RNA–Protein interactions for RNA: ENST00000560519.1

HERC1-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-209ENST00000560519 NISCHQ9Y2I1 1504 aa24.45■■□□□ 1.51
HERC1-209ENST00000560519 CCDC180Q9P1Z9 1646 aa22.23■■□□□ 1.15
HERC1-209ENST00000560519 ABCC9O60706 1549 aa22.08■■□□□ 1.13
HERC1-209ENST00000560519 RB1CC1Q8TDY2 1594 aa21.13■□□□□ 0.97
HERC1-209ENST00000560519 NACADO15069 1562 aa20.93■□□□□ 0.94
HERC1-209ENST00000560519 UNC13AQ9UPW8 1703 aa20.7■□□□□ 0.9
HERC1-209ENST00000560519 MYO15BQ96JP2 1530 aa20.62■□□□□ 0.89
HERC1-209ENST00000560519 DNAJC5BQ9UF47 199 aa20.61■□□□□ 0.89
HERC1-209ENST00000560519 DCAF8L2P0C7V8 631 aa20.48■□□□□ 0.87
HERC1-209ENST00000560519 BICRAQ9NZM4 1560 aa20.42■□□□□ 0.86
HERC1-209ENST00000560519 PABPN1Q86U42 306 aaKnown RBP eCLIP20.38■□□□□ 0.85
HERC1-209ENST00000560519 SHROOM4Q9ULL8 1493 aa20.3■□□□□ 0.84
HERC1-209ENST00000560519 ZCCHC6Q5VYS8 1495 aaKnown RBP20.29■□□□□ 0.84
HERC1-209ENST00000560519 DCAF1Q9Y4B6 1507 aa20.28■□□□□ 0.84
HERC1-209ENST00000560519 SCRIBQ14160 1630 aa20.09■□□□□ 0.81
HERC1-209ENST00000560519 CC2D2AQ9P2K1 1620 aa20.04■□□□□ 0.8
HERC1-209ENST00000560519 EIF4G1Q04637 1599 aaKnown RBP19.98■□□□□ 0.79
HERC1-209ENST00000560519 CECR2Q9BXF3 1484 aa19.94■□□□□ 0.78
HERC1-209ENST00000560519 CUX2O14529 1486 aa19.22■□□□□ 0.67
HERC1-209ENST00000560519 NCAPD3P42695 1498 aa19.22■□□□□ 0.67
HERC1-209ENST00000560519 SMARCA2P51531 1590 aa19.19■□□□□ 0.66
HERC1-209ENST00000560519 HMGXB3Q12766 1538 aa19.19■□□□□ 0.66
HERC1-209ENST00000560519 SMARCA4P51532 1647 aa19.18■□□□□ 0.66
HERC1-209ENST00000560519 ERCC6Q03468 1493 aa19.16■□□□□ 0.66
HERC1-209ENST00000560519 DNAJC5Q9H3Z4 198 aa19.14■□□□□ 0.65
HERC1-209ENST00000560519 ATAD2BQ9ULI0 1458 aa19.13■□□□□ 0.65
HERC1-209ENST00000560519 BAZ1AQ9NRL2 1556 aaPredicted RBP19.08■□□□□ 0.65
HERC1-209ENST00000560519 PEG3Q9GZU2 1588 aa19.02■□□□□ 0.63
HERC1-209ENST00000560519 BAZ1BQ9UIG0 1483 aaKnown RBP19■□□□□ 0.63
HERC1-209ENST00000560519 LAMC3Q9Y6N6 1575 aa18.94■□□□□ 0.62
HERC1-209ENST00000560519 THOC2Q8NI27 1593 aaKnown RBP18.92■□□□□ 0.62
HERC1-209ENST00000560519 NESP48681 1621 aa18.9■□□□□ 0.62
HERC1-209ENST00000560519 KIF21AQ7Z4S6 1674 aa18.84■□□□□ 0.61
HERC1-209ENST00000560519 MROH2BQ7Z745 1585 aa18.8■□□□□ 0.6
HERC1-209ENST00000560519 PDS5BQ9NTI5 1447 aa18.74■□□□□ 0.59
HERC1-209ENST00000560519 WIZO95785 1651 aa18.63■□□□□ 0.57
HERC1-209ENST00000560519 WDR62O43379 1518 aa18.61■□□□□ 0.57
HERC1-209ENST00000560519 MRC2Q9UBG0 1479 aa18.6■□□□□ 0.57
HERC1-209ENST00000560519 CADPSQ9ULU8 1353 aa18.59■□□□□ 0.57
HERC1-209ENST00000560519 CEP164Q9UPV0 1460 aa18.53■□□□□ 0.56
HERC1-209ENST00000560519 PRDM2Q13029 1718 aa18.48■□□□□ 0.55
HERC1-209ENST00000560519 FANCD2Q9BXW9 1451 aa18.44■□□□□ 0.54
HERC1-209ENST00000560519 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
HERC1-209ENST00000560519 CFTRP13569 1480 aa18.39■□□□□ 0.54
HERC1-209ENST00000560519 RSF1Q96T23 1441 aaPredicted RBP18.32■□□□□ 0.52
HERC1-209ENST00000560519 URB2Q14146 1524 aaKnown RBP18.27■□□□□ 0.51
HERC1-209ENST00000560519 TRIM41Q8WV44 630 aa18.24■□□□□ 0.51
HERC1-209ENST00000560519 OSCARQ8IYS5 282 aa18.14■□□□□ 0.49
HERC1-209ENST00000560519 IFT140Q96RY7 1462 aa18.14■□□□□ 0.49
HERC1-209ENST00000560519 ABCC8Q09428 1581 aa18.1■□□□□ 0.49
HERC1-209ENST00000560519 EIF4G3O43432 1585 aaKnown RBP18.09■□□□□ 0.49
HERC1-209ENST00000560519 CCDC88BA6NC98 1476 aa18.09■□□□□ 0.49
HERC1-209ENST00000560519 RIMBP3CA6NJZ7 1639 aa18.09■□□□□ 0.49
HERC1-209ENST00000560519 RIMBP3BA6NNM3 1639 aa18.09■□□□□ 0.49
HERC1-209ENST00000560519 RIMBP3Q9UFD9 1639 aa18.09■□□□□ 0.49
HERC1-209ENST00000560519 DNMBPQ6XZF7 1577 aa18.08■□□□□ 0.48
HERC1-209ENST00000560519 TOPBP1Q92547 1522 aa18.08■□□□□ 0.48
HERC1-209ENST00000560519 ZNF608Q9ULD9 1512 aaPredicted RBP18.03■□□□□ 0.48
HERC1-209ENST00000560519 CHD1O14646 1710 aa18■□□□□ 0.47
HERC1-209ENST00000560519 TARBP1Q13395 1621 aaKnown RBP17.98■□□□□ 0.47
HERC1-209ENST00000560519 ARHGEF11O15085 1522 aa17.98■□□□□ 0.47
HERC1-209ENST00000560519 WDR97A6NE52 1622 aa17.93■□□□□ 0.46
HERC1-209ENST00000560519 POLA1P09884 1462 aaPredicted RBP17.88■□□□□ 0.45
HERC1-209ENST00000560519 AQRO60306 1485 aaKnown RBP eCLIP17.81■□□□□ 0.441e-6■■■□□ 18.3
HERC1-209ENST00000560519 SYNJ1O43426 1573 aa17.76■□□□□ 0.43
HERC1-209ENST00000560519 ARAP1Q96P48 1450 aa17.75■□□□□ 0.43
HERC1-209ENST00000560519 FGD5Q6ZNL6 1462 aa17.75■□□□□ 0.43
HERC1-209ENST00000560519 PBRM1Q86U86 1689 aa17.74■□□□□ 0.43
HERC1-209ENST00000560519 SNAPC4Q5SXM2 1469 aa17.74■□□□□ 0.43
HERC1-209ENST00000560519 MAGI1Q96QZ7 1491 aaPredicted RBP17.74■□□□□ 0.43
HERC1-209ENST00000560519 SOGA1O94964 1423 aa17.73■□□□□ 0.43
HERC1-209ENST00000560519 CLASP1Q7Z460 1538 aa17.72■□□□□ 0.43
HERC1-209ENST00000560519 RAD54L2Q9Y4B4 1467 aa17.72■□□□□ 0.43
HERC1-209ENST00000560519 CUX1P39880 1505 aa17.7■□□□□ 0.42
HERC1-209ENST00000560519 FBLN2P98095 1184 aa17.68■□□□□ 0.42
HERC1-209ENST00000560519 CYB5RLQ6IPT4 315 aa17.67■□□□□ 0.42
HERC1-209ENST00000560519 GRIN2BQ13224 1484 aa17.67■□□□□ 0.42
HERC1-209ENST00000560519 TDRD9Q8NDG6 1382 aaKnown RBP17.66■□□□□ 0.42
HERC1-209ENST00000560519 SYNJ2O15056 1496 aa17.64■□□□□ 0.41
HERC1-209ENST00000560519 ABCA5Q8WWZ7 1642 aa17.63■□□□□ 0.41
HERC1-209ENST00000560519 GAPVD1Q14C86 1478 aa17.57■□□□□ 0.4
HERC1-209ENST00000560519 CHMP7Q8WUX9 453 aaPredicted RBP17.57■□□□□ 0.4
HERC1-209ENST00000560519 TRHP20396 242 aaPredicted RBP17.56■□□□□ 0.4
HERC1-209ENST00000560519 ABCA10Q8WWZ4 1543 aa17.56■□□□□ 0.4
HERC1-209ENST00000560519 BIVM-ERCC5R4GMW8 1640 aa17.51■□□□□ 0.39
HERC1-209ENST00000560519 ADAMTS12P58397 1594 aa17.5■□□□□ 0.39
HERC1-209ENST00000560519 TOP2BQ02880 1626 aa17.46■□□□□ 0.39
HERC1-209ENST00000560519 GRIN2AQ12879 1464 aa17.45■□□□□ 0.38
HERC1-209ENST00000560519 WRNQ14191 1432 aaPredicted RBP eCLIP17.42■□□□□ 0.38
HERC1-209ENST00000560519 CEP170Q5SW79 1584 aa17.41■□□□□ 0.38
HERC1-209ENST00000560519 SHROOM2Q13796 1616 aa17.41■□□□□ 0.38
HERC1-209ENST00000560519 ERICH3Q5RHP9 1530 aa17.39■□□□□ 0.37
HERC1-209ENST00000560519 NUP160Q12769 1436 aa17.38■□□□□ 0.37
HERC1-209ENST00000560519 FHAD1B1AJZ9 1412 aa17.35■□□□□ 0.37
HERC1-209ENST00000560519 ERCC6L2Q5T890 1561 aa17.34■□□□□ 0.37
HERC1-209ENST00000560519 RUSC2Q8N2Y8 1516 aa17.28■□□□□ 0.36
HERC1-209ENST00000560519 KIF13AQ9H1H9 1805 aa17.27■□□□□ 0.36
HERC1-209ENST00000560519 SUPT5HO00267 1087 aaKnown RBP17.27■□□□□ 0.36
HERC1-209ENST00000560519 CUL7Q14999 1698 aa17.2■□□□□ 0.34
HERC1-209ENST00000560519 AEBP2Q6ZN18 517 aaPredicted RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms