RNA–Protein interactions for RNA: ENST00000560660.1

IVD-212, Transcript of isovaleryl-CoA dehydrogenase, humanhuman

TSL 2

Gene IVD, Length 638 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IVD-212ENST00000560660 NISCHQ9Y2I1 1504 aa30.32■■■□□ 2.44
IVD-212ENST00000560660 ABCC9O60706 1549 aa28.18■■■□□ 2.1
IVD-212ENST00000560660 CCDC180Q9P1Z9 1646 aa27.38■■□□□ 1.97
IVD-212ENST00000560660 DNAJC5BQ9UF47 199 aa27.09■■□□□ 1.93
IVD-212ENST00000560660 RB1CC1Q8TDY2 1594 aa26.45■■□□□ 1.82
IVD-212ENST00000560660 PABPN1Q86U42 306 aaKnown RBP eCLIP26.22■■□□□ 1.79
IVD-212ENST00000560660 DCAF8L2P0C7V8 631 aa26.1■■□□□ 1.77
IVD-212ENST00000560660 NACADO15069 1562 aa26.1■■□□□ 1.77
IVD-212ENST00000560660 UNC13AQ9UPW8 1703 aa25.82■■□□□ 1.72
IVD-212ENST00000560660 BICRAQ9NZM4 1560 aa25.71■■□□□ 1.71
IVD-212ENST00000560660 MYO15BQ96JP2 1530 aa25.47■■□□□ 1.67
IVD-212ENST00000560660 CECR2Q9BXF3 1484 aa25.43■■□□□ 1.66
IVD-212ENST00000560660 CC2D2AQ9P2K1 1620 aa25.37■■□□□ 1.65
IVD-212ENST00000560660 DNAJC5Q9H3Z4 198 aa25.31■■□□□ 1.64
IVD-212ENST00000560660 SHROOM4Q9ULL8 1493 aa25.21■■□□□ 1.63
IVD-212ENST00000560660 EIF4G1Q04637 1599 aaKnown RBP25.14■■□□□ 1.61
IVD-212ENST00000560660 SCRIBQ14160 1630 aa25.01■■□□□ 1.59
IVD-212ENST00000560660 ZCCHC6Q5VYS8 1495 aaKnown RBP24.95■■□□□ 1.58
IVD-212ENST00000560660 DCAF1Q9Y4B6 1507 aa24.93■■□□□ 1.58
IVD-212ENST00000560660 CUX2O14529 1486 aa24.46■■□□□ 1.51
IVD-212ENST00000560660 ERCC6Q03468 1493 aa24.36■■□□□ 1.49
IVD-212ENST00000560660 NCAPD3P42695 1498 aa24.14■■□□□ 1.46
IVD-212ENST00000560660 NESP48681 1621 aa24.02■■□□□ 1.44
IVD-212ENST00000560660 TRIM41Q8WV44 630 aa24■■□□□ 1.43
IVD-212ENST00000560660 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
IVD-212ENST00000560660 SMARCA2P51531 1590 aa23.84■■□□□ 1.41
IVD-212ENST00000560660 HMGXB3Q12766 1538 aa23.84■■□□□ 1.41
IVD-212ENST00000560660 THOC2Q8NI27 1593 aaKnown RBP23.81■■□□□ 1.4
IVD-212ENST00000560660 SMARCA4P51532 1647 aa23.76■■□□□ 1.39
IVD-212ENST00000560660 BAZ1BQ9UIG0 1483 aaKnown RBP23.72■■□□□ 1.39
IVD-212ENST00000560660 LAMC3Q9Y6N6 1575 aa23.65■■□□□ 1.38
IVD-212ENST00000560660 KIF21AQ7Z4S6 1674 aa23.62■■□□□ 1.37
IVD-212ENST00000560660 PDS5BQ9NTI5 1447 aa23.61■■□□□ 1.37
IVD-212ENST00000560660 BAZ1AQ9NRL2 1556 aaPredicted RBP23.55■■□□□ 1.36
IVD-212ENST00000560660 PEG3Q9GZU2 1588 aa23.5■■□□□ 1.35
IVD-212ENST00000560660 MRC2Q9UBG0 1479 aa23.42■■□□□ 1.34
IVD-212ENST00000560660 CADPSQ9ULU8 1353 aa23.41■■□□□ 1.34
IVD-212ENST00000560660 MROH2BQ7Z745 1585 aa23.38■■□□□ 1.33
IVD-212ENST00000560660 OSCARQ8IYS5 282 aa23.37■■□□□ 1.33
IVD-212ENST00000560660 WDR62O43379 1518 aa23.34■■□□□ 1.33
IVD-212ENST00000560660 CEP164Q9UPV0 1460 aa23.19■■□□□ 1.3
IVD-212ENST00000560660 FANCD2Q9BXW9 1451 aa23.13■■□□□ 1.29
IVD-212ENST00000560660 AEBP2Q6ZN18 517 aaPredicted RBP23.09■■□□□ 1.29
IVD-212ENST00000560660 WIZO95785 1651 aa23.06■■□□□ 1.28
IVD-212ENST00000560660 RIMBP3CA6NJZ7 1639 aa23.04■■□□□ 1.28
IVD-212ENST00000560660 RIMBP3BA6NNM3 1639 aa23.04■■□□□ 1.28
IVD-212ENST00000560660 RIMBP3Q9UFD9 1639 aa23.04■■□□□ 1.28
IVD-212ENST00000560660 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
IVD-212ENST00000560660 CFTRP13569 1480 aa22.98■■□□□ 1.27
IVD-212ENST00000560660 URB2Q14146 1524 aaKnown RBP22.98■■□□□ 1.27
IVD-212ENST00000560660 CYB5RLQ6IPT4 315 aa22.91■■□□□ 1.26
IVD-212ENST00000560660 ARHGEF11O15085 1522 aa22.91■■□□□ 1.26
IVD-212ENST00000560660 TRHP20396 242 aaPredicted RBP22.88■■□□□ 1.25
IVD-212ENST00000560660 ZNF608Q9ULD9 1512 aaPredicted RBP22.83■■□□□ 1.25
IVD-212ENST00000560660 IFT140Q96RY7 1462 aa22.75■■□□□ 1.23
IVD-212ENST00000560660 TOP2AP11388 1531 aaKnown RBP22.67■■□□□ 1.22
IVD-212ENST00000560660 RSF1Q96T23 1441 aaPredicted RBP22.67■■□□□ 1.22
IVD-212ENST00000560660 FBLN2P98095 1184 aa22.64■■□□□ 1.21
IVD-212ENST00000560660 ARAP1Q96P48 1450 aa22.64■■□□□ 1.21
IVD-212ENST00000560660 TOPBP1Q92547 1522 aa22.62■■□□□ 1.21
IVD-212ENST00000560660 EIF4G3O43432 1585 aaKnown RBP22.59■■□□□ 1.21
IVD-212ENST00000560660 PRDM2Q13029 1718 aa22.58■■□□□ 1.21
IVD-212ENST00000560660 AQRO60306 1485 aaKnown RBP eCLIP22.58■■□□□ 1.25e-7■■■■■ 27.6
IVD-212ENST00000560660 CHD1O14646 1710 aa22.55■■□□□ 1.2
IVD-212ENST00000560660 CCDC88BA6NC98 1476 aa22.51■■□□□ 1.19
IVD-212ENST00000560660 ABCC8Q09428 1581 aa22.5■■□□□ 1.19
IVD-212ENST00000560660 DNMBPQ6XZF7 1577 aa22.43■■□□□ 1.18
IVD-212ENST00000560660 TARBP1Q13395 1621 aaKnown RBP22.42■■□□□ 1.18
IVD-212ENST00000560660 TDRD9Q8NDG6 1382 aaKnown RBP22.36■■□□□ 1.17
IVD-212ENST00000560660 POLA1P09884 1462 aaPredicted RBP22.34■■□□□ 1.17
IVD-212ENST00000560660 RAD54L2Q9Y4B4 1467 aa22.33■■□□□ 1.16
IVD-212ENST00000560660 CHMP7Q8WUX9 453 aaPredicted RBP22.32■■□□□ 1.16
IVD-212ENST00000560660 SOGA1O94964 1423 aa22.28■■□□□ 1.16
IVD-212ENST00000560660 CLASP1Q7Z460 1538 aa22.27■■□□□ 1.16
IVD-212ENST00000560660 SNAPC4Q5SXM2 1469 aa22.27■■□□□ 1.16
IVD-212ENST00000560660 SYNJ1O43426 1573 aa22.21■■□□□ 1.15
IVD-212ENST00000560660 GAPVD1Q14C86 1478 aa22.15■■□□□ 1.14
IVD-212ENST00000560660 MAGI1Q96QZ7 1491 aaPredicted RBP22.14■■□□□ 1.13
IVD-212ENST00000560660 FGD5Q6ZNL6 1462 aa22.12■■□□□ 1.13
IVD-212ENST00000560660 SYNJ2O15056 1496 aa22.1■■□□□ 1.13
IVD-212ENST00000560660 GRIN2BQ13224 1484 aa22.1■■□□□ 1.13
IVD-212ENST00000560660 WDR97A6NE52 1622 aa22.08■■□□□ 1.13
IVD-212ENST00000560660 CUX1P39880 1505 aa21.99■■□□□ 1.11
IVD-212ENST00000560660 ERCC6L2Q5T890 1561 aa21.95■■□□□ 1.1
IVD-212ENST00000560660 PBRM1Q86U86 1689 aa21.92■■□□□ 1.1
IVD-212ENST00000560660 GRIN2AQ12879 1464 aa21.82■■□□□ 1.08
IVD-212ENST00000560660 CEP170Q5SW79 1584 aa21.82■■□□□ 1.08
IVD-212ENST00000560660 ABCA10Q8WWZ4 1543 aa21.8■■□□□ 1.08
IVD-212ENST00000560660 ABCA5Q8WWZ7 1642 aa21.79■■□□□ 1.08
IVD-212ENST00000560660 KIF13AQ9H1H9 1805 aa21.78■■□□□ 1.08
IVD-212ENST00000560660 NUP160Q12769 1436 aa21.76■■□□□ 1.07
IVD-212ENST00000560660 FAM69CQ0P6D2 419 aa21.75■■□□□ 1.07
IVD-212ENST00000560660 ILDR1Q86SU0 546 aaPredicted RBP21.75■■□□□ 1.07
IVD-212ENST00000560660 KDM4FA0A1W2PPD8 638 aa21.71■■□□□ 1.07
IVD-212ENST00000560660 SHROOM2Q13796 1616 aa21.69■■□□□ 1.06
IVD-212ENST00000560660 ADAMTS12P58397 1594 aa21.68■■□□□ 1.06
IVD-212ENST00000560660 PRG4Q92954 1404 aaPredicted RBP21.67■■□□□ 1.06
IVD-212ENST00000560660 NPM1P06748 294 aaKnown RBP eCLIP21.67■■□□□ 1.06
IVD-212ENST00000560660 JPH4Q96JJ6 628 aa21.65■■□□□ 1.06
IVD-212ENST00000560660 FHAD1B1AJZ9 1412 aa21.64■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 1425.7 ms