RNA–Protein interactions for RNA: ENST00000560462.1

HERC1-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 647 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-208ENST00000560462 NISCHQ9Y2I1 1504 aa17.24■□□□□ 0.35
HERC1-208ENST00000560462 ABCC9O60706 1549 aa17.1■□□□□ 0.33
HERC1-208ENST00000560462 CHIC1Q5VXU3 224 aa17.05■□□□□ 0.32
HERC1-208ENST00000560462 DNAJC5BQ9UF47 199 aa17.04■□□□□ 0.32
HERC1-208ENST00000560462 AEBP2Q6ZN18 517 aaPredicted RBP16.69■□□□□ 0.26
HERC1-208ENST00000560462 DNAJC5Q9H3Z4 198 aa16.51■□□□□ 0.23
HERC1-208ENST00000560462 CCDC180Q9P1Z9 1646 aa15.94■□□□□ 0.14
HERC1-208ENST00000560462 RB1CC1Q8TDY2 1594 aa15.76■□□□□ 0.11
HERC1-208ENST00000560462 PABPN1Q86U42 306 aaKnown RBP eCLIP15.75■□□□□ 0.11
HERC1-208ENST00000560462 CECR2Q9BXF3 1484 aa15.52■□□□□ 0.08
HERC1-208ENST00000560462 NACADO15069 1562 aa15.36■□□□□ 0.05
HERC1-208ENST00000560462 CC2D2AQ9P2K1 1620 aa15.35■□□□□ 0.05
HERC1-208ENST00000560462 TRIM41Q8WV44 630 aa15.33■□□□□ 0.04
HERC1-208ENST00000560462 BICRAQ9NZM4 1560 aa15.32■□□□□ 0.04
HERC1-208ENST00000560462 UNC13AQ9UPW8 1703 aa15.3■□□□□ 0.04
HERC1-208ENST00000560462 CUX2O14529 1486 aa15.21■□□□□ 0.03
HERC1-208ENST00000560462 DCAF8L2P0C7V8 631 aa15.1■□□□□ 0.01
HERC1-208ENST00000560462 EIF4G1Q04637 1599 aaKnown RBP15.06■□□□□ 0
HERC1-208ENST00000560462 SHROOM4Q9ULL8 1493 aa15.03■□□□□ -0
HERC1-208ENST00000560462 PHF23Q9BUL5 403 aaPredicted RBP15.03■□□□□ -0
HERC1-208ENST00000560462 ERCC6Q03468 1493 aa14.87□□□□□ -0.03
HERC1-208ENST00000560462 MYO15BQ96JP2 1530 aa14.78□□□□□ -0.04
HERC1-208ENST00000560462 SCRIBQ14160 1630 aa14.52□□□□□ -0.08
HERC1-208ENST00000560462 SENP3Q9H4L4 574 aaPredicted RBP14.42□□□□□ -0.1
HERC1-208ENST00000560462 THOC2Q8NI27 1593 aaKnown RBP14.41□□□□□ -0.1
HERC1-208ENST00000560462 NESP48681 1621 aa14.35□□□□□ -0.11
HERC1-208ENST00000560462 OSCARQ8IYS5 282 aa14.35□□□□□ -0.11
HERC1-208ENST00000560462 ILDR1Q86SU0 546 aaPredicted RBP14.34□□□□□ -0.11
HERC1-208ENST00000560462 TRHP20396 242 aaPredicted RBP14.33□□□□□ -0.12
HERC1-208ENST00000560462 BAZ1AQ9NRL2 1556 aaPredicted RBP14.27□□□□□ -0.12
HERC1-208ENST00000560462 SMARCA2P51531 1590 aa14.24□□□□□ -0.13
HERC1-208ENST00000560462 RIMBP3CA6NJZ7 1639 aa14.23□□□□□ -0.13
HERC1-208ENST00000560462 RIMBP3BA6NNM3 1639 aa14.23□□□□□ -0.13
HERC1-208ENST00000560462 RIMBP3Q9UFD9 1639 aa14.23□□□□□ -0.13
HERC1-208ENST00000560462 NCAPD3P42695 1498 aa14.21□□□□□ -0.13
HERC1-208ENST00000560462 PLPPR3Q6T4P5 718 aa14.19□□□□□ -0.14
HERC1-208ENST00000560462 DCAF1Q9Y4B6 1507 aa14.16□□□□□ -0.14
HERC1-208ENST00000560462 ARHGEF11O15085 1522 aa14.1□□□□□ -0.15
HERC1-208ENST00000560462 CYB5RLQ6IPT4 315 aa14.09□□□□□ -0.15
HERC1-208ENST00000560462 KIF21AQ7Z4S6 1674 aa14.08□□□□□ -0.16
HERC1-208ENST00000560462 LAMC3Q9Y6N6 1575 aa14.06□□□□□ -0.16
HERC1-208ENST00000560462 PDS5BQ9NTI5 1447 aa14.06□□□□□ -0.16
HERC1-208ENST00000560462 ZCCHC6Q5VYS8 1495 aaKnown RBP14.04□□□□□ -0.16
HERC1-208ENST00000560462 ATAD2BQ9ULI0 1458 aa13.99□□□□□ -0.17
HERC1-208ENST00000560462 HMGXB3Q12766 1538 aa13.99□□□□□ -0.17
HERC1-208ENST00000560462 MRC2Q9UBG0 1479 aa13.99□□□□□ -0.17
HERC1-208ENST00000560462 WDR62O43379 1518 aa13.97□□□□□ -0.17
HERC1-208ENST00000560462 ARAP1Q96P48 1450 aa13.87□□□□□ -0.19
HERC1-208ENST00000560462 BAZ1BQ9UIG0 1483 aaKnown RBP13.82□□□□□ -0.2
HERC1-208ENST00000560462 CADPSQ9ULU8 1353 aa13.73□□□□□ -0.21
HERC1-208ENST00000560462 CEP164Q9UPV0 1460 aa13.7□□□□□ -0.22
HERC1-208ENST00000560462 SMARCA4P51532 1647 aa13.68□□□□□ -0.22
HERC1-208ENST00000560462 RSF1Q96T23 1441 aaPredicted RBP13.67□□□□□ -0.22
HERC1-208ENST00000560462 KDM4FA0A1W2PPD8 638 aa13.58□□□□□ -0.24
HERC1-208ENST00000560462 FANCD2Q9BXW9 1451 aa13.58□□□□□ -0.24
HERC1-208ENST00000560462 LMTK3Q96Q04 1460 aa13.56□□□□□ -0.24
HERC1-208ENST00000560462 ZNF608Q9ULD9 1512 aaPredicted RBP13.55□□□□□ -0.24
HERC1-208ENST00000560462 PEG3Q9GZU2 1588 aa13.55□□□□□ -0.24
HERC1-208ENST00000560462 FBXO41Q8TF61 875 aa13.55□□□□□ -0.24
HERC1-208ENST00000560462 URB2Q14146 1524 aaKnown RBP13.53□□□□□ -0.24
HERC1-208ENST00000560462 SOCS7O14512 581 aa13.51□□□□□ -0.25
HERC1-208ENST00000560462 CHD1O14646 1710 aa13.49□□□□□ -0.25
HERC1-208ENST00000560462 ERCC6L2Q5T890 1561 aa13.49□□□□□ -0.25
HERC1-208ENST00000560462 FBLN2P98095 1184 aa13.47□□□□□ -0.25
HERC1-208ENST00000560462 IFT140Q96RY7 1462 aa13.47□□□□□ -0.25
HERC1-208ENST00000560462 EIF4G3O43432 1585 aaKnown RBP13.41□□□□□ -0.26
HERC1-208ENST00000560462 HECW2Q9P2P5 1572 aa13.37□□□□□ -0.27
HERC1-208ENST00000560462 ILDR2Q71H61 639 aa13.36□□□□□ -0.27
HERC1-208ENST00000560462 CLASP1Q7Z460 1538 aa13.34□□□□□ -0.27
HERC1-208ENST00000560462 CFTRP13569 1480 aa13.33□□□□□ -0.28
HERC1-208ENST00000560462 GAPVD1Q14C86 1478 aa13.32□□□□□ -0.28
HERC1-208ENST00000560462 AQRO60306 1485 aaKnown RBP eCLIP13.29□□□□□ -0.284e-7■■□□□ 12.8
HERC1-208ENST00000560462 FOXD1Q16676 465 aa13.29□□□□□ -0.28
HERC1-208ENST00000560462 MROH2BQ7Z745 1585 aa13.27□□□□□ -0.29
HERC1-208ENST00000560462 DISP3Q9P2K9 1392 aa13.25□□□□□ -0.29
HERC1-208ENST00000560462 SYNJ1O43426 1573 aa13.24□□□□□ -0.29
HERC1-208ENST00000560462 KIF13AQ9H1H9 1805 aa13.24□□□□□ -0.29
HERC1-208ENST00000560462 SYNJ2O15056 1496 aa13.23□□□□□ -0.29
HERC1-208ENST00000560462 ADGRL1O94910 1474 aa13.2□□□□□ -0.3
HERC1-208ENST00000560462 KDM6BO15054 1643 aa13.2□□□□□ -0.3
HERC1-208ENST00000560462 CHMP7Q8WUX9 453 aaPredicted RBP13.18□□□□□ -0.3
HERC1-208ENST00000560462 TOPBP1Q92547 1522 aa13.18□□□□□ -0.3
HERC1-208ENST00000560462 ADRA2BP18089 450 aa13.16□□□□□ -0.3
HERC1-208ENST00000560462 FAM69CQ0P6D2 419 aa13.14□□□□□ -0.31
HERC1-208ENST00000560462 TARBP1Q13395 1621 aaKnown RBP13.13□□□□□ -0.31
HERC1-208ENST00000560462 SNAPC4Q5SXM2 1469 aa13.12□□□□□ -0.31
HERC1-208ENST00000560462 ABCC8Q09428 1581 aa13.09□□□□□ -0.31
HERC1-208ENST00000560462 ABCC10Q5T3U5 1492 aa13.09□□□□□ -0.31
HERC1-208ENST00000560462 KCNA4P22459 653 aa13.06□□□□□ -0.32
HERC1-208ENST00000560462 TDRD9Q8NDG6 1382 aaKnown RBP13.05□□□□□ -0.32
HERC1-208ENST00000560462 MAGI1Q96QZ7 1491 aaPredicted RBP13.04□□□□□ -0.32
HERC1-208ENST00000560462 DNMBPQ6XZF7 1577 aa13.03□□□□□ -0.32
HERC1-208ENST00000560462 WIZO95785 1651 aa13.02□□□□□ -0.32
HERC1-208ENST00000560462 PRDM2Q13029 1718 aa13.01□□□□□ -0.33
HERC1-208ENST00000560462 PPP6R1Q9UPN7 881 aa13□□□□□ -0.33
HERC1-208ENST00000560462 DIP2BQ9P265 1576 aa12.99□□□□□ -0.33
HERC1-208ENST00000560462 EHMT2Q96KQ7 1210 aa12.99□□□□□ -0.33
HERC1-208ENST00000560462 POLA1P09884 1462 aaPredicted RBP12.98□□□□□ -0.33
HERC1-208ENST00000560462 SPATA31D1Q6ZQQ2 1576 aa12.97□□□□□ -0.33
HERC1-208ENST00000560462 RAD54L2Q9Y4B4 1467 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 384.6 ms