RNA–Protein interactions for RNA: ENST00000565370.1

SPG7-211, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 3

Gene SPG7, Length 686 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-211ENST00000565370 NISCHQ9Y2I1 1504 aa30.13■■■□□ 2.41
SPG7-211ENST00000565370 CCDC180Q9P1Z9 1646 aa26.99■■□□□ 1.91
SPG7-211ENST00000565370 ABCC9O60706 1549 aa26.43■■□□□ 1.82
SPG7-211ENST00000565370 RB1CC1Q8TDY2 1594 aa25.45■■□□□ 1.66
SPG7-211ENST00000565370 NACADO15069 1562 aa25.35■■□□□ 1.65
SPG7-211ENST00000565370 DNAJC5BQ9UF47 199 aa25.17■■□□□ 1.62
SPG7-211ENST00000565370 MYO15BQ96JP2 1530 aa25.15■■□□□ 1.62
SPG7-211ENST00000565370 DCAF8L2P0C7V8 631 aa25.14■■□□□ 1.62
SPG7-211ENST00000565370 ZCCHC6Q5VYS8 1495 aaKnown RBP25.11■■□□□ 1.61
SPG7-211ENST00000565370 DCAF1Q9Y4B6 1507 aa24.97■■□□□ 1.59
SPG7-211ENST00000565370 UNC13AQ9UPW8 1703 aa24.83■■□□□ 1.57
SPG7-211ENST00000565370 BICRAQ9NZM4 1560 aa24.59■■□□□ 1.53
SPG7-211ENST00000565370 PABPN1Q86U42 306 aaKnown RBP eCLIP24.58■■□□□ 1.533e-9■■■■□ 25.6
SPG7-211ENST00000565370 SCRIBQ14160 1630 aa24.55■■□□□ 1.52
SPG7-211ENST00000565370 SHROOM4Q9ULL8 1493 aa24.47■■□□□ 1.51
SPG7-211ENST00000565370 EIF4G1Q04637 1599 aaKnown RBP24■■□□□ 1.43
SPG7-211ENST00000565370 CC2D2AQ9P2K1 1620 aa23.93■■□□□ 1.42
SPG7-211ENST00000565370 CECR2Q9BXF3 1484 aa23.79■■□□□ 1.4
SPG7-211ENST00000565370 SMARCA4P51532 1647 aa23.47■■□□□ 1.35
SPG7-211ENST00000565370 BAZ1AQ9NRL2 1556 aaPredicted RBP23.44■■□□□ 1.34
SPG7-211ENST00000565370 SMARCA2P51531 1590 aa23.37■■□□□ 1.33
SPG7-211ENST00000565370 DNAJC5Q9H3Z4 198 aa23.35■■□□□ 1.33
SPG7-211ENST00000565370 NCAPD3P42695 1498 aa23.33■■□□□ 1.33
SPG7-211ENST00000565370 ATAD2BQ9ULI0 1458 aa23.31■■□□□ 1.32
SPG7-211ENST00000565370 HMGXB3Q12766 1538 aa23.29■■□□□ 1.32
SPG7-211ENST00000565370 PEG3Q9GZU2 1588 aa23.23■■□□□ 1.31
SPG7-211ENST00000565370 MROH2BQ7Z745 1585 aa23.19■■□□□ 1.3
SPG7-211ENST00000565370 BAZ1BQ9UIG0 1483 aaKnown RBP23.18■■□□□ 1.3
SPG7-211ENST00000565370 WIZO95785 1651 aa22.96■■□□□ 1.27
SPG7-211ENST00000565370 ERCC6Q03468 1493 aa22.88■■□□□ 1.25
SPG7-211ENST00000565370 RSF1Q96T23 1441 aaPredicted RBP22.85■■□□□ 1.25
SPG7-211ENST00000565370 CUX2O14529 1486 aa22.83■■□□□ 1.25
SPG7-211ENST00000565370 LAMC3Q9Y6N6 1575 aa22.83■■□□□ 1.25
SPG7-211ENST00000565370 NESP48681 1621 aa22.79■■□□□ 1.24
SPG7-211ENST00000565370 TOP2AP11388 1531 aaKnown RBP22.77■■□□□ 1.24
SPG7-211ENST00000565370 PDS5BQ9NTI5 1447 aa22.65■■□□□ 1.22
SPG7-211ENST00000565370 CADPSQ9ULU8 1353 aa22.63■■□□□ 1.21
SPG7-211ENST00000565370 KIF21AQ7Z4S6 1674 aa22.62■■□□□ 1.21
SPG7-211ENST00000565370 THOC2Q8NI27 1593 aaKnown RBP22.59■■□□□ 1.21
SPG7-211ENST00000565370 CFTRP13569 1480 aa22.48■■□□□ 1.19
SPG7-211ENST00000565370 CEP164Q9UPV0 1460 aa22.45■■□□□ 1.18
SPG7-211ENST00000565370 PRDM2Q13029 1718 aa22.44■■□□□ 1.18
SPG7-211ENST00000565370 MRC2Q9UBG0 1479 aa22.44■■□□□ 1.18
SPG7-211ENST00000565370 FANCD2Q9BXW9 1451 aa22.41■■□□□ 1.18
SPG7-211ENST00000565370 CCDC88BA6NC98 1476 aa22.4■■□□□ 1.18
SPG7-211ENST00000565370 WDR62O43379 1518 aa22.37■■□□□ 1.17
SPG7-211ENST00000565370 URB2Q14146 1524 aaKnown RBP22.17■■□□□ 1.14
SPG7-211ENST00000565370 TRIM41Q8WV44 630 aa22.17■■□□□ 1.14
SPG7-211ENST00000565370 SUPT5HO00267 1087 aaKnown RBP22.1■■□□□ 1.13
SPG7-211ENST00000565370 ABCC8Q09428 1581 aa22.07■■□□□ 1.12
SPG7-211ENST00000565370 DNMBPQ6XZF7 1577 aa22.04■■□□□ 1.12
SPG7-211ENST00000565370 TOPBP1Q92547 1522 aa22.03■■□□□ 1.12
SPG7-211ENST00000565370 IFT140Q96RY7 1462 aa21.96■■□□□ 1.11
SPG7-211ENST00000565370 POLA1P09884 1462 aaPredicted RBP21.83■■□□□ 1.09
SPG7-211ENST00000565370 EIF4G3O43432 1585 aaKnown RBP21.82■■□□□ 1.08
SPG7-211ENST00000565370 TARBP1Q13395 1621 aaKnown RBP21.81■■□□□ 1.08
SPG7-211ENST00000565370 ZNF608Q9ULD9 1512 aaPredicted RBP21.8■■□□□ 1.08
SPG7-211ENST00000565370 CUX1P39880 1505 aa21.79■■□□□ 1.08
SPG7-211ENST00000565370 FGD5Q6ZNL6 1462 aa21.77■■□□□ 1.07
SPG7-211ENST00000565370 WDR97A6NE52 1622 aa21.74■■□□□ 1.07
SPG7-211ENST00000565370 OSCARQ8IYS5 282 aa21.74■■□□□ 1.07
SPG7-211ENST00000565370 SOGA1O94964 1423 aa21.71■■□□□ 1.07
SPG7-211ENST00000565370 RAD54L2Q9Y4B4 1467 aa21.69■■□□□ 1.06
SPG7-211ENST00000565370 AQRO60306 1485 aaKnown RBP eCLIP21.64■■□□□ 1.065e-9■■■■□ 25.5
SPG7-211ENST00000565370 BIVM-ERCC5R4GMW8 1640 aa21.62■■□□□ 1.05
SPG7-211ENST00000565370 TOP2BQ02880 1626 aa21.61■■□□□ 1.05
SPG7-211ENST00000565370 WRNQ14191 1432 aaPredicted RBP eCLIP21.61■■□□□ 1.05
SPG7-211ENST00000565370 TDRD9Q8NDG6 1382 aaKnown RBP21.57■■□□□ 1.04
SPG7-211ENST00000565370 CHD1O14646 1710 aa21.57■■□□□ 1.04
SPG7-211ENST00000565370 SYNJ1O43426 1573 aa21.56■■□□□ 1.04
SPG7-211ENST00000565370 RIMBP3CA6NJZ7 1639 aa21.55■■□□□ 1.04
SPG7-211ENST00000565370 RIMBP3BA6NNM3 1639 aa21.55■■□□□ 1.04
SPG7-211ENST00000565370 RIMBP3Q9UFD9 1639 aa21.55■■□□□ 1.04
SPG7-211ENST00000565370 ABCA10Q8WWZ4 1543 aa21.55■■□□□ 1.04
SPG7-211ENST00000565370 PBRM1Q86U86 1689 aa21.54■■□□□ 1.04
SPG7-211ENST00000565370 GRIN2BQ13224 1484 aa21.53■■□□□ 1.04
SPG7-211ENST00000565370 SNAPC4Q5SXM2 1469 aa21.52■■□□□ 1.04
SPG7-211ENST00000565370 MAGI1Q96QZ7 1491 aaPredicted RBP21.52■■□□□ 1.03
SPG7-211ENST00000565370 ABCA5Q8WWZ7 1642 aa21.51■■□□□ 1.03
SPG7-211ENST00000565370 GAPVD1Q14C86 1478 aa21.49■■□□□ 1.03
SPG7-211ENST00000565370 FBLN2P98095 1184 aa21.43■■□□□ 1.02
SPG7-211ENST00000565370 ARHGEF11O15085 1522 aa21.41■■□□□ 1.02
SPG7-211ENST00000565370 SYNJ2O15056 1496 aa21.41■■□□□ 1.02
SPG7-211ENST00000565370 CHMP7Q8WUX9 453 aaPredicted RBP21.36■■□□□ 1.01
SPG7-211ENST00000565370 ADAMTS12P58397 1594 aa21.35■■□□□ 1.01
SPG7-211ENST00000565370 ERICH3Q5RHP9 1530 aa21.32■■□□□ 1
SPG7-211ENST00000565370 CLASP1Q7Z460 1538 aa21.3■■□□□ 1
SPG7-211ENST00000565370 CYB5RLQ6IPT4 315 aa21.3■■□□□ 1
SPG7-211ENST00000565370 GRIN2AQ12879 1464 aa21.26■□□□□ 0.99
SPG7-211ENST00000565370 FHAD1B1AJZ9 1412 aa21.24■□□□□ 0.99
SPG7-211ENST00000565370 ARAP1Q96P48 1450 aa21.2■□□□□ 0.98
SPG7-211ENST00000565370 KIF27Q86VH2 1401 aa21.19■□□□□ 0.98
SPG7-211ENST00000565370 TRHP20396 242 aaPredicted RBP21.18■□□□□ 0.98
SPG7-211ENST00000565370 CEP170Q5SW79 1584 aa21.15■□□□□ 0.98
SPG7-211ENST00000565370 CUL7Q14999 1698 aa21.15■□□□□ 0.98
SPG7-211ENST00000565370 NUP160Q12769 1436 aa21.14■□□□□ 0.98
SPG7-211ENST00000565370 SHROOM2Q13796 1616 aa21.04■□□□□ 0.96
SPG7-211ENST00000565370 RUSC2Q8N2Y8 1516 aa21.04■□□□□ 0.96
SPG7-211ENST00000565370 IGF1RP08069 1367 aa21■□□□□ 0.95
SPG7-211ENST00000565370 CARMIL1Q5VZK9 1371 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms