RNA–Protein interactions for RNA: ENST00000561271.1

CDC42BPB-208, Transcript of CDC42 binding protein kinase beta, humanhuman

TSL 3

Gene CDC42BPB, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPB-208ENST00000561271 NISCHQ9Y2I1 1504 aa42.76■■■■■ 4.44
CDC42BPB-208ENST00000561271 CCDC180Q9P1Z9 1646 aa38.38■■■■□ 3.74
CDC42BPB-208ENST00000561271 ABCC9O60706 1549 aa37.81■■■■□ 3.64
CDC42BPB-208ENST00000561271 RB1CC1Q8TDY2 1594 aa36.22■■■■□ 3.39
CDC42BPB-208ENST00000561271 NACADO15069 1562 aa36.03■■■■□ 3.36
CDC42BPB-208ENST00000561271 DCAF8L2P0C7V8 631 aa35.74■■■■□ 3.31
CDC42BPB-208ENST00000561271 UNC13AQ9UPW8 1703 aa35.69■■■■□ 3.3
CDC42BPB-208ENST00000561271 MYO15BQ96JP2 1530 aa35.62■■■■□ 3.29
CDC42BPB-208ENST00000561271 ZCCHC6Q5VYS8 1495 aaKnown RBP35.56■■■■□ 3.28
CDC42BPB-208ENST00000561271 DCAF1Q9Y4B6 1507 aa35.33■■■■□ 3.25
CDC42BPB-208ENST00000561271 BICRAQ9NZM4 1560 aa35.18■■■■□ 3.22
CDC42BPB-208ENST00000561271 PABPN1Q86U42 306 aaKnown RBP eCLIP35.13■■■■□ 3.21
CDC42BPB-208ENST00000561271 SCRIBQ14160 1630 aa34.96■■■■□ 3.19
CDC42BPB-208ENST00000561271 DNAJC5BQ9UF47 199 aa34.95■■■■□ 3.19
CDC42BPB-208ENST00000561271 SHROOM4Q9ULL8 1493 aa34.65■■■■□ 3.14
CDC42BPB-208ENST00000561271 EIF4G1Q04637 1599 aaKnown RBP34.26■■■■□ 3.07
CDC42BPB-208ENST00000561271 CC2D2AQ9P2K1 1620 aa34.26■■■■□ 3.07
CDC42BPB-208ENST00000561271 CECR2Q9BXF3 1484 aa33.98■■■■□ 3.03
CDC42BPB-208ENST00000561271 SMARCA4P51532 1647 aa33.38■■■□□ 2.93
CDC42BPB-208ENST00000561271 BAZ1AQ9NRL2 1556 aaPredicted RBP33.19■■■□□ 2.9
CDC42BPB-208ENST00000561271 NCAPD3P42695 1498 aa33.16■■■□□ 2.9
CDC42BPB-208ENST00000561271 ATAD2BQ9ULI0 1458 aa33.16■■■□□ 2.9
CDC42BPB-208ENST00000561271 SMARCA2P51531 1590 aa33.15■■■□□ 2.9
CDC42BPB-208ENST00000561271 HMGXB3Q12766 1538 aa33.08■■■□□ 2.89
CDC42BPB-208ENST00000561271 PEG3Q9GZU2 1588 aa33■■■□□ 2.87
CDC42BPB-208ENST00000561271 MROH2BQ7Z745 1585 aa32.97■■■□□ 2.87
CDC42BPB-208ENST00000561271 BAZ1BQ9UIG0 1483 aaKnown RBP32.91■■■□□ 2.86
CDC42BPB-208ENST00000561271 WIZO95785 1651 aa32.71■■■□□ 2.83
CDC42BPB-208ENST00000561271 NESP48681 1621 aa32.62■■■□□ 2.81
CDC42BPB-208ENST00000561271 ERCC6Q03468 1493 aa32.6■■■□□ 2.81
CDC42BPB-208ENST00000561271 LAMC3Q9Y6N6 1575 aa32.48■■■□□ 2.79
CDC42BPB-208ENST00000561271 KIF21AQ7Z4S6 1674 aa32.42■■■□□ 2.78
CDC42BPB-208ENST00000561271 CUX2O14529 1486 aa32.39■■■□□ 2.78
CDC42BPB-208ENST00000561271 RSF1Q96T23 1441 aaPredicted RBP32.35■■■□□ 2.77
CDC42BPB-208ENST00000561271 THOC2Q8NI27 1593 aaKnown RBP32.32■■■□□ 2.77
CDC42BPB-208ENST00000561271 TOP2AP11388 1531 aaKnown RBP32.26■■■□□ 2.75
CDC42BPB-208ENST00000561271 CADPSQ9ULU8 1353 aa32.14■■■□□ 2.74
CDC42BPB-208ENST00000561271 PDS5BQ9NTI5 1447 aa32.13■■■□□ 2.73
CDC42BPB-208ENST00000561271 PRDM2Q13029 1718 aa32.03■■■□□ 2.72
CDC42BPB-208ENST00000561271 MRC2Q9UBG0 1479 aa31.93■■■□□ 2.7
CDC42BPB-208ENST00000561271 CFTRP13569 1480 aa31.92■■■□□ 2.7
CDC42BPB-208ENST00000561271 CEP164Q9UPV0 1460 aa31.9■■■□□ 2.7
CDC42BPB-208ENST00000561271 WDR62O43379 1518 aa31.89■■■□□ 2.7
CDC42BPB-208ENST00000561271 FANCD2Q9BXW9 1451 aa31.86■■■□□ 2.69
CDC42BPB-208ENST00000561271 CCDC88BA6NC98 1476 aa31.79■■■□□ 2.68
CDC42BPB-208ENST00000561271 DNAJC5Q9H3Z4 198 aa31.75■■■□□ 2.67
CDC42BPB-208ENST00000561271 URB2Q14146 1524 aaKnown RBP31.61■■■□□ 2.65
CDC42BPB-208ENST00000561271 TOPBP1Q92547 1522 aa31.34■■■□□ 2.61
CDC42BPB-208ENST00000561271 DNMBPQ6XZF7 1577 aa31.32■■■□□ 2.6
CDC42BPB-208ENST00000561271 ABCC8Q09428 1581 aa31.23■■■□□ 2.59
CDC42BPB-208ENST00000561271 IFT140Q96RY7 1462 aa31.2■■■□□ 2.58
CDC42BPB-208ENST00000561271 SUPT5HO00267 1087 aaKnown RBP31.16■■■□□ 2.58
CDC42BPB-208ENST00000561271 ZNF608Q9ULD9 1512 aaPredicted RBP31.14■■■□□ 2.58
CDC42BPB-208ENST00000561271 EIF4G3O43432 1585 aaKnown RBP31.13■■■□□ 2.57
CDC42BPB-208ENST00000561271 TARBP1Q13395 1621 aaKnown RBP31.11■■■□□ 2.57
CDC42BPB-208ENST00000561271 POLA1P09884 1462 aaPredicted RBP31.04■■■□□ 2.56
CDC42BPB-208ENST00000561271 CUX1P39880 1505 aa30.98■■■□□ 2.55
CDC42BPB-208ENST00000561271 CHD1O14646 1710 aa30.93■■■□□ 2.54
CDC42BPB-208ENST00000561271 FGD5Q6ZNL6 1462 aa30.92■■■□□ 2.54
CDC42BPB-208ENST00000561271 RAD54L2Q9Y4B4 1467 aa30.89■■■□□ 2.54
CDC42BPB-208ENST00000561271 WDR97A6NE52 1622 aa30.88■■■□□ 2.53
CDC42BPB-208ENST00000561271 AQRO60306 1485 aaKnown RBP eCLIP30.86■■■□□ 2.533e-6■■■■□ 24.7
CDC42BPB-208ENST00000561271 OSCARQ8IYS5 282 aa30.81■■■□□ 2.52
CDC42BPB-208ENST00000561271 SOGA1O94964 1423 aa30.81■■■□□ 2.52
CDC42BPB-208ENST00000561271 PBRM1Q86U86 1689 aa30.74■■■□□ 2.51
CDC42BPB-208ENST00000561271 BIVM-ERCC5R4GMW8 1640 aa30.7■■■□□ 2.51
CDC42BPB-208ENST00000561271 TDRD9Q8NDG6 1382 aaKnown RBP30.69■■■□□ 2.5
CDC42BPB-208ENST00000561271 RIMBP3CA6NJZ7 1639 aa30.66■■■□□ 2.5
CDC42BPB-208ENST00000561271 RIMBP3BA6NNM3 1639 aa30.66■■■□□ 2.5
CDC42BPB-208ENST00000561271 RIMBP3Q9UFD9 1639 aa30.66■■■□□ 2.5
CDC42BPB-208ENST00000561271 SYNJ1O43426 1573 aa30.63■■■□□ 2.49
CDC42BPB-208ENST00000561271 SNAPC4Q5SXM2 1469 aa30.63■■■□□ 2.49
CDC42BPB-208ENST00000561271 TOP2BQ02880 1626 aa30.62■■■□□ 2.49
CDC42BPB-208ENST00000561271 ABCA5Q8WWZ7 1642 aa30.62■■■□□ 2.49
CDC42BPB-208ENST00000561271 TRIM41Q8WV44 630 aa30.6■■■□□ 2.49
CDC42BPB-208ENST00000561271 ABCA10Q8WWZ4 1543 aa30.56■■■□□ 2.48
CDC42BPB-208ENST00000561271 GRIN2BQ13224 1484 aa30.55■■■□□ 2.48
CDC42BPB-208ENST00000561271 MAGI1Q96QZ7 1491 aaPredicted RBP30.54■■■□□ 2.48
CDC42BPB-208ENST00000561271 WRNQ14191 1432 aaPredicted RBP eCLIP30.53■■■□□ 2.48
CDC42BPB-208ENST00000561271 ARHGEF11O15085 1522 aa30.52■■■□□ 2.48
CDC42BPB-208ENST00000561271 GAPVD1Q14C86 1478 aa30.5■■■□□ 2.47
CDC42BPB-208ENST00000561271 FBLN2P98095 1184 aa30.5■■■□□ 2.47
CDC42BPB-208ENST00000561271 SYNJ2O15056 1496 aa30.42■■■□□ 2.46
CDC42BPB-208ENST00000561271 CLASP1Q7Z460 1538 aa30.41■■■□□ 2.46
CDC42BPB-208ENST00000561271 ADAMTS12P58397 1594 aa30.35■■■□□ 2.45
CDC42BPB-208ENST00000561271 CHMP7Q8WUX9 453 aaPredicted RBP30.31■■■□□ 2.44
CDC42BPB-208ENST00000561271 ARAP1Q96P48 1450 aa30.25■■■□□ 2.43
CDC42BPB-208ENST00000561271 ERICH3Q5RHP9 1530 aa30.21■■■□□ 2.43
CDC42BPB-208ENST00000561271 GRIN2AQ12879 1464 aa30.2■■■□□ 2.43
CDC42BPB-208ENST00000561271 CEP170Q5SW79 1584 aa30.15■■■□□ 2.42
CDC42BPB-208ENST00000561271 CYB5RLQ6IPT4 315 aa30.1■■■□□ 2.41
CDC42BPB-208ENST00000561271 FHAD1B1AJZ9 1412 aa30.1■■■□□ 2.41
CDC42BPB-208ENST00000561271 NUP160Q12769 1436 aa30.05■■■□□ 2.4
CDC42BPB-208ENST00000561271 SHROOM2Q13796 1616 aa30.01■■■□□ 2.39
CDC42BPB-208ENST00000561271 ERCC6L2Q5T890 1561 aa29.98■■■□□ 2.39
CDC42BPB-208ENST00000561271 CUL7Q14999 1698 aa29.96■■■□□ 2.39
CDC42BPB-208ENST00000561271 RUSC2Q8N2Y8 1516 aa29.93■■■□□ 2.38
CDC42BPB-208ENST00000561271 KIF27Q86VH2 1401 aa29.9■■■□□ 2.38
CDC42BPB-208ENST00000561271 IGF1RP08069 1367 aa29.77■■■□□ 2.36
CDC42BPB-208ENST00000561271 PRG4Q92954 1404 aaPredicted RBP29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms