RNA–Protein interactions for RNA: ENST00000560269.1

HMBOX1-213, Transcript of homeobox containing 1, humanhuman

TSL 4

Gene HMBOX1, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMBOX1-213ENST00000560269 NISCHQ9Y2I1 1504 aa32.17■■■□□ 2.74
HMBOX1-213ENST00000560269 CCDC180Q9P1Z9 1646 aa28.38■■■□□ 2.13
HMBOX1-213ENST00000560269 ABCC9O60706 1549 aa27.15■■□□□ 1.94
HMBOX1-213ENST00000560269 ZCCHC6Q5VYS8 1495 aaKnown RBP26.93■■□□□ 1.9
HMBOX1-213ENST00000560269 DCAF1Q9Y4B6 1507 aa26.68■■□□□ 1.86
HMBOX1-213ENST00000560269 MYO15BQ96JP2 1530 aa26.58■■□□□ 1.85
HMBOX1-213ENST00000560269 DCAF8L2P0C7V8 631 aa26.54■■□□□ 1.84
HMBOX1-213ENST00000560269 NACADO15069 1562 aa26.52■■□□□ 1.84
HMBOX1-213ENST00000560269 RB1CC1Q8TDY2 1594 aa26.41■■□□□ 1.82
HMBOX1-213ENST00000560269 SCRIBQ14160 1630 aa25.9■■□□□ 1.74
HMBOX1-213ENST00000560269 UNC13AQ9UPW8 1703 aa25.85■■□□□ 1.73
HMBOX1-213ENST00000560269 SHROOM4Q9ULL8 1493 aa25.7■■□□□ 1.7
HMBOX1-213ENST00000560269 BICRAQ9NZM4 1560 aa25.6■■□□□ 1.69
HMBOX1-213ENST00000560269 PABPN1Q86U42 306 aaKnown RBP eCLIP25.43■■□□□ 1.66
HMBOX1-213ENST00000560269 CECR2Q9BXF3 1484 aa24.98■■□□□ 1.59
HMBOX1-213ENST00000560269 BAZ1AQ9NRL2 1556 aaPredicted RBP24.9■■□□□ 1.58
HMBOX1-213ENST00000560269 EIF4G1Q04637 1599 aaKnown RBP24.86■■□□□ 1.57
HMBOX1-213ENST00000560269 SMARCA4P51532 1647 aa24.85■■□□□ 1.57
HMBOX1-213ENST00000560269 MROH2BQ7Z745 1585 aa24.8■■□□□ 1.56
HMBOX1-213ENST00000560269 RSF1Q96T23 1441 aaPredicted RBP24.72■■□□□ 1.55
HMBOX1-213ENST00000560269 PEG3Q9GZU2 1588 aa24.62■■□□□ 1.53
HMBOX1-213ENST00000560269 CC2D2AQ9P2K1 1620 aa24.61■■□□□ 1.53
HMBOX1-213ENST00000560269 WIZO95785 1651 aa24.56■■□□□ 1.52
HMBOX1-213ENST00000560269 ATAD2BQ9ULI0 1458 aa24.56■■□□□ 1.52
HMBOX1-213ENST00000560269 SMARCA2P51531 1590 aa24.55■■□□□ 1.52
HMBOX1-213ENST00000560269 SUPT5HO00267 1087 aaKnown RBP24.47■■□□□ 1.51
HMBOX1-213ENST00000560269 NCAPD3P42695 1498 aa24.45■■□□□ 1.51
HMBOX1-213ENST00000560269 HMGXB3Q12766 1538 aa24.4■■□□□ 1.5
HMBOX1-213ENST00000560269 DNAJC5BQ9UF47 199 aa24.38■■□□□ 1.49
HMBOX1-213ENST00000560269 BAZ1BQ9UIG0 1483 aaKnown RBP24.37■■□□□ 1.49
HMBOX1-213ENST00000560269 TOP2AP11388 1531 aaKnown RBP24.35■■□□□ 1.49
HMBOX1-213ENST00000560269 CCDC88BA6NC98 1476 aa24.05■■□□□ 1.44
HMBOX1-213ENST00000560269 CADPSQ9ULU8 1353 aa23.76■■□□□ 1.39
HMBOX1-213ENST00000560269 CFTRP13569 1480 aa23.75■■□□□ 1.39
HMBOX1-213ENST00000560269 LAMC3Q9Y6N6 1575 aa23.73■■□□□ 1.39
HMBOX1-213ENST00000560269 PRDM2Q13029 1718 aa23.67■■□□□ 1.38
HMBOX1-213ENST00000560269 NESP48681 1621 aa23.67■■□□□ 1.38
HMBOX1-213ENST00000560269 PDS5BQ9NTI5 1447 aa23.51■■□□□ 1.35
HMBOX1-213ENST00000560269 FANCD2Q9BXW9 1451 aa23.49■■□□□ 1.35
HMBOX1-213ENST00000560269 KIF21AQ7Z4S6 1674 aa23.44■■□□□ 1.34
HMBOX1-213ENST00000560269 CEP164Q9UPV0 1460 aa23.4■■□□□ 1.34
HMBOX1-213ENST00000560269 ABCC8Q09428 1581 aa23.33■■□□□ 1.33
HMBOX1-213ENST00000560269 ERCC6Q03468 1493 aa23.33■■□□□ 1.33
HMBOX1-213ENST00000560269 WRNQ14191 1432 aaPredicted RBP eCLIP23.28■■□□□ 1.32
HMBOX1-213ENST00000560269 MRC2Q9UBG0 1479 aa23.25■■□□□ 1.31
HMBOX1-213ENST00000560269 CUX1P39880 1505 aa23.23■■□□□ 1.31
HMBOX1-213ENST00000560269 URB2Q14146 1524 aaKnown RBP23.23■■□□□ 1.31
HMBOX1-213ENST00000560269 THOC2Q8NI27 1593 aaKnown RBP23.23■■□□□ 1.31
HMBOX1-213ENST00000560269 CHIC1Q5VXU3 224 aa23.22■■□□□ 1.31
HMBOX1-213ENST00000560269 SYNJ1O43426 1573 aa23.22■■□□□ 1.31
HMBOX1-213ENST00000560269 DNMBPQ6XZF7 1577 aa23.22■■□□□ 1.31
HMBOX1-213ENST00000560269 BIVM-ERCC5R4GMW8 1640 aa23.22■■□□□ 1.31
HMBOX1-213ENST00000560269 TOP2BQ02880 1626 aa23.2■■□□□ 1.3
HMBOX1-213ENST00000560269 TOPBP1Q92547 1522 aa23.18■■□□□ 1.3
HMBOX1-213ENST00000560269 WDR62O43379 1518 aa23.17■■□□□ 1.3
HMBOX1-213ENST00000560269 TRIM41Q8WV44 630 aa23.1■■□□□ 1.29
HMBOX1-213ENST00000560269 FGD5Q6ZNL6 1462 aa23.05■■□□□ 1.28
HMBOX1-213ENST00000560269 POLA1P09884 1462 aaPredicted RBP23.03■■□□□ 1.28
HMBOX1-213ENST00000560269 CUX2O14529 1486 aa22.95■■□□□ 1.26
HMBOX1-213ENST00000560269 SOGA1O94964 1423 aa22.92■■□□□ 1.26
HMBOX1-213ENST00000560269 TARBP1Q13395 1621 aaKnown RBP22.92■■□□□ 1.26
HMBOX1-213ENST00000560269 RAD54L2Q9Y4B4 1467 aa22.91■■□□□ 1.26
HMBOX1-213ENST00000560269 IFT140Q96RY7 1462 aa22.9■■□□□ 1.26
HMBOX1-213ENST00000560269 WDR97A6NE52 1622 aa22.88■■□□□ 1.25
HMBOX1-213ENST00000560269 ABCA10Q8WWZ4 1543 aa22.87■■□□□ 1.25
HMBOX1-213ENST00000560269 ABCA5Q8WWZ7 1642 aa22.75■■□□□ 1.23
HMBOX1-213ENST00000560269 KIF27Q86VH2 1401 aa22.74■■□□□ 1.23
HMBOX1-213ENST00000560269 ZNF608Q9ULD9 1512 aaPredicted RBP22.73■■□□□ 1.23
HMBOX1-213ENST00000560269 RUSC2Q8N2Y8 1516 aa22.72■■□□□ 1.23
HMBOX1-213ENST00000560269 EEA1Q15075 1411 aa22.72■■□□□ 1.23
HMBOX1-213ENST00000560269 TDRD9Q8NDG6 1382 aaKnown RBP22.71■■□□□ 1.23
HMBOX1-213ENST00000560269 EIF4G3O43432 1585 aaKnown RBP22.69■■□□□ 1.22
HMBOX1-213ENST00000560269 GAPVD1Q14C86 1478 aa22.68■■□□□ 1.22
HMBOX1-213ENST00000560269 AQRO60306 1485 aaKnown RBP eCLIP22.66■■□□□ 1.22
HMBOX1-213ENST00000560269 PBRM1Q86U86 1689 aa22.63■■□□□ 1.21
HMBOX1-213ENST00000560269 ERICH3Q5RHP9 1530 aa22.62■■□□□ 1.21
HMBOX1-213ENST00000560269 GRIN2BQ13224 1484 aa22.6■■□□□ 1.21
HMBOX1-213ENST00000560269 IGF1RP08069 1367 aa22.59■■□□□ 1.21
HMBOX1-213ENST00000560269 FAM9AQ8IZU1 332 aaPredicted RBP22.58■■□□□ 1.21
HMBOX1-213ENST00000560269 CSRNP3Q8WYN3 585 aa22.57■■□□□ 1.2
HMBOX1-213ENST00000560269 CUL7Q14999 1698 aa22.53■■□□□ 1.2
HMBOX1-213ENST00000560269 MAGI1Q96QZ7 1491 aaPredicted RBP22.49■■□□□ 1.19
HMBOX1-213ENST00000560269 SNAPC4Q5SXM2 1469 aa22.48■■□□□ 1.19
HMBOX1-213ENST00000560269 PRXQ9BXM0 1461 aa22.48■■□□□ 1.19
HMBOX1-213ENST00000560269 ADAMTS12P58397 1594 aa22.47■■□□□ 1.19
HMBOX1-213ENST00000560269 CARMIL1Q5VZK9 1371 aa22.46■■□□□ 1.19
HMBOX1-213ENST00000560269 KIF21BO75037 1637 aa22.46■■□□□ 1.19
HMBOX1-213ENST00000560269 FHAD1B1AJZ9 1412 aa22.44■■□□□ 1.18
HMBOX1-213ENST00000560269 RAPGEF2Q9Y4G8 1499 aa22.41■■□□□ 1.18
HMBOX1-213ENST00000560269 SYNJ2O15056 1496 aa22.39■■□□□ 1.17
HMBOX1-213ENST00000560269 GOLGA3Q08378 1498 aa22.34■■□□□ 1.17
HMBOX1-213ENST00000560269 GRIN2AQ12879 1464 aa22.31■■□□□ 1.16
HMBOX1-213ENST00000560269 CHD1O14646 1710 aa22.3■■□□□ 1.16
HMBOX1-213ENST00000560269 CHMP7Q8WUX9 453 aaPredicted RBP22.29■■□□□ 1.16
HMBOX1-213ENST00000560269 LOC105371045A0A1W2PR82 267 aa22.24■■□□□ 1.15
HMBOX1-213ENST00000560269 FBLN2P98095 1184 aa22.23■■□□□ 1.15
HMBOX1-213ENST00000560269 EHMT2Q96KQ7 1210 aa22.21■■□□□ 1.15
HMBOX1-213ENST00000560269 NUP160Q12769 1436 aa22.2■■□□□ 1.14
HMBOX1-213ENST00000560269 CTTNBP2Q8WZ74 1663 aa22.2■■□□□ 1.14
HMBOX1-213ENST00000560269 CEP170Q5SW79 1584 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms