RNA–Protein interactions for RNA: ENST00000562775.1

SPG7-206, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 1 (best)

Gene SPG7, Length 1,595 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-206ENST00000562775 NISCHQ9Y2I1 1504 aa32.26■■■□□ 2.76
SPG7-206ENST00000562775 CCDC180Q9P1Z9 1646 aa28.24■■■□□ 2.11
SPG7-206ENST00000562775 ZCCHC6Q5VYS8 1495 aaKnown RBP27.06■■□□□ 1.92
SPG7-206ENST00000562775 ABCC9O60706 1549 aa26.82■■□□□ 1.88
SPG7-206ENST00000562775 DCAF1Q9Y4B6 1507 aa26.72■■□□□ 1.87
SPG7-206ENST00000562775 DCAF8L2P0C7V8 631 aa26.66■■□□□ 1.86
SPG7-206ENST00000562775 MYO15BQ96JP2 1530 aa26.48■■□□□ 1.83
SPG7-206ENST00000562775 NACADO15069 1562 aa26.35■■□□□ 1.81
SPG7-206ENST00000562775 RB1CC1Q8TDY2 1594 aa26.16■■□□□ 1.78
SPG7-206ENST00000562775 SHROOM4Q9ULL8 1493 aa26.11■■□□□ 1.77
SPG7-206ENST00000562775 SCRIBQ14160 1630 aa25.88■■□□□ 1.73
SPG7-206ENST00000562775 UNC13AQ9UPW8 1703 aa25.58■■□□□ 1.69
SPG7-206ENST00000562775 BICRAQ9NZM4 1560 aa25.35■■□□□ 1.65
SPG7-206ENST00000562775 PABPN1Q86U42 306 aaKnown RBP eCLIP25.23■■□□□ 1.63
SPG7-206ENST00000562775 CECR2Q9BXF3 1484 aa25.05■■□□□ 1.6
SPG7-206ENST00000562775 SUPT5HO00267 1087 aaKnown RBP25.05■■□□□ 1.6
SPG7-206ENST00000562775 RSF1Q96T23 1441 aaPredicted RBP24.95■■□□□ 1.58
SPG7-206ENST00000562775 BAZ1AQ9NRL2 1556 aaPredicted RBP24.94■■□□□ 1.58
SPG7-206ENST00000562775 MROH2BQ7Z745 1585 aa24.9■■□□□ 1.58
SPG7-206ENST00000562775 SMARCA4P51532 1647 aa24.83■■□□□ 1.57
SPG7-206ENST00000562775 WIZO95785 1651 aa24.67■■□□□ 1.54
SPG7-206ENST00000562775 EIF4G1Q04637 1599 aaKnown RBP24.61■■□□□ 1.53
SPG7-206ENST00000562775 PEG3Q9GZU2 1588 aa24.56■■□□□ 1.52
SPG7-206ENST00000562775 ATAD2BQ9ULI0 1458 aa24.48■■□□□ 1.51
SPG7-206ENST00000562775 SMARCA2P51531 1590 aa24.48■■□□□ 1.51
SPG7-206ENST00000562775 TOP2AP11388 1531 aaKnown RBP24.44■■□□□ 1.5
SPG7-206ENST00000562775 NCAPD3P42695 1498 aa24.32■■□□□ 1.48
SPG7-206ENST00000562775 BAZ1BQ9UIG0 1483 aaKnown RBP24.32■■□□□ 1.48
SPG7-206ENST00000562775 CC2D2AQ9P2K1 1620 aa24.28■■□□□ 1.48
SPG7-206ENST00000562775 HMGXB3Q12766 1538 aa24.27■■□□□ 1.48
SPG7-206ENST00000562775 CCDC88BA6NC98 1476 aa24.18■■□□□ 1.46
SPG7-206ENST00000562775 CHIC1Q5VXU3 224 aa23.91■■□□□ 1.42
SPG7-206ENST00000562775 DNAJC5BQ9UF47 199 aa23.8■■□□□ 1.4
SPG7-206ENST00000562775 CFTRP13569 1480 aa23.71■■□□□ 1.39
SPG7-206ENST00000562775 CADPSQ9ULU8 1353 aa23.68■■□□□ 1.38
SPG7-206ENST00000562775 TRIM41Q8WV44 630 aa23.61■■□□□ 1.37
SPG7-206ENST00000562775 PRDM2Q13029 1718 aa23.58■■□□□ 1.37
SPG7-206ENST00000562775 ABCC8Q09428 1581 aa23.58■■□□□ 1.37
SPG7-206ENST00000562775 LAMC3Q9Y6N6 1575 aa23.52■■□□□ 1.36
SPG7-206ENST00000562775 WRNQ14191 1432 aaPredicted RBP eCLIP23.5■■□□□ 1.35
SPG7-206ENST00000562775 NESP48681 1621 aa23.48■■□□□ 1.35
SPG7-206ENST00000562775 FANCD2Q9BXW9 1451 aa23.39■■□□□ 1.34
SPG7-206ENST00000562775 SYNJ1O43426 1573 aa23.38■■□□□ 1.33
SPG7-206ENST00000562775 PDS5BQ9NTI5 1447 aa23.34■■□□□ 1.33
SPG7-206ENST00000562775 TOP2BQ02880 1626 aa23.32■■□□□ 1.32
SPG7-206ENST00000562775 BIVM-ERCC5R4GMW8 1640 aa23.31■■□□□ 1.32
SPG7-206ENST00000562775 CUX1P39880 1505 aa23.29■■□□□ 1.32
SPG7-206ENST00000562775 CEP164Q9UPV0 1460 aa23.27■■□□□ 1.32
SPG7-206ENST00000562775 KIF21AQ7Z4S6 1674 aa23.2■■□□□ 1.3
SPG7-206ENST00000562775 DNMBPQ6XZF7 1577 aa23.16■■□□□ 1.3
SPG7-206ENST00000562775 TOPBP1Q92547 1522 aa23.13■■□□□ 1.29
SPG7-206ENST00000562775 FAM9AQ8IZU1 332 aaPredicted RBP23.12■■□□□ 1.29
SPG7-206ENST00000562775 SOGA1O94964 1423 aa23.11■■□□□ 1.29
SPG7-206ENST00000562775 URB2Q14146 1524 aaKnown RBP23.1■■□□□ 1.29
SPG7-206ENST00000562775 EEA1Q15075 1411 aa23.1■■□□□ 1.29
SPG7-206ENST00000562775 FGD5Q6ZNL6 1462 aa23.07■■□□□ 1.28
SPG7-206ENST00000562775 MRC2Q9UBG0 1479 aa23.04■■□□□ 1.28
SPG7-206ENST00000562775 RUSC2Q8N2Y8 1516 aa23.03■■□□□ 1.28
SPG7-206ENST00000562775 ERCC6Q03468 1493 aa23.02■■□□□ 1.28
SPG7-206ENST00000562775 POLA1P09884 1462 aaPredicted RBP22.99■■□□□ 1.27
SPG7-206ENST00000562775 CSRNP3Q8WYN3 585 aa22.96■■□□□ 1.27
SPG7-206ENST00000562775 LOC105371045A0A1W2PR82 267 aa22.95■■□□□ 1.26
SPG7-206ENST00000562775 KIF27Q86VH2 1401 aa22.93■■□□□ 1.26
SPG7-206ENST00000562775 WDR62O43379 1518 aa22.92■■□□□ 1.26
SPG7-206ENST00000562775 RAD54L2Q9Y4B4 1467 aa22.9■■□□□ 1.26
SPG7-206ENST00000562775 THOC2Q8NI27 1593 aaKnown RBP22.88■■□□□ 1.25
SPG7-206ENST00000562775 ABCA10Q8WWZ4 1543 aa22.88■■□□□ 1.25
SPG7-206ENST00000562775 CUX2O14529 1486 aa22.88■■□□□ 1.25
SPG7-206ENST00000562775 WDR97A6NE52 1622 aa22.81■■□□□ 1.24
SPG7-206ENST00000562775 TARBP1Q13395 1621 aaKnown RBP22.8■■□□□ 1.24
SPG7-206ENST00000562775 KIF21BO75037 1637 aa22.78■■□□□ 1.24
SPG7-206ENST00000562775 EHMT2Q96KQ7 1210 aa22.76■■□□□ 1.23
SPG7-206ENST00000562775 IFT140Q96RY7 1462 aa22.74■■□□□ 1.23
SPG7-206ENST00000562775 GOLGA3Q08378 1498 aa22.74■■□□□ 1.23
SPG7-206ENST00000562775 IGF1RP08069 1367 aa22.73■■□□□ 1.23
SPG7-206ENST00000562775 PRXQ9BXM0 1461 aa22.72■■□□□ 1.23
SPG7-206ENST00000562775 ABCA5Q8WWZ7 1642 aa22.7■■□□□ 1.22
SPG7-206ENST00000562775 TDRD9Q8NDG6 1382 aaKnown RBP22.69■■□□□ 1.22
SPG7-206ENST00000562775 ERICH3Q5RHP9 1530 aa22.67■■□□□ 1.22
SPG7-206ENST00000562775 GAPVD1Q14C86 1478 aa22.67■■□□□ 1.22
SPG7-206ENST00000562775 RAPGEF2Q9Y4G8 1499 aa22.65■■□□□ 1.22
SPG7-206ENST00000562775 TNIKQ9UKE5 1360 aa22.64■■□□□ 1.21
SPG7-206ENST00000562775 UBTFP17480 764 aaKnown RBP22.63■■□□□ 1.21
SPG7-206ENST00000562775 CARMIL1Q5VZK9 1371 aa22.62■■□□□ 1.21
SPG7-206ENST00000562775 CUL7Q14999 1698 aa22.58■■□□□ 1.21
SPG7-206ENST00000562775 AQRO60306 1485 aaKnown RBP eCLIP22.58■■□□□ 1.212e-6■□□□□ 8.5
SPG7-206ENST00000562775 ZNF608Q9ULD9 1512 aaPredicted RBP22.58■■□□□ 1.2
SPG7-206ENST00000562775 PBRM1Q86U86 1689 aa22.54■■□□□ 1.2
SPG7-206ENST00000562775 GRIN2BQ13224 1484 aa22.53■■□□□ 1.2
SPG7-206ENST00000562775 EIF4G3O43432 1585 aaKnown RBP22.51■■□□□ 1.19
SPG7-206ENST00000562775 CEP162Q5TB80 1403 aa22.47■■□□□ 1.19
SPG7-206ENST00000562775 FHAD1B1AJZ9 1412 aa22.43■■□□□ 1.18
SPG7-206ENST00000562775 ADAMTS12P58397 1594 aa22.42■■□□□ 1.18
SPG7-206ENST00000562775 SNAPC4Q5SXM2 1469 aa22.37■■□□□ 1.17
SPG7-206ENST00000562775 MAGI1Q96QZ7 1491 aaPredicted RBP22.36■■□□□ 1.17
SPG7-206ENST00000562775 CLIP1P30622 1438 aa22.36■■□□□ 1.17
SPG7-206ENST00000562775 CTTNBP2Q8WZ74 1663 aa22.29■■□□□ 1.16
SPG7-206ENST00000562775 SYNJ2O15056 1496 aa22.27■■□□□ 1.16
SPG7-206ENST00000562775 RANGAP1P46060 587 aaPredicted RBP22.25■■□□□ 1.15
SPG7-206ENST00000562775 GRIN2AQ12879 1464 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms