RNA–Protein interactions for RNA: ENST00000561321.1

SEMA4B-220, Transcript of semaphorin 4B, humanhuman

TSL 2

Gene SEMA4B, Length 563 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4B-220ENST00000561321 NISCHQ9Y2I1 1504 aa30.33■■■□□ 2.45
SEMA4B-220ENST00000561321 CCDC180Q9P1Z9 1646 aa27.07■■□□□ 1.92
SEMA4B-220ENST00000561321 ABCC9O60706 1549 aa26.84■■□□□ 1.89
SEMA4B-220ENST00000561321 RB1CC1Q8TDY2 1594 aa25.65■■□□□ 1.7
SEMA4B-220ENST00000561321 DCAF8L2P0C7V8 631 aa25.57■■□□□ 1.68
SEMA4B-220ENST00000561321 NACADO15069 1562 aa25.52■■□□□ 1.68
SEMA4B-220ENST00000561321 MYO15BQ96JP2 1530 aa25.22■■□□□ 1.63
SEMA4B-220ENST00000561321 ZCCHC6Q5VYS8 1495 aaKnown RBP25.21■■□□□ 1.63
SEMA4B-220ENST00000561321 UNC13AQ9UPW8 1703 aa25.09■■□□□ 1.61
SEMA4B-220ENST00000561321 PABPN1Q86U42 306 aaKnown RBP eCLIP25.05■■□□□ 1.6
SEMA4B-220ENST00000561321 DCAF1Q9Y4B6 1507 aa25.03■■□□□ 1.6
SEMA4B-220ENST00000561321 BICRAQ9NZM4 1560 aa24.87■■□□□ 1.57
SEMA4B-220ENST00000561321 DNAJC5BQ9UF47 199 aa24.86■■□□□ 1.57
SEMA4B-220ENST00000561321 SCRIBQ14160 1630 aa24.76■■□□□ 1.55
SEMA4B-220ENST00000561321 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
SEMA4B-220ENST00000561321 EIF4G1Q04637 1599 aaKnown RBP24.25■■□□□ 1.47
SEMA4B-220ENST00000561321 CC2D2AQ9P2K1 1620 aa24.24■■□□□ 1.47
SEMA4B-220ENST00000561321 CECR2Q9BXF3 1484 aa24.12■■□□□ 1.45
SEMA4B-220ENST00000561321 SMARCA4P51532 1647 aa23.61■■□□□ 1.37
SEMA4B-220ENST00000561321 ATAD2BQ9ULI0 1458 aa23.55■■□□□ 1.36
SEMA4B-220ENST00000561321 NCAPD3P42695 1498 aa23.54■■□□□ 1.36
SEMA4B-220ENST00000561321 BAZ1AQ9NRL2 1556 aaPredicted RBP23.53■■□□□ 1.36
SEMA4B-220ENST00000561321 SMARCA2P51531 1590 aa23.49■■□□□ 1.35
SEMA4B-220ENST00000561321 HMGXB3Q12766 1538 aa23.41■■□□□ 1.34
SEMA4B-220ENST00000561321 MROH2BQ7Z745 1585 aa23.4■■□□□ 1.34
SEMA4B-220ENST00000561321 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
SEMA4B-220ENST00000561321 PEG3Q9GZU2 1588 aa23.33■■□□□ 1.33
SEMA4B-220ENST00000561321 ERCC6Q03468 1493 aa23.16■■□□□ 1.3
SEMA4B-220ENST00000561321 WIZO95785 1651 aa23.16■■□□□ 1.3
SEMA4B-220ENST00000561321 NESP48681 1621 aa23.14■■□□□ 1.29
SEMA4B-220ENST00000561321 RSF1Q96T23 1441 aaPredicted RBP23.01■■□□□ 1.27
SEMA4B-220ENST00000561321 LAMC3Q9Y6N6 1575 aa22.98■■□□□ 1.27
SEMA4B-220ENST00000561321 CUX2O14529 1486 aa22.95■■□□□ 1.26
SEMA4B-220ENST00000561321 CADPSQ9ULU8 1353 aa22.87■■□□□ 1.25
SEMA4B-220ENST00000561321 KIF21AQ7Z4S6 1674 aa22.86■■□□□ 1.25
SEMA4B-220ENST00000561321 TOP2AP11388 1531 aaKnown RBP22.86■■□□□ 1.25
SEMA4B-220ENST00000561321 PDS5BQ9NTI5 1447 aa22.85■■□□□ 1.25
SEMA4B-220ENST00000561321 THOC2Q8NI27 1593 aaKnown RBP22.82■■□□□ 1.24
SEMA4B-220ENST00000561321 CFTRP13569 1480 aa22.66■■□□□ 1.22
SEMA4B-220ENST00000561321 MRC2Q9UBG0 1479 aa22.65■■□□□ 1.22
SEMA4B-220ENST00000561321 FANCD2Q9BXW9 1451 aa22.63■■□□□ 1.21
SEMA4B-220ENST00000561321 CEP164Q9UPV0 1460 aa22.63■■□□□ 1.21
SEMA4B-220ENST00000561321 CCDC88BA6NC98 1476 aa22.6■■□□□ 1.21
SEMA4B-220ENST00000561321 DNAJC5Q9H3Z4 198 aa22.58■■□□□ 1.21
SEMA4B-220ENST00000561321 WDR62O43379 1518 aa22.57■■□□□ 1.2
SEMA4B-220ENST00000561321 PRDM2Q13029 1718 aa22.5■■□□□ 1.19
SEMA4B-220ENST00000561321 URB2Q14146 1524 aaKnown RBP22.41■■□□□ 1.18
SEMA4B-220ENST00000561321 SUPT5HO00267 1087 aaKnown RBP22.31■■□□□ 1.16
SEMA4B-220ENST00000561321 TOPBP1Q92547 1522 aa22.23■■□□□ 1.15
SEMA4B-220ENST00000561321 ABCC8Q09428 1581 aa22.17■■□□□ 1.14
SEMA4B-220ENST00000561321 DNMBPQ6XZF7 1577 aa22.17■■□□□ 1.14
SEMA4B-220ENST00000561321 IFT140Q96RY7 1462 aa22.15■■□□□ 1.14
SEMA4B-220ENST00000561321 ZNF608Q9ULD9 1512 aaPredicted RBP22.11■■□□□ 1.13
SEMA4B-220ENST00000561321 POLA1P09884 1462 aaPredicted RBP22.03■■□□□ 1.12
SEMA4B-220ENST00000561321 EIF4G3O43432 1585 aaKnown RBP22■■□□□ 1.11
SEMA4B-220ENST00000561321 TARBP1Q13395 1621 aaKnown RBP22■■□□□ 1.11
SEMA4B-220ENST00000561321 OSCARQ8IYS5 282 aa21.97■■□□□ 1.11
SEMA4B-220ENST00000561321 CUX1P39880 1505 aa21.96■■□□□ 1.11
SEMA4B-220ENST00000561321 RAD54L2Q9Y4B4 1467 aa21.96■■□□□ 1.11
SEMA4B-220ENST00000561321 AQRO60306 1485 aaKnown RBP eCLIP21.95■■□□□ 1.1
SEMA4B-220ENST00000561321 FGD5Q6ZNL6 1462 aa21.94■■□□□ 1.1
SEMA4B-220ENST00000561321 SOGA1O94964 1423 aa21.93■■□□□ 1.1
SEMA4B-220ENST00000561321 TDRD9Q8NDG6 1382 aaKnown RBP21.87■■□□□ 1.09
SEMA4B-220ENST00000561321 TRIM41Q8WV44 630 aa21.82■■□□□ 1.08
SEMA4B-220ENST00000561321 CHD1O14646 1710 aa21.8■■□□□ 1.08
SEMA4B-220ENST00000561321 FBLN2P98095 1184 aa21.79■■□□□ 1.08
SEMA4B-220ENST00000561321 WDR97A6NE52 1622 aa21.77■■□□□ 1.07
SEMA4B-220ENST00000561321 SNAPC4Q5SXM2 1469 aa21.74■■□□□ 1.07
SEMA4B-220ENST00000561321 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
SEMA4B-220ENST00000561321 GRIN2BQ13224 1484 aa21.7■■□□□ 1.06
SEMA4B-220ENST00000561321 SYNJ1O43426 1573 aa21.7■■□□□ 1.06
SEMA4B-220ENST00000561321 TOP2BQ02880 1626 aa21.69■■□□□ 1.06
SEMA4B-220ENST00000561321 BIVM-ERCC5R4GMW8 1640 aa21.69■■□□□ 1.06
SEMA4B-220ENST00000561321 ABCA10Q8WWZ4 1543 aa21.68■■□□□ 1.06
SEMA4B-220ENST00000561321 PBRM1Q86U86 1689 aa21.67■■□□□ 1.06
SEMA4B-220ENST00000561321 RIMBP3CA6NJZ7 1639 aa21.67■■□□□ 1.06
SEMA4B-220ENST00000561321 RIMBP3BA6NNM3 1639 aa21.67■■□□□ 1.06
SEMA4B-220ENST00000561321 RIMBP3Q9UFD9 1639 aa21.67■■□□□ 1.06
SEMA4B-220ENST00000561321 GAPVD1Q14C86 1478 aa21.67■■□□□ 1.06
SEMA4B-220ENST00000561321 MAGI1Q96QZ7 1491 aaPredicted RBP21.65■■□□□ 1.06
SEMA4B-220ENST00000561321 CHMP7Q8WUX9 453 aaPredicted RBP21.64■■□□□ 1.05
SEMA4B-220ENST00000561321 ABCA5Q8WWZ7 1642 aa21.63■■□□□ 1.05
SEMA4B-220ENST00000561321 ARHGEF11O15085 1522 aa21.63■■□□□ 1.05
SEMA4B-220ENST00000561321 SYNJ2O15056 1496 aa21.58■■□□□ 1.05
SEMA4B-220ENST00000561321 CLASP1Q7Z460 1538 aa21.5■■□□□ 1.03
SEMA4B-220ENST00000561321 CYB5RLQ6IPT4 315 aa21.48■■□□□ 1.03
SEMA4B-220ENST00000561321 ADAMTS12P58397 1594 aa21.46■■□□□ 1.03
SEMA4B-220ENST00000561321 ARAP1Q96P48 1450 aa21.44■■□□□ 1.02
SEMA4B-220ENST00000561321 GRIN2AQ12879 1464 aa21.43■■□□□ 1.02
SEMA4B-220ENST00000561321 ERICH3Q5RHP9 1530 aa21.42■■□□□ 1.02
SEMA4B-220ENST00000561321 FHAD1B1AJZ9 1412 aa21.39■■□□□ 1.02
SEMA4B-220ENST00000561321 CEP170Q5SW79 1584 aa21.34■■□□□ 1.01
SEMA4B-220ENST00000561321 NUP160Q12769 1436 aa21.32■■□□□ 1
SEMA4B-220ENST00000561321 KIF27Q86VH2 1401 aa21.29■■□□□ 1
SEMA4B-220ENST00000561321 ERCC6L2Q5T890 1561 aa21.23■□□□□ 0.99
SEMA4B-220ENST00000561321 IGF1RP08069 1367 aa21.22■□□□□ 0.99
SEMA4B-220ENST00000561321 SHROOM2Q13796 1616 aa21.19■□□□□ 0.98
SEMA4B-220ENST00000561321 CUL7Q14999 1698 aa21.18■□□□□ 0.98
SEMA4B-220ENST00000561321 TRHP20396 242 aaPredicted RBP21.16■□□□□ 0.98
SEMA4B-220ENST00000561321 RUSC2Q8N2Y8 1516 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 130.6 ms