RNA–Protein interactions for RNA: ENST00000562310.1

COMMD4-205, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 568 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-205ENST00000562310 NISCHQ9Y2I1 1504 aa32.87■■■□□ 2.85
COMMD4-205ENST00000562310 CCDC180Q9P1Z9 1646 aa28.92■■■□□ 2.22
COMMD4-205ENST00000562310 ZCCHC6Q5VYS8 1495 aaKnown RBP27.61■■■□□ 2.01
COMMD4-205ENST00000562310 DCAF1Q9Y4B6 1507 aa27.3■■□□□ 1.96
COMMD4-205ENST00000562310 ABCC9O60706 1549 aa27.23■■□□□ 1.95
COMMD4-205ENST00000562310 MYO15BQ96JP2 1530 aa27.06■■□□□ 1.92
COMMD4-205ENST00000562310 DCAF8L2P0C7V8 631 aa26.93■■□□□ 1.9
COMMD4-205ENST00000562310 NACADO15069 1562 aa26.9■■□□□ 1.9
COMMD4-205ENST00000562310 RB1CC1Q8TDY2 1594 aa26.71■■□□□ 1.87
COMMD4-205ENST00000562310 SHROOM4Q9ULL8 1493 aa26.46■■□□□ 1.83
COMMD4-205ENST00000562310 SCRIBQ14160 1630 aa26.39■■□□□ 1.81
COMMD4-205ENST00000562310 UNC13AQ9UPW8 1703 aa26.14■■□□□ 1.77
COMMD4-205ENST00000562310 BICRAQ9NZM4 1560 aa25.82■■□□□ 1.72
COMMD4-205ENST00000562310 PABPN1Q86U42 306 aaKnown RBP eCLIP25.52■■□□□ 1.68
COMMD4-205ENST00000562310 BAZ1AQ9NRL2 1556 aaPredicted RBP25.45■■□□□ 1.66
COMMD4-205ENST00000562310 CECR2Q9BXF3 1484 aa25.44■■□□□ 1.66
COMMD4-205ENST00000562310 DNAJC5BQ9UF47 199 aa25.41■■□□□ 1.66
COMMD4-205ENST00000562310 SUPT5HO00267 1087 aaKnown RBP25.37■■□□□ 1.65
COMMD4-205ENST00000562310 RSF1Q96T23 1441 aaPredicted RBP25.37■■□□□ 1.65
COMMD4-205ENST00000562310 SMARCA4P51532 1647 aa25.34■■□□□ 1.65
COMMD4-205ENST00000562310 MROH2BQ7Z745 1585 aa25.33■■□□□ 1.65
COMMD4-205ENST00000562310 WIZO95785 1651 aa25.13■■□□□ 1.61
COMMD4-205ENST00000562310 PEG3Q9GZU2 1588 aa25.1■■□□□ 1.61
COMMD4-205ENST00000562310 EIF4G1Q04637 1599 aaKnown RBP25.07■■□□□ 1.6
COMMD4-205ENST00000562310 SMARCA2P51531 1590 aa24.99■■□□□ 1.59
COMMD4-205ENST00000562310 TOP2AP11388 1531 aaKnown RBP24.96■■□□□ 1.59
COMMD4-205ENST00000562310 ATAD2BQ9ULI0 1458 aa24.9■■□□□ 1.58
COMMD4-205ENST00000562310 BAZ1BQ9UIG0 1483 aaKnown RBP24.79■■□□□ 1.56
COMMD4-205ENST00000562310 HMGXB3Q12766 1538 aa24.79■■□□□ 1.56
COMMD4-205ENST00000562310 NCAPD3P42695 1498 aa24.75■■□□□ 1.55
COMMD4-205ENST00000562310 CC2D2AQ9P2K1 1620 aa24.73■■□□□ 1.55
COMMD4-205ENST00000562310 CCDC88BA6NC98 1476 aa24.58■■□□□ 1.53
COMMD4-205ENST00000562310 CHIC1Q5VXU3 224 aa24.25■■□□□ 1.47
COMMD4-205ENST00000562310 PRDM2Q13029 1718 aa24.2■■□□□ 1.46
COMMD4-205ENST00000562310 CFTRP13569 1480 aa24.14■■□□□ 1.46
COMMD4-205ENST00000562310 CADPSQ9ULU8 1353 aa24.06■■□□□ 1.44
COMMD4-205ENST00000562310 LAMC3Q9Y6N6 1575 aa24.01■■□□□ 1.43
COMMD4-205ENST00000562310 ABCC8Q09428 1581 aa23.99■■□□□ 1.43
COMMD4-205ENST00000562310 TRIM41Q8WV44 630 aa23.94■■□□□ 1.42
COMMD4-205ENST00000562310 WRNQ14191 1432 aaPredicted RBP eCLIP23.92■■□□□ 1.42
COMMD4-205ENST00000562310 DNAJC5Q9H3Z4 198 aa23.85■■□□□ 1.41
COMMD4-205ENST00000562310 SYNJ1O43426 1573 aa23.83■■□□□ 1.41
COMMD4-205ENST00000562310 NESP48681 1621 aa23.83■■□□□ 1.41
COMMD4-205ENST00000562310 BIVM-ERCC5R4GMW8 1640 aa23.83■■□□□ 1.41
COMMD4-205ENST00000562310 FANCD2Q9BXW9 1451 aa23.81■■□□□ 1.4
COMMD4-205ENST00000562310 TOP2BQ02880 1626 aa23.81■■□□□ 1.4
COMMD4-205ENST00000562310 PDS5BQ9NTI5 1447 aa23.76■■□□□ 1.39
COMMD4-205ENST00000562310 CEP164Q9UPV0 1460 aa23.73■■□□□ 1.39
COMMD4-205ENST00000562310 CUX1P39880 1505 aa23.72■■□□□ 1.39
COMMD4-205ENST00000562310 KIF21AQ7Z4S6 1674 aa23.68■■□□□ 1.38
COMMD4-205ENST00000562310 DNMBPQ6XZF7 1577 aa23.65■■□□□ 1.38
COMMD4-205ENST00000562310 EEA1Q15075 1411 aa23.59■■□□□ 1.37
COMMD4-205ENST00000562310 TOPBP1Q92547 1522 aa23.55■■□□□ 1.36
COMMD4-205ENST00000562310 URB2Q14146 1524 aaKnown RBP23.51■■□□□ 1.35
COMMD4-205ENST00000562310 FGD5Q6ZNL6 1462 aa23.49■■□□□ 1.35
COMMD4-205ENST00000562310 MRC2Q9UBG0 1479 aa23.49■■□□□ 1.35
COMMD4-205ENST00000562310 SOGA1O94964 1423 aa23.46■■□□□ 1.35
COMMD4-205ENST00000562310 ERCC6Q03468 1493 aa23.43■■□□□ 1.34
COMMD4-205ENST00000562310 POLA1P09884 1462 aaPredicted RBP23.41■■□□□ 1.34
COMMD4-205ENST00000562310 WDR62O43379 1518 aa23.39■■□□□ 1.34
COMMD4-205ENST00000562310 FAM9AQ8IZU1 332 aaPredicted RBP23.38■■□□□ 1.33
COMMD4-205ENST00000562310 THOC2Q8NI27 1593 aaKnown RBP23.36■■□□□ 1.33
COMMD4-205ENST00000562310 KIF27Q86VH2 1401 aa23.35■■□□□ 1.33
COMMD4-205ENST00000562310 RUSC2Q8N2Y8 1516 aa23.35■■□□□ 1.33
COMMD4-205ENST00000562310 WDR97A6NE52 1622 aa23.34■■□□□ 1.33
COMMD4-205ENST00000562310 ABCA10Q8WWZ4 1543 aa23.33■■□□□ 1.32
COMMD4-205ENST00000562310 CUX2O14529 1486 aa23.3■■□□□ 1.32
COMMD4-205ENST00000562310 CSRNP3Q8WYN3 585 aa23.29■■□□□ 1.32
COMMD4-205ENST00000562310 KIF21BO75037 1637 aa23.29■■□□□ 1.32
COMMD4-205ENST00000562310 RAD54L2Q9Y4B4 1467 aa23.24■■□□□ 1.31
COMMD4-205ENST00000562310 TARBP1Q13395 1621 aaKnown RBP23.24■■□□□ 1.31
COMMD4-205ENST00000562310 GOLGA3Q08378 1498 aa23.2■■□□□ 1.3
COMMD4-205ENST00000562310 ABCA5Q8WWZ7 1642 aa23.19■■□□□ 1.3
COMMD4-205ENST00000562310 LOC105371045A0A1W2PR82 267 aa23.19■■□□□ 1.3
COMMD4-205ENST00000562310 IFT140Q96RY7 1462 aa23.18■■□□□ 1.3
COMMD4-205ENST00000562310 ERICH3Q5RHP9 1530 aa23.17■■□□□ 1.3
COMMD4-205ENST00000562310 PRXQ9BXM0 1461 aa23.14■■□□□ 1.29
COMMD4-205ENST00000562310 CUL7Q14999 1698 aa23.12■■□□□ 1.29
COMMD4-205ENST00000562310 GAPVD1Q14C86 1478 aa23.07■■□□□ 1.28
COMMD4-205ENST00000562310 IGF1RP08069 1367 aa23.07■■□□□ 1.28
COMMD4-205ENST00000562310 PBRM1Q86U86 1689 aa23.06■■□□□ 1.28
COMMD4-205ENST00000562310 RAPGEF2Q9Y4G8 1499 aa23.05■■□□□ 1.28
COMMD4-205ENST00000562310 TNIKQ9UKE5 1360 aa23.04■■□□□ 1.28
COMMD4-205ENST00000562310 TDRD9Q8NDG6 1382 aaKnown RBP23.01■■□□□ 1.27
COMMD4-205ENST00000562310 EIF4G3O43432 1585 aaKnown RBP22.98■■□□□ 1.27
COMMD4-205ENST00000562310 CARMIL1Q5VZK9 1371 aa22.98■■□□□ 1.27
COMMD4-205ENST00000562310 EHMT2Q96KQ7 1210 aa22.97■■□□□ 1.27
COMMD4-205ENST00000562310 GRIN2BQ13224 1484 aa22.96■■□□□ 1.27
COMMD4-205ENST00000562310 UBTFP17480 764 aaKnown RBP22.94■■□□□ 1.26
COMMD4-205ENST00000562310 ZNF608Q9ULD9 1512 aaPredicted RBP22.93■■□□□ 1.26
COMMD4-205ENST00000562310 AQRO60306 1485 aaKnown RBP eCLIP22.91■■□□□ 1.26
COMMD4-205ENST00000562310 ADAMTS12P58397 1594 aa22.9■■□□□ 1.26
COMMD4-205ENST00000562310 CEP162Q5TB80 1403 aa22.9■■□□□ 1.26
COMMD4-205ENST00000562310 FHAD1B1AJZ9 1412 aa22.85■■□□□ 1.25
COMMD4-205ENST00000562310 CTTNBP2Q8WZ74 1663 aa22.83■■□□□ 1.24
COMMD4-205ENST00000562310 MAGI1Q96QZ7 1491 aaPredicted RBP22.82■■□□□ 1.24
COMMD4-205ENST00000562310 SNAPC4Q5SXM2 1469 aa22.79■■□□□ 1.24
COMMD4-205ENST00000562310 CLIP1P30622 1438 aa22.76■■□□□ 1.23
COMMD4-205ENST00000562310 SYNJ2O15056 1496 aa22.7■■□□□ 1.22
COMMD4-205ENST00000562310 GRIN2AQ12879 1464 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms