 1505 aa27.18■■□□□ 1.94
COMMD4-212ENST00000565517 POLA1P09884 1462 aaPredicted RBP27.18■■□□□ 1.94
COMMD4-212ENST00000565517 TARBP1Q13395 1621 aaKnown RBP27.15■■□□□ 1.94
COMMD4-212ENST00000565517 ZNF608Q9ULD9 1512 aaPredicted RBP27.12■■□□□ 1.93
COMMD4-212ENST00000565517 FGD5Q6ZNL6 1462 aa27.1■■□□□ 1.93
COMMD4-212ENST00000565517 SOGA1O94964 1423 aa27.08■■□□□ 1.93
COMMD4-212ENST00000565517 RAD54L2Q9Y4B4 1467 aa27.04■■□□□ 1.92
COMMD4-212ENST00000565517 EIF4G3O43432 1585 aaKnown RBP27.03■■□□□ 1.92
COMMD4-212ENST00000565517 WRNQ14191 1432 aaPredicted RBP eCLIP26.99■■□□□ 1.91
COMMD4-212ENST00000565517 WDR97A6NE52 1622 aa26.98■■□□□ 1.91
COMMD4-212ENST00000565517 AQRO60306 1485 aaKnown RBP eCLIP26.97■■□□□ 1.91
COMMD4-212ENST00000565517 BIVM-ERCC5R4GMW8 1640 aa26.97■■□□□ 1.91
COMMD4-212ENST00000565517 TOP2BQ02880 1626 aa26.96■■□□□ 1.91
COMMD4-212ENST00000565517 SYNJ1O43426 1573 aa26.92■■□□□ 1.9
COMMD4-212ENST00000565517 TDRD9Q8NDG6 1382 aaKnown RBP26.9■■□□□ 1.9
COMMD4-212ENST00000565517 ABCA10Q8WWZ4 1543 aa26.86■■□□□ 1.89
COMMD4-212ENST00000565517 OSCARQ8IYS5 282 aa26.86■■□□□ 1.89
COMMD4-212ENST00000565517 GRIN2BQ13224 1484 aa26.77■■□□□ 1.88
COMMD4-212ENST00000565517 GAPVD1Q14C86 1478 aa26.76■■□□□ 1.87
COMMD4-212ENST00000565517 ABCA5Q8WWZ7 1642 aa26.76■■□□□ 1.87
COMMD4-212ENST00000565517 PBRM1Q86U86 1689 aa26.73■■□□□ 1.87
COMMD4-212ENST00000565517 MAGI1Q96QZ7 1491 aaPredicted RBP26.73■■□□□ 1.87
COMMD4-212ENST00000565517 CHD1O14646 1710 aa26.73■■□□□ 1.87
COMMD4-212ENST00000565517 SNAPC4Q5SXM2 1469 aa26.71■■□□□ 1.87
COMMD4-212ENST00000565517 FBLN2P98095 1184 aa26.64■■□□□ 1.86
COMMD4-212ENST00000565517 SYNJ2O15056 1496 aa26.61■■□□□ 1.85
COMMD4-212ENST00000565517 CHMP7Q8WUX9 453 aaPredicted RBP26.6■■□□□ 1.85
COMMD4-212ENST00000565517 ERICH3Q5RHP9 1530 aa26.55■■□□□ 1.84
COMMD4-212ENST00000565517 ADAMTS12P58397 1594 aa26.48■■□□□ 1.83
COMMD4-212ENST00000565517 FHAD1B1AJZ9 1412 aa26.46■■□□□ 1.83
COMMD4-212ENST00000565517 KIF27Q86VH2 1401 aa26.44■■□□□ 1.82
COMMD4-212ENST00000565517 CLASP1Q7Z460 1538 aa26.43■■□□□ 1.82
COMMD4-212ENST00000565517 GRIN2AQ12879 1464 aa26.42■■□□□ 1.82
COMMD4-212ENST00000565517 RIMBP3CA6NJZ7 1639 aa26.42■■□□□ 1.82
COMMD4-212ENST00000565517 RIMBP3BA6NNM3 1639 aa26.42■■□□□ 1.82
COMMD4-212ENST00000565517 RIMBP3Q9UFD9 1639 aa26.42■■□□□ 1.82
COMMD4-212ENST00000565517 ARHGEF11O15085 1522 aa26.39■■□□□ 1.82
COMMD4-212ENST00000565517 IGF1RP08069 1367 aa26.34■■□□□ 1.81
COMMD4-212ENST00000565517 NUP160Q12769 1436 aa26.32■■□□□ 1.8
COMMD4-212ENST00000565517 CUL7Q14999 1698 aa26.31■■□□□ 1.8
COMMD4-212ENST00000565517 TRIM41Q8WV44 630 aa26.3■■□□□ 1.8
COMMD4-212ENST00000565517 CEP170Q5SW79 1584 aa26.29■■□□□ 1.8
COMMD4-212ENST00000565517 CARMIL1Q5VZK9 1371 aa26.19■■□□□ 1.78
COMMD4-212ENST00000565517 ARAP1Q96P48 1450 aa26.17■■□□□ 1.78
COMMD4-212ENST00000565517 CYB5RLQ6IPT4 315 aa26.15■■□□□ 1.78
COMMD4-212ENST00000565517 RUSC2Q8N2Y8 1516 aa26.14■■□□□ 1.78
COMMD4-212ENST00000565517 SHROOM2Q13796 1616 aa26.14■■□□□ 1.78
COMMD4-212ENST00000565517 KIAA0586Q9BVV6 1533 aa26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms