RNA–Protein interactions for RNA: ENST00000559831.5

TPM1-221, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-221ENST00000559831 NISCHQ9Y2I1 1504 aa24.4■■□□□ 1.5
TPM1-221ENST00000559831 CCDC180Q9P1Z9 1646 aa21.51■■□□□ 1.03
TPM1-221ENST00000559831 ABCC9O60706 1549 aa20.63■□□□□ 0.89
TPM1-221ENST00000559831 ZCCHC6Q5VYS8 1495 aaKnown RBP20.43■□□□□ 0.86
TPM1-221ENST00000559831 DCAF8L2P0C7V8 631 aa20.28■□□□□ 0.84
TPM1-221ENST00000559831 DCAF1Q9Y4B6 1507 aa20.17■□□□□ 0.82
TPM1-221ENST00000559831 NACADO15069 1562 aa20.08■□□□□ 0.81
TPM1-221ENST00000559831 MYO15BQ96JP2 1530 aa20.04■□□□□ 0.8
TPM1-221ENST00000559831 RB1CC1Q8TDY2 1594 aa20.02■□□□□ 0.8
TPM1-221ENST00000559831 SCRIBQ14160 1630 aa19.73■□□□□ 0.75
TPM1-221ENST00000559831 SHROOM4Q9ULL8 1493 aa19.67■□□□□ 0.74
TPM1-221ENST00000559831 UNC13AQ9UPW8 1703 aa19.66■□□□□ 0.74
TPM1-221ENST00000559831 BICRAQ9NZM4 1560 aa19.39■□□□□ 0.69
TPM1-221ENST00000559831 PABPN1Q86U42 306 aaKnown RBP eCLIP19.35■□□□□ 0.69
TPM1-221ENST00000559831 CECR2Q9BXF3 1484 aa18.97■□□□□ 0.63
TPM1-221ENST00000559831 BAZ1AQ9NRL2 1556 aaPredicted RBP18.89■□□□□ 0.61
TPM1-221ENST00000559831 SMARCA4P51532 1647 aa18.87■□□□□ 0.61
TPM1-221ENST00000559831 EIF4G1Q04637 1599 aaKnown RBP18.85■□□□□ 0.61
TPM1-221ENST00000559831 MROH2BQ7Z745 1585 aa18.84■□□□□ 0.61
TPM1-221ENST00000559831 RSF1Q96T23 1441 aaPredicted RBP18.76■□□□□ 0.59
TPM1-221ENST00000559831 SUPT5HO00267 1087 aaKnown RBP18.73■□□□□ 0.59
TPM1-221ENST00000559831 WIZO95785 1651 aa18.71■□□□□ 0.59
TPM1-221ENST00000559831 CC2D2AQ9P2K1 1620 aa18.67■□□□□ 0.58
TPM1-221ENST00000559831 SMARCA2P51531 1590 aa18.62■□□□□ 0.57
TPM1-221ENST00000559831 PEG3Q9GZU2 1588 aa18.62■□□□□ 0.57
TPM1-221ENST00000559831 ATAD2BQ9ULI0 1458 aa18.61■□□□□ 0.57
TPM1-221ENST00000559831 BAZ1BQ9UIG0 1483 aaKnown RBP18.52■□□□□ 0.55
TPM1-221ENST00000559831 TOP2AP11388 1531 aaKnown RBP18.49■□□□□ 0.55
TPM1-221ENST00000559831 NCAPD3P42695 1498 aa18.49■□□□□ 0.55
TPM1-221ENST00000559831 HMGXB3Q12766 1538 aa18.48■□□□□ 0.55
TPM1-221ENST00000559831 DNAJC5BQ9UF47 199 aa18.44■□□□□ 0.54
TPM1-221ENST00000559831 CCDC88BA6NC98 1476 aa18.26■□□□□ 0.51
TPM1-221ENST00000559831 PRDM2Q13029 1718 aa18.02■□□□□ 0.48
TPM1-221ENST00000559831 CADPSQ9ULU8 1353 aa17.99■□□□□ 0.47
TPM1-221ENST00000559831 CFTRP13569 1480 aa17.99■□□□□ 0.47
TPM1-221ENST00000559831 NESP48681 1621 aa17.98■□□□□ 0.47
TPM1-221ENST00000559831 LAMC3Q9Y6N6 1575 aa17.97■□□□□ 0.47
TPM1-221ENST00000559831 KIF21AQ7Z4S6 1674 aa17.84■□□□□ 0.45
TPM1-221ENST00000559831 FANCD2Q9BXW9 1451 aa17.82■□□□□ 0.44
TPM1-221ENST00000559831 PDS5BQ9NTI5 1447 aa17.81■□□□□ 0.44
TPM1-221ENST00000559831 ABCC8Q09428 1581 aa17.8■□□□□ 0.44
TPM1-221ENST00000559831 CEP164Q9UPV0 1460 aa17.77■□□□□ 0.44
TPM1-221ENST00000559831 ERCC6Q03468 1493 aa17.75■□□□□ 0.43
TPM1-221ENST00000559831 CHIC1Q5VXU3 224 aa17.7■□□□□ 0.42
TPM1-221ENST00000559831 WRNQ14191 1432 aaPredicted RBP eCLIP17.7■□□□□ 0.42
TPM1-221ENST00000559831 SYNJ1O43426 1573 aa17.67■□□□□ 0.42
TPM1-221ENST00000559831 CUX1P39880 1505 aa17.65■□□□□ 0.42
TPM1-221ENST00000559831 BIVM-ERCC5R4GMW8 1640 aa17.64■□□□□ 0.41
TPM1-221ENST00000559831 MRC2Q9UBG0 1479 aa17.63■□□□□ 0.41
TPM1-221ENST00000559831 DNMBPQ6XZF7 1577 aa17.63■□□□□ 0.41
TPM1-221ENST00000559831 TRIM41Q8WV44 630 aa17.63■□□□□ 0.41
TPM1-221ENST00000559831 URB2Q14146 1524 aaKnown RBP17.62■□□□□ 0.41
TPM1-221ENST00000559831 TOP2BQ02880 1626 aa17.62■□□□□ 0.41
TPM1-221ENST00000559831 THOC2Q8NI27 1593 aaKnown RBP17.61■□□□□ 0.41
TPM1-221ENST00000559831 TOPBP1Q92547 1522 aa17.6■□□□□ 0.41
TPM1-221ENST00000559831 WDR62O43379 1518 aa17.56■□□□□ 0.4
TPM1-221ENST00000559831 FGD5Q6ZNL6 1462 aa17.52■□□□□ 0.4
TPM1-221ENST00000559831 POLA1P09884 1462 aaPredicted RBP17.47■□□□□ 0.39
TPM1-221ENST00000559831 RAD54L2Q9Y4B4 1467 aa17.42■□□□□ 0.38
TPM1-221ENST00000559831 SOGA1O94964 1423 aa17.4■□□□□ 0.38
TPM1-221ENST00000559831 WDR97A6NE52 1622 aa17.39■□□□□ 0.37
TPM1-221ENST00000559831 CUX2O14529 1486 aa17.38■□□□□ 0.37
TPM1-221ENST00000559831 TARBP1Q13395 1621 aaKnown RBP17.37■□□□□ 0.37
TPM1-221ENST00000559831 IFT140Q96RY7 1462 aa17.35■□□□□ 0.37
TPM1-221ENST00000559831 ABCA10Q8WWZ4 1543 aa17.33■□□□□ 0.37
TPM1-221ENST00000559831 RUSC2Q8N2Y8 1516 aa17.31■□□□□ 0.36
TPM1-221ENST00000559831 FAM9AQ8IZU1 332 aaPredicted RBP17.31■□□□□ 0.36
TPM1-221ENST00000559831 KIF27Q86VH2 1401 aa17.29■□□□□ 0.36
TPM1-221ENST00000559831 ABCA5Q8WWZ7 1642 aa17.26■□□□□ 0.35
TPM1-221ENST00000559831 TDRD9Q8NDG6 1382 aaKnown RBP17.26■□□□□ 0.35
TPM1-221ENST00000559831 ZNF608Q9ULD9 1512 aaPredicted RBP17.26■□□□□ 0.35
TPM1-221ENST00000559831 EIF4G3O43432 1585 aaKnown RBP17.24■□□□□ 0.35
TPM1-221ENST00000559831 EEA1Q15075 1411 aa17.24■□□□□ 0.35
TPM1-221ENST00000559831 PBRM1Q86U86 1689 aa17.24■□□□□ 0.35
TPM1-221ENST00000559831 AQRO60306 1485 aaKnown RBP eCLIP17.22■□□□□ 0.351e-12■■■■□ 23
TPM1-221ENST00000559831 GAPVD1Q14C86 1478 aa17.22■□□□□ 0.35
TPM1-221ENST00000559831 CSRNP3Q8WYN3 585 aa17.17■□□□□ 0.34
TPM1-221ENST00000559831 GRIN2BQ13224 1484 aa17.14■□□□□ 0.33
TPM1-221ENST00000559831 ERICH3Q5RHP9 1530 aa17.14■□□□□ 0.33
TPM1-221ENST00000559831 IGF1RP08069 1367 aa17.13■□□□□ 0.33
TPM1-221ENST00000559831 CUL7Q14999 1698 aa17.12■□□□□ 0.33
TPM1-221ENST00000559831 EHMT2Q96KQ7 1210 aa17.11■□□□□ 0.33
TPM1-221ENST00000559831 SNAPC4Q5SXM2 1469 aa17.09■□□□□ 0.33
TPM1-221ENST00000559831 KIF21BO75037 1637 aa17.08■□□□□ 0.32
TPM1-221ENST00000559831 ADAMTS12P58397 1594 aa17.07■□□□□ 0.32
TPM1-221ENST00000559831 CARMIL1Q5VZK9 1371 aa17.06■□□□□ 0.32
TPM1-221ENST00000559831 PRXQ9BXM0 1461 aa17.05■□□□□ 0.32
TPM1-221ENST00000559831 MAGI1Q96QZ7 1491 aaPredicted RBP17.04■□□□□ 0.32
TPM1-221ENST00000559831 GOLGA3Q08378 1498 aa17.02■□□□□ 0.32
TPM1-221ENST00000559831 RAPGEF2Q9Y4G8 1499 aa17.02■□□□□ 0.32
TPM1-221ENST00000559831 LOC105371045A0A1W2PR82 267 aa17.02■□□□□ 0.32
TPM1-221ENST00000559831 FHAD1B1AJZ9 1412 aa17.02■□□□□ 0.31
TPM1-221ENST00000559831 CHD1O14646 1710 aa16.99■□□□□ 0.31
TPM1-221ENST00000559831 SYNJ2O15056 1496 aa16.98■□□□□ 0.31
TPM1-221ENST00000559831 FBLN2P98095 1184 aa16.96■□□□□ 0.31
TPM1-221ENST00000559831 UBTFP17480 764 aaKnown RBP16.95■□□□□ 0.3
TPM1-221ENST00000559831 CHMP7Q8WUX9 453 aaPredicted RBP16.94■□□□□ 0.3
TPM1-221ENST00000559831 GRIN2AQ12879 1464 aa16.93■□□□□ 0.3
TPM1-221ENST00000559831 CTTNBP2Q8WZ74 1663 aa16.92■□□□□ 0.3
TPM1-221ENST00000559831 TNIKQ9UKE5 1360 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms