RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 NISCHQ9Y2I1 1504 aa20.84■□□□□ 0.93
UBR1-204ENST00000563239 CCDC180Q9P1Z9 1646 aa18.48■□□□□ 0.55
UBR1-204ENST00000563239 ABCC9O60706 1549 aa18.08■□□□□ 0.48
UBR1-204ENST00000563239 NACADO15069 1562 aa17.37■□□□□ 0.37
UBR1-204ENST00000563239 RB1CC1Q8TDY2 1594 aa17.37■□□□□ 0.37
UBR1-204ENST00000563239 ZCCHC6Q5VYS8 1495 aaKnown RBP17.37■□□□□ 0.37
UBR1-204ENST00000563239 DCAF8L2P0C7V8 631 aa17.35■□□□□ 0.37
UBR1-204ENST00000563239 MYO15BQ96JP2 1530 aa17.3■□□□□ 0.36
UBR1-204ENST00000563239 DCAF1Q9Y4B6 1507 aa17.24■□□□□ 0.35
UBR1-204ENST00000563239 UNC13AQ9UPW8 1703 aa17.01■□□□□ 0.31
UBR1-204ENST00000563239 PABPN1Q86U42 306 aaKnown RBP eCLIP16.92■□□□□ 0.3
UBR1-204ENST00000563239 BICRAQ9NZM4 1560 aa16.92■□□□□ 0.3
UBR1-204ENST00000563239 SCRIBQ14160 1630 aa16.88■□□□□ 0.29
UBR1-204ENST00000563239 DNAJC5BQ9UF47 199 aa16.86■□□□□ 0.29
UBR1-204ENST00000563239 SHROOM4Q9ULL8 1493 aa16.67■□□□□ 0.26
UBR1-204ENST00000563239 EIF4G1Q04637 1599 aaKnown RBP16.43■□□□□ 0.22
UBR1-204ENST00000563239 DNAJC5Q9H3Z4 198 aa16.42■□□□□ 0.22
UBR1-204ENST00000563239 CC2D2AQ9P2K1 1620 aa16.35■□□□□ 0.21
UBR1-204ENST00000563239 AEBP2Q6ZN18 517 aaPredicted RBP16.28■□□□□ 0.2
UBR1-204ENST00000563239 CECR2Q9BXF3 1484 aa16.27■□□□□ 0.19
UBR1-204ENST00000563239 CHIC1Q5VXU3 224 aa16.18■□□□□ 0.18
UBR1-204ENST00000563239 SMARCA4P51532 1647 aa16.16■□□□□ 0.18
UBR1-204ENST00000563239 BAZ1AQ9NRL2 1556 aaPredicted RBP16.12■□□□□ 0.17
UBR1-204ENST00000563239 ATAD2BQ9ULI0 1458 aa16.08■□□□□ 0.16
UBR1-204ENST00000563239 MROH2BQ7Z745 1585 aa16.08■□□□□ 0.16
UBR1-204ENST00000563239 NCAPD3P42695 1498 aa16.06■□□□□ 0.16
UBR1-204ENST00000563239 SMARCA2P51531 1590 aa16.01■□□□□ 0.15
UBR1-204ENST00000563239 PEG3Q9GZU2 1588 aa16.01■□□□□ 0.15
UBR1-204ENST00000563239 HMGXB3Q12766 1538 aa15.96■□□□□ 0.15
UBR1-204ENST00000563239 RSF1Q96T23 1441 aaPredicted RBP15.91■□□□□ 0.14
UBR1-204ENST00000563239 BAZ1BQ9UIG0 1483 aaKnown RBP15.91■□□□□ 0.14
UBR1-204ENST00000563239 WIZO95785 1651 aa15.89■□□□□ 0.13
UBR1-204ENST00000563239 TOP2AP11388 1531 aaKnown RBP15.71■□□□□ 0.11
UBR1-204ENST00000563239 NESP48681 1621 aa15.68■□□□□ 0.1
UBR1-204ENST00000563239 LAMC3Q9Y6N6 1575 aa15.59■□□□□ 0.09
UBR1-204ENST00000563239 CADPSQ9ULU8 1353 aa15.59■□□□□ 0.09
UBR1-204ENST00000563239 CCDC88BA6NC98 1476 aa15.55■□□□□ 0.08
UBR1-204ENST00000563239 ERCC6Q03468 1493 aa15.53■□□□□ 0.08
UBR1-204ENST00000563239 CFTRP13569 1480 aa15.51■□□□□ 0.07
UBR1-204ENST00000563239 PDS5BQ9NTI5 1447 aa15.49■□□□□ 0.07
UBR1-204ENST00000563239 SUPT5HO00267 1087 aaKnown RBP15.48■□□□□ 0.07
UBR1-204ENST00000563239 KIF21AQ7Z4S6 1674 aa15.46■□□□□ 0.07
UBR1-204ENST00000563239 THOC2Q8NI27 1593 aaKnown RBP15.42■□□□□ 0.06
UBR1-204ENST00000563239 FANCD2Q9BXW9 1451 aa15.4■□□□□ 0.06
UBR1-204ENST00000563239 CUX2O14529 1486 aa15.39■□□□□ 0.05
UBR1-204ENST00000563239 CEP164Q9UPV0 1460 aa15.35■□□□□ 0.05
UBR1-204ENST00000563239 MRC2Q9UBG0 1479 aa15.33■□□□□ 0.05
UBR1-204ENST00000563239 PRDM2Q13029 1718 aa15.33■□□□□ 0.04
UBR1-204ENST00000563239 WDR62O43379 1518 aa15.3■□□□□ 0.04
UBR1-204ENST00000563239 URB2Q14146 1524 aaKnown RBP15.27■□□□□ 0.04
UBR1-204ENST00000563239 TRIM41Q8WV44 630 aa15.18■□□□□ 0.02
UBR1-204ENST00000563239 TOPBP1Q92547 1522 aa15.17■□□□□ 0.02
UBR1-204ENST00000563239 DNMBPQ6XZF7 1577 aa15.13■□□□□ 0.01
UBR1-204ENST00000563239 ABCC8Q09428 1581 aa15.12■□□□□ 0.01
UBR1-204ENST00000563239 CUX1P39880 1505 aa15.08■□□□□ 0.01
UBR1-204ENST00000563239 POLA1P09884 1462 aaPredicted RBP15.04■□□□□ -0
UBR1-204ENST00000563239 IFT140Q96RY7 1462 aa15.04■□□□□ -0
UBR1-204ENST00000563239 ZNF608Q9ULD9 1512 aaPredicted RBP15.02□□□□□ -0.01
UBR1-204ENST00000563239 TARBP1Q13395 1621 aaKnown RBP15.01□□□□□ -0.01
UBR1-204ENST00000563239 FGD5Q6ZNL6 1462 aa15□□□□□ -0.01
UBR1-204ENST00000563239 RAD54L2Q9Y4B4 1467 aa14.99□□□□□ -0.01
UBR1-204ENST00000563239 SOGA1O94964 1423 aa14.97□□□□□ -0.01
UBR1-204ENST00000563239 WRNQ14191 1432 aaPredicted RBP eCLIP14.96□□□□□ -0.01
UBR1-204ENST00000563239 SYNJ1O43426 1573 aa14.95□□□□□ -0.02
UBR1-204ENST00000563239 TOP2BQ02880 1626 aa14.93□□□□□ -0.02
UBR1-204ENST00000563239 BIVM-ERCC5R4GMW8 1640 aa14.93□□□□□ -0.02
UBR1-204ENST00000563239 AQRO60306 1485 aaKnown RBP eCLIP14.92□□□□□ -0.021e-6■■■■■ 34.6
UBR1-204ENST00000563239 EIF4G3O43432 1585 aaKnown RBP14.92□□□□□ -0.02
UBR1-204ENST00000563239 TDRD9Q8NDG6 1382 aaKnown RBP14.89□□□□□ -0.03
UBR1-204ENST00000563239 WDR97A6NE52 1622 aa14.88□□□□□ -0.03
UBR1-204ENST00000563239 ABCA10Q8WWZ4 1543 aa14.86□□□□□ -0.03
UBR1-204ENST00000563239 ABCA5Q8WWZ7 1642 aa14.8□□□□□ -0.04
UBR1-204ENST00000563239 GAPVD1Q14C86 1478 aa14.79□□□□□ -0.04
UBR1-204ENST00000563239 GRIN2BQ13224 1484 aa14.78□□□□□ -0.04
UBR1-204ENST00000563239 SNAPC4Q5SXM2 1469 aa14.76□□□□□ -0.05
UBR1-204ENST00000563239 OSCARQ8IYS5 282 aa14.75□□□□□ -0.05
UBR1-204ENST00000563239 PBRM1Q86U86 1689 aa14.74□□□□□ -0.05
UBR1-204ENST00000563239 MAGI1Q96QZ7 1491 aaPredicted RBP14.73□□□□□ -0.05
UBR1-204ENST00000563239 CHD1O14646 1710 aa14.72□□□□□ -0.05
UBR1-204ENST00000563239 FBLN2P98095 1184 aa14.68□□□□□ -0.06
UBR1-204ENST00000563239 SYNJ2O15056 1496 aa14.68□□□□□ -0.06
UBR1-204ENST00000563239 ERICH3Q5RHP9 1530 aa14.66□□□□□ -0.06
UBR1-204ENST00000563239 CHMP7Q8WUX9 453 aaPredicted RBP14.65□□□□□ -0.06
UBR1-204ENST00000563239 ADAMTS12P58397 1594 aa14.64□□□□□ -0.07
UBR1-204ENST00000563239 KIF27Q86VH2 1401 aa14.63□□□□□ -0.07
UBR1-204ENST00000563239 IGF1RP08069 1367 aa14.62□□□□□ -0.07
UBR1-204ENST00000563239 FHAD1B1AJZ9 1412 aa14.62□□□□□ -0.07
UBR1-204ENST00000563239 GRIN2AQ12879 1464 aa14.6□□□□□ -0.07
UBR1-204ENST00000563239 CLASP1Q7Z460 1538 aa14.59□□□□□ -0.07
UBR1-204ENST00000563239 RUSC2Q8N2Y8 1516 aa14.58□□□□□ -0.08
UBR1-204ENST00000563239 NUP160Q12769 1436 aa14.55□□□□□ -0.08
UBR1-204ENST00000563239 CEP170Q5SW79 1584 aa14.54□□□□□ -0.08
UBR1-204ENST00000563239 RIMBP3CA6NJZ7 1639 aa14.53□□□□□ -0.08
UBR1-204ENST00000563239 RIMBP3BA6NNM3 1639 aa14.53□□□□□ -0.08
UBR1-204ENST00000563239 RIMBP3Q9UFD9 1639 aa14.53□□□□□ -0.08
UBR1-204ENST00000563239 ARHGEF11O15085 1522 aa14.53□□□□□ -0.08
UBR1-204ENST00000563239 CUL7Q14999 1698 aa14.52□□□□□ -0.09
UBR1-204ENST00000563239 CARMIL1Q5VZK9 1371 aa14.5□□□□□ -0.09
UBR1-204ENST00000563239 SHROOM2Q13796 1616 aa14.43□□□□□ -0.1
UBR1-204ENST00000563239 ARAP1Q96P48 1450 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms