RNA–Protein interactions for RNA: ENST00000560583.5

RPL28-210, Transcript of ribosomal protein L28, humanhuman

TSL 2 BASIC

Gene RPL28, Length 1,204 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-210ENST00000560583 NISCHQ9Y2I1 1504 aa45■■■■■ 4.79
RPL28-210ENST00000560583 CCDC180Q9P1Z9 1646 aa40.4■■■■■ 4.06
RPL28-210ENST00000560583 ABCC9O60706 1549 aa40.11■■■■■ 4.01
RPL28-210ENST00000560583 RB1CC1Q8TDY2 1594 aa38.28■■■■□ 3.72
RPL28-210ENST00000560583 NACADO15069 1562 aa38.05■■■■□ 3.68
RPL28-210ENST00000560583 DCAF8L2P0C7V8 631 aa37.65■■■■□ 3.62
RPL28-210ENST00000560583 MYO15BQ96JP2 1530 aa37.61■■■■□ 3.61
RPL28-210ENST00000560583 UNC13AQ9UPW8 1703 aa37.58■■■■□ 3.61
RPL28-210ENST00000560583 DNAJC5BQ9UF47 199 aa37.43■■■■□ 3.58
RPL28-210ENST00000560583 ZCCHC6Q5VYS8 1495 aaKnown RBP37.38■■■■□ 3.57
RPL28-210ENST00000560583 PABPN1Q86U42 306 aaKnown RBP eCLIP37.27■■■■□ 3.56
RPL28-210ENST00000560583 BICRAQ9NZM4 1560 aa37.25■■■■□ 3.55
RPL28-210ENST00000560583 DCAF1Q9Y4B6 1507 aa37.2■■■■□ 3.55
RPL28-210ENST00000560583 SCRIBQ14160 1630 aa36.78■■■■□ 3.48
RPL28-210ENST00000560583 SHROOM4Q9ULL8 1493 aa36.69■■■■□ 3.46
RPL28-210ENST00000560583 CC2D2AQ9P2K1 1620 aa36.3■■■■□ 3.4
RPL28-210ENST00000560583 EIF4G1Q04637 1599 aaKnown RBP36.27■■■■□ 3.4
RPL28-210ENST00000560583 CECR2Q9BXF3 1484 aa36.1■■■■□ 3.37
RPL28-210ENST00000560583 SMARCA4P51532 1647 aa35.11■■■■□ 3.21
RPL28-210ENST00000560583 NCAPD3P42695 1498 aa35.09■■■■□ 3.21
RPL28-210ENST00000560583 ATAD2BQ9ULI0 1458 aa35.03■■■■□ 3.2
RPL28-210ENST00000560583 SMARCA2P51531 1590 aa34.96■■■■□ 3.19
RPL28-210ENST00000560583 HMGXB3Q12766 1538 aa34.93■■■■□ 3.18
RPL28-210ENST00000560583 BAZ1AQ9NRL2 1556 aaPredicted RBP34.91■■■■□ 3.18
RPL28-210ENST00000560583 PEG3Q9GZU2 1588 aa34.78■■■■□ 3.16
RPL28-210ENST00000560583 BAZ1BQ9UIG0 1483 aaKnown RBP34.7■■■■□ 3.15
RPL28-210ENST00000560583 MROH2BQ7Z745 1585 aa34.7■■■■□ 3.14
RPL28-210ENST00000560583 ERCC6Q03468 1493 aa34.57■■■■□ 3.12
RPL28-210ENST00000560583 NESP48681 1621 aa34.55■■■■□ 3.12
RPL28-210ENST00000560583 CUX2O14529 1486 aa34.5■■■■□ 3.11
RPL28-210ENST00000560583 LAMC3Q9Y6N6 1575 aa34.32■■■■□ 3.09
RPL28-210ENST00000560583 WIZO95785 1651 aa34.31■■■■□ 3.08
RPL28-210ENST00000560583 THOC2Q8NI27 1593 aaKnown RBP34.25■■■■□ 3.07
RPL28-210ENST00000560583 KIF21AQ7Z4S6 1674 aa34.19■■■■□ 3.06
RPL28-210ENST00000560583 DNAJC5Q9H3Z4 198 aa34.18■■■■□ 3.06
RPL28-210ENST00000560583 PDS5BQ9NTI5 1447 aa34.02■■■■□ 3.04
RPL28-210ENST00000560583 CADPSQ9ULU8 1353 aa33.99■■■■□ 3.03
RPL28-210ENST00000560583 RSF1Q96T23 1441 aaPredicted RBP33.98■■■■□ 3.03
RPL28-210ENST00000560583 TOP2AP11388 1531 aaKnown RBP33.88■■■■□ 3.01
RPL28-210ENST00000560583 MRC2Q9UBG0 1479 aa33.8■■■■□ 3
RPL28-210ENST00000560583 WDR62O43379 1518 aa33.77■■■■□ 3
RPL28-210ENST00000560583 CFTRP13569 1480 aa33.7■■■□□ 2.99
RPL28-210ENST00000560583 CEP164Q9UPV0 1460 aa33.69■■■□□ 2.98
RPL28-210ENST00000560583 FANCD2Q9BXW9 1451 aa33.66■■■□□ 2.98
RPL28-210ENST00000560583 PRDM2Q13029 1718 aa33.54■■■□□ 2.96
RPL28-210ENST00000560583 CCDC88BA6NC98 1476 aa33.43■■■□□ 2.94
RPL28-210ENST00000560583 URB2Q14146 1524 aaKnown RBP33.43■■■□□ 2.94
RPL28-210ENST00000560583 TOPBP1Q92547 1522 aa33.07■■■□□ 2.89
RPL28-210ENST00000560583 DNMBPQ6XZF7 1577 aa33■■■□□ 2.87
RPL28-210ENST00000560583 IFT140Q96RY7 1462 aa32.99■■■□□ 2.87
RPL28-210ENST00000560583 ZNF608Q9ULD9 1512 aaPredicted RBP32.97■■■□□ 2.87
RPL28-210ENST00000560583 ABCC8Q09428 1581 aa32.92■■■□□ 2.86
RPL28-210ENST00000560583 EIF4G3O43432 1585 aaKnown RBP32.87■■■□□ 2.85
RPL28-210ENST00000560583 TARBP1Q13395 1621 aaKnown RBP32.83■■■□□ 2.85
RPL28-210ENST00000560583 OSCARQ8IYS5 282 aa32.79■■■□□ 2.84
RPL28-210ENST00000560583 POLA1P09884 1462 aaPredicted RBP32.75■■■□□ 2.83
RPL28-210ENST00000560583 TRIM41Q8WV44 630 aa32.72■■■□□ 2.83
RPL28-210ENST00000560583 AQRO60306 1485 aaKnown RBP eCLIP32.63■■■□□ 2.813e-8■■■■□ 26.2
RPL28-210ENST00000560583 CHD1O14646 1710 aa32.61■■■□□ 2.81
RPL28-210ENST00000560583 CUX1P39880 1505 aa32.6■■■□□ 2.81
RPL28-210ENST00000560583 RAD54L2Q9Y4B4 1467 aa32.6■■■□□ 2.81
RPL28-210ENST00000560583 RIMBP3CA6NJZ7 1639 aa32.58■■■□□ 2.81
RPL28-210ENST00000560583 RIMBP3BA6NNM3 1639 aa32.58■■■□□ 2.81
RPL28-210ENST00000560583 RIMBP3Q9UFD9 1639 aa32.58■■■□□ 2.81
RPL28-210ENST00000560583 FGD5Q6ZNL6 1462 aa32.56■■■□□ 2.8
RPL28-210ENST00000560583 SOGA1O94964 1423 aa32.5■■■□□ 2.79
RPL28-210ENST00000560583 WDR97A6NE52 1622 aa32.48■■■□□ 2.79
RPL28-210ENST00000560583 ARHGEF11O15085 1522 aa32.46■■■□□ 2.79
RPL28-210ENST00000560583 SUPT5HO00267 1087 aaKnown RBP32.45■■■□□ 2.79
RPL28-210ENST00000560583 TDRD9Q8NDG6 1382 aaKnown RBP32.43■■■□□ 2.78
RPL28-210ENST00000560583 SNAPC4Q5SXM2 1469 aa32.35■■■□□ 2.77
RPL28-210ENST00000560583 PBRM1Q86U86 1689 aa32.28■■■□□ 2.76
RPL28-210ENST00000560583 MAGI1Q96QZ7 1491 aaPredicted RBP32.26■■■□□ 2.75
RPL28-210ENST00000560583 GRIN2BQ13224 1484 aa32.25■■■□□ 2.75
RPL28-210ENST00000560583 FBLN2P98095 1184 aa32.25■■■□□ 2.75
RPL28-210ENST00000560583 ABCA5Q8WWZ7 1642 aa32.22■■■□□ 2.75
RPL28-210ENST00000560583 CLASP1Q7Z460 1538 aa32.21■■■□□ 2.75
RPL28-210ENST00000560583 ABCA10Q8WWZ4 1543 aa32.21■■■□□ 2.75
RPL28-210ENST00000560583 BIVM-ERCC5R4GMW8 1640 aa32.17■■■□□ 2.74
RPL28-210ENST00000560583 ARAP1Q96P48 1450 aa32.16■■■□□ 2.74
RPL28-210ENST00000560583 GAPVD1Q14C86 1478 aa32.16■■■□□ 2.74
RPL28-210ENST00000560583 SYNJ2O15056 1496 aa32.14■■■□□ 2.74
RPL28-210ENST00000560583 SYNJ1O43426 1573 aa32.13■■■□□ 2.73
RPL28-210ENST00000560583 TOP2BQ02880 1626 aa32.12■■■□□ 2.73
RPL28-210ENST00000560583 WRNQ14191 1432 aaPredicted RBP eCLIP32.04■■■□□ 2.72
RPL28-210ENST00000560583 CHMP7Q8WUX9 453 aaPredicted RBP32.04■■■□□ 2.72
RPL28-210ENST00000560583 CYB5RLQ6IPT4 315 aa32.03■■■□□ 2.72
RPL28-210ENST00000560583 ADAMTS12P58397 1594 aa31.96■■■□□ 2.71
RPL28-210ENST00000560583 GRIN2AQ12879 1464 aa31.87■■■□□ 2.69
RPL28-210ENST00000560583 CEP170Q5SW79 1584 aa31.81■■■□□ 2.68
RPL28-210ENST00000560583 ERICH3Q5RHP9 1530 aa31.8■■■□□ 2.68
RPL28-210ENST00000560583 NUP160Q12769 1436 aa31.77■■■□□ 2.68
RPL28-210ENST00000560583 FHAD1B1AJZ9 1412 aa31.75■■■□□ 2.67
RPL28-210ENST00000560583 ERCC6L2Q5T890 1561 aa31.73■■■□□ 2.67
RPL28-210ENST00000560583 SHROOM2Q13796 1616 aa31.68■■■□□ 2.66
RPL28-210ENST00000560583 TRHP20396 242 aaPredicted RBP31.57■■■□□ 2.64
RPL28-210ENST00000560583 RUSC2Q8N2Y8 1516 aa31.52■■■□□ 2.64
RPL28-210ENST00000560583 CUL7Q14999 1698 aa31.41■■■□□ 2.62
RPL28-210ENST00000560583 KIF27Q86VH2 1401 aa31.38■■■□□ 2.61
RPL28-210ENST00000560583 PRG4Q92954 1404 aaPredicted RBP31.38■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms