RNA–Protein interactions for RNA: ENST00000561960.5

NSMCE1-202, Transcript of NSE1 homolog, SMC5-SMC6 complex component, humanhuman

TSL 3

Gene NSMCE1, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NSMCE1-202ENST00000561960 NISCHQ9Y2I1 1504 aa29.69■■■□□ 2.34
NSMCE1-202ENST00000561960 ABCC9O60706 1549 aa27.16■■□□□ 1.94
NSMCE1-202ENST00000561960 CCDC180Q9P1Z9 1646 aa26.75■■□□□ 1.87
NSMCE1-202ENST00000561960 DNAJC5BQ9UF47 199 aa25.67■■□□□ 1.7
NSMCE1-202ENST00000561960 RB1CC1Q8TDY2 1594 aa25.58■■□□□ 1.69
NSMCE1-202ENST00000561960 DCAF8L2P0C7V8 631 aa25.36■■□□□ 1.65
NSMCE1-202ENST00000561960 NACADO15069 1562 aa25.27■■□□□ 1.64
NSMCE1-202ENST00000561960 UNC13AQ9UPW8 1703 aa25.27■■□□□ 1.64
NSMCE1-202ENST00000561960 PABPN1Q86U42 306 aaKnown RBP eCLIP25.26■■□□□ 1.63
NSMCE1-202ENST00000561960 BICRAQ9NZM4 1560 aa24.93■■□□□ 1.58
NSMCE1-202ENST00000561960 MYO15BQ96JP2 1530 aa24.68■■□□□ 1.54
NSMCE1-202ENST00000561960 SCRIBQ14160 1630 aa24.58■■□□□ 1.53
NSMCE1-202ENST00000561960 ZCCHC6Q5VYS8 1495 aaKnown RBP24.55■■□□□ 1.52
NSMCE1-202ENST00000561960 CC2D2AQ9P2K1 1620 aa24.48■■□□□ 1.51
NSMCE1-202ENST00000561960 CECR2Q9BXF3 1484 aa24.38■■□□□ 1.49
NSMCE1-202ENST00000561960 DCAF1Q9Y4B6 1507 aa24.34■■□□□ 1.49
NSMCE1-202ENST00000561960 EIF4G1Q04637 1599 aaKnown RBP24.31■■□□□ 1.48
NSMCE1-202ENST00000561960 SHROOM4Q9ULL8 1493 aa24.26■■□□□ 1.47
NSMCE1-202ENST00000561960 DNAJC5Q9H3Z4 198 aa23.57■■□□□ 1.36
NSMCE1-202ENST00000561960 ERCC6Q03468 1493 aa23.4■■□□□ 1.34
NSMCE1-202ENST00000561960 NCAPD3P42695 1498 aa23.3■■□□□ 1.32
NSMCE1-202ENST00000561960 SMARCA4P51532 1647 aa23.3■■□□□ 1.32
NSMCE1-202ENST00000561960 NESP48681 1621 aa23.29■■□□□ 1.32
NSMCE1-202ENST00000561960 CUX2O14529 1486 aa23.29■■□□□ 1.32
NSMCE1-202ENST00000561960 ATAD2BQ9ULI0 1458 aa23.29■■□□□ 1.32
NSMCE1-202ENST00000561960 SMARCA2P51531 1590 aa23.18■■□□□ 1.3
NSMCE1-202ENST00000561960 HMGXB3Q12766 1538 aa23.16■■□□□ 1.3
NSMCE1-202ENST00000561960 BAZ1BQ9UIG0 1483 aaKnown RBP23.1■■□□□ 1.29
NSMCE1-202ENST00000561960 KIF21AQ7Z4S6 1674 aa23.04■■□□□ 1.28
NSMCE1-202ENST00000561960 BAZ1AQ9NRL2 1556 aaPredicted RBP23.04■■□□□ 1.28
NSMCE1-202ENST00000561960 THOC2Q8NI27 1593 aaKnown RBP23.03■■□□□ 1.28
NSMCE1-202ENST00000561960 MROH2BQ7Z745 1585 aa22.98■■□□□ 1.27
NSMCE1-202ENST00000561960 PEG3Q9GZU2 1588 aa22.91■■□□□ 1.26
NSMCE1-202ENST00000561960 LAMC3Q9Y6N6 1575 aa22.89■■□□□ 1.26
NSMCE1-202ENST00000561960 WIZO95785 1651 aa22.78■■□□□ 1.24
NSMCE1-202ENST00000561960 PDS5BQ9NTI5 1447 aa22.71■■□□□ 1.23
NSMCE1-202ENST00000561960 TRIM41Q8WV44 630 aa22.69■■□□□ 1.22
NSMCE1-202ENST00000561960 MRC2Q9UBG0 1479 aa22.62■■□□□ 1.21
NSMCE1-202ENST00000561960 CADPSQ9ULU8 1353 aa22.62■■□□□ 1.21
NSMCE1-202ENST00000561960 WDR62O43379 1518 aa22.57■■□□□ 1.2
NSMCE1-202ENST00000561960 CEP164Q9UPV0 1460 aa22.49■■□□□ 1.19
NSMCE1-202ENST00000561960 FANCD2Q9BXW9 1451 aa22.46■■□□□ 1.19
NSMCE1-202ENST00000561960 URB2Q14146 1524 aaKnown RBP22.34■■□□□ 1.17
NSMCE1-202ENST00000561960 RSF1Q96T23 1441 aaPredicted RBP22.32■■□□□ 1.16
NSMCE1-202ENST00000561960 CFTRP13569 1480 aa22.32■■□□□ 1.16
NSMCE1-202ENST00000561960 TOP2AP11388 1531 aaKnown RBP22.31■■□□□ 1.16
NSMCE1-202ENST00000561960 PRDM2Q13029 1718 aa22.28■■□□□ 1.16
NSMCE1-202ENST00000561960 OSCARQ8IYS5 282 aa22.2■■□□□ 1.14
NSMCE1-202ENST00000561960 ZNF608Q9ULD9 1512 aaPredicted RBP22.15■■□□□ 1.14
NSMCE1-202ENST00000561960 RIMBP3CA6NJZ7 1639 aa22.13■■□□□ 1.13
NSMCE1-202ENST00000561960 RIMBP3BA6NNM3 1639 aa22.13■■□□□ 1.13
NSMCE1-202ENST00000561960 RIMBP3Q9UFD9 1639 aa22.13■■□□□ 1.13
NSMCE1-202ENST00000561960 CCDC88BA6NC98 1476 aa22.09■■□□□ 1.13
NSMCE1-202ENST00000561960 EIF4G3O43432 1585 aaKnown RBP22.02■■□□□ 1.12
NSMCE1-202ENST00000561960 TOPBP1Q92547 1522 aa22.01■■□□□ 1.11
NSMCE1-202ENST00000561960 CHD1O14646 1710 aa22■■□□□ 1.11
NSMCE1-202ENST00000561960 IFT140Q96RY7 1462 aa21.99■■□□□ 1.11
NSMCE1-202ENST00000561960 ARHGEF11O15085 1522 aa21.96■■□□□ 1.11
NSMCE1-202ENST00000561960 DNMBPQ6XZF7 1577 aa21.91■■□□□ 1.1
NSMCE1-202ENST00000561960 AQRO60306 1485 aaKnown RBP eCLIP21.89■■□□□ 1.09
NSMCE1-202ENST00000561960 TARBP1Q13395 1621 aaKnown RBP21.87■■□□□ 1.09
NSMCE1-202ENST00000561960 FBLN2P98095 1184 aa21.84■■□□□ 1.09
NSMCE1-202ENST00000561960 CYB5RLQ6IPT4 315 aa21.83■■□□□ 1.09
NSMCE1-202ENST00000561960 RAD54L2Q9Y4B4 1467 aa21.79■■□□□ 1.08
NSMCE1-202ENST00000561960 POLA1P09884 1462 aaPredicted RBP21.77■■□□□ 1.08
NSMCE1-202ENST00000561960 ABCC8Q09428 1581 aa21.77■■□□□ 1.08
NSMCE1-202ENST00000561960 ARAP1Q96P48 1450 aa21.75■■□□□ 1.07
NSMCE1-202ENST00000561960 TRHP20396 242 aaPredicted RBP21.71■■□□□ 1.07
NSMCE1-202ENST00000561960 TDRD9Q8NDG6 1382 aaKnown RBP21.71■■□□□ 1.07
NSMCE1-202ENST00000561960 SNAPC4Q5SXM2 1469 aa21.65■■□□□ 1.06
NSMCE1-202ENST00000561960 FGD5Q6ZNL6 1462 aa21.64■■□□□ 1.05
NSMCE1-202ENST00000561960 SOGA1O94964 1423 aa21.63■■□□□ 1.05
NSMCE1-202ENST00000561960 CUX1P39880 1505 aa21.6■■□□□ 1.05
NSMCE1-202ENST00000561960 PBRM1Q86U86 1689 aa21.56■■□□□ 1.04
NSMCE1-202ENST00000561960 CLASP1Q7Z460 1538 aa21.55■■□□□ 1.04
NSMCE1-202ENST00000561960 WDR97A6NE52 1622 aa21.55■■□□□ 1.04
NSMCE1-202ENST00000561960 CHMP7Q8WUX9 453 aaPredicted RBP21.51■■□□□ 1.03
NSMCE1-202ENST00000561960 SYNJ1O43426 1573 aa21.5■■□□□ 1.03
NSMCE1-202ENST00000561960 GRIN2BQ13224 1484 aa21.45■■□□□ 1.02
NSMCE1-202ENST00000561960 MAGI1Q96QZ7 1491 aaPredicted RBP21.45■■□□□ 1.02
NSMCE1-202ENST00000561960 SYNJ2O15056 1496 aa21.41■■□□□ 1.02
NSMCE1-202ENST00000561960 GAPVD1Q14C86 1478 aa21.38■■□□□ 1.01
NSMCE1-202ENST00000561960 ABCA5Q8WWZ7 1642 aa21.37■■□□□ 1.01
NSMCE1-202ENST00000561960 ERCC6L2Q5T890 1561 aa21.36■■□□□ 1.01
NSMCE1-202ENST00000561960 SUPT5HO00267 1087 aaKnown RBP21.33■■□□□ 1.01
NSMCE1-202ENST00000561960 ABCA10Q8WWZ4 1543 aa21.27■■□□□ 1
NSMCE1-202ENST00000561960 CEP170Q5SW79 1584 aa21.25■□□□□ 0.99
NSMCE1-202ENST00000561960 ADAMTS12P58397 1594 aa21.23■□□□□ 0.99
NSMCE1-202ENST00000561960 GRIN2AQ12879 1464 aa21.22■□□□□ 0.99
NSMCE1-202ENST00000561960 AEBP2Q6ZN18 517 aaPredicted RBP21.21■□□□□ 0.99
NSMCE1-202ENST00000561960 BIVM-ERCC5R4GMW8 1640 aa21.17■□□□□ 0.98
NSMCE1-202ENST00000561960 TOP2BQ02880 1626 aa21.14■□□□□ 0.97
NSMCE1-202ENST00000561960 WRNQ14191 1432 aaPredicted RBP eCLIP21.13■□□□□ 0.97
NSMCE1-202ENST00000561960 KIF13AQ9H1H9 1805 aa21.11■□□□□ 0.97
NSMCE1-202ENST00000561960 SHROOM2Q13796 1616 aa21.1■□□□□ 0.97
NSMCE1-202ENST00000561960 NUP160Q12769 1436 aa21.09■□□□□ 0.97
NSMCE1-202ENST00000561960 FHAD1B1AJZ9 1412 aa21.04■□□□□ 0.96
NSMCE1-202ENST00000561960 PRG4Q92954 1404 aaPredicted RBP20.99■□□□□ 0.95
NSMCE1-202ENST00000561960 ERICH3Q5RHP9 1530 aa20.99■□□□□ 0.95
NSMCE1-202ENST00000561960 RUSC2Q8N2Y8 1516 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms