RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 NISCHQ9Y2I1 1504 aa33.25■■■□□ 2.91
TPM1-220ENST00000559556 CCDC180Q9P1Z9 1646 aa30.09■■■□□ 2.41
TPM1-220ENST00000559556 ABCC9O60706 1549 aa29.81■■■□□ 2.36
TPM1-220ENST00000559556 RB1CC1Q8TDY2 1594 aa28.51■■■□□ 2.15
TPM1-220ENST00000559556 NACADO15069 1562 aa28.29■■■□□ 2.12
TPM1-220ENST00000559556 UNC13AQ9UPW8 1703 aa28.15■■■□□ 2.1
TPM1-220ENST00000559556 MYO15BQ96JP2 1530 aa27.91■■■□□ 2.06
TPM1-220ENST00000559556 DNAJC5BQ9UF47 199 aa27.9■■■□□ 2.06
TPM1-220ENST00000559556 DCAF8L2P0C7V8 631 aa27.77■■■□□ 2.04
TPM1-220ENST00000559556 BICRAQ9NZM4 1560 aa27.71■■■□□ 2.03
TPM1-220ENST00000559556 PABPN1Q86U42 306 aaKnown RBP eCLIP27.61■■■□□ 2.01
TPM1-220ENST00000559556 ZCCHC6Q5VYS8 1495 aaKnown RBP27.57■■■□□ 2
TPM1-220ENST00000559556 DCAF1Q9Y4B6 1507 aa27.53■■■□□ 2
TPM1-220ENST00000559556 SHROOM4Q9ULL8 1493 aa27.33■■□□□ 1.97
TPM1-220ENST00000559556 SCRIBQ14160 1630 aa27.25■■□□□ 1.95
TPM1-220ENST00000559556 CC2D2AQ9P2K1 1620 aa27.08■■□□□ 1.93
TPM1-220ENST00000559556 EIF4G1Q04637 1599 aaKnown RBP26.99■■□□□ 1.91
TPM1-220ENST00000559556 CECR2Q9BXF3 1484 aa26.87■■□□□ 1.89
TPM1-220ENST00000559556 SMARCA4P51532 1647 aa26.04■■□□□ 1.76
TPM1-220ENST00000559556 NCAPD3P42695 1498 aa26.03■■□□□ 1.76
TPM1-220ENST00000559556 SMARCA2P51531 1590 aa25.95■■□□□ 1.75
TPM1-220ENST00000559556 HMGXB3Q12766 1538 aa25.95■■□□□ 1.74
TPM1-220ENST00000559556 ATAD2BQ9ULI0 1458 aa25.94■■□□□ 1.74
TPM1-220ENST00000559556 BAZ1AQ9NRL2 1556 aaPredicted RBP25.85■■□□□ 1.73
TPM1-220ENST00000559556 PEG3Q9GZU2 1588 aa25.81■■□□□ 1.72
TPM1-220ENST00000559556 CUX2O14529 1486 aa25.79■■□□□ 1.72
TPM1-220ENST00000559556 ERCC6Q03468 1493 aa25.75■■□□□ 1.71
TPM1-220ENST00000559556 BAZ1BQ9UIG0 1483 aaKnown RBP25.71■■□□□ 1.71
TPM1-220ENST00000559556 DNAJC5Q9H3Z4 198 aa25.67■■□□□ 1.7
TPM1-220ENST00000559556 NESP48681 1621 aa25.63■■□□□ 1.69
TPM1-220ENST00000559556 MROH2BQ7Z745 1585 aa25.61■■□□□ 1.69
TPM1-220ENST00000559556 LAMC3Q9Y6N6 1575 aa25.57■■□□□ 1.68
TPM1-220ENST00000559556 THOC2Q8NI27 1593 aaKnown RBP25.56■■□□□ 1.68
TPM1-220ENST00000559556 KIF21AQ7Z4S6 1674 aa25.55■■□□□ 1.68
TPM1-220ENST00000559556 WIZO95785 1651 aa25.4■■□□□ 1.66
TPM1-220ENST00000559556 PDS5BQ9NTI5 1447 aa25.27■■□□□ 1.64
TPM1-220ENST00000559556 CADPSQ9ULU8 1353 aa25.18■■□□□ 1.62
TPM1-220ENST00000559556 WDR62O43379 1518 aa25.12■■□□□ 1.61
TPM1-220ENST00000559556 MRC2Q9UBG0 1479 aa25.11■■□□□ 1.61
TPM1-220ENST00000559556 PRDM2Q13029 1718 aa25.11■■□□□ 1.61
TPM1-220ENST00000559556 TOP2AP11388 1531 aaKnown RBP25.03■■□□□ 1.6
TPM1-220ENST00000559556 CEP164Q9UPV0 1460 aa25.01■■□□□ 1.59
TPM1-220ENST00000559556 RSF1Q96T23 1441 aaPredicted RBP24.99■■□□□ 1.59
TPM1-220ENST00000559556 CFTRP13569 1480 aa24.95■■□□□ 1.58
TPM1-220ENST00000559556 FANCD2Q9BXW9 1451 aa24.95■■□□□ 1.58
TPM1-220ENST00000559556 URB2Q14146 1524 aaKnown RBP24.78■■□□□ 1.56
TPM1-220ENST00000559556 CCDC88BA6NC98 1476 aa24.64■■□□□ 1.54
TPM1-220ENST00000559556 TOPBP1Q92547 1522 aa24.51■■□□□ 1.51
TPM1-220ENST00000559556 DNMBPQ6XZF7 1577 aa24.48■■□□□ 1.51
TPM1-220ENST00000559556 IFT140Q96RY7 1462 aa24.48■■□□□ 1.51
TPM1-220ENST00000559556 TRIM41Q8WV44 630 aa24.46■■□□□ 1.51
TPM1-220ENST00000559556 EIF4G3O43432 1585 aaKnown RBP24.46■■□□□ 1.51
TPM1-220ENST00000559556 ABCC8Q09428 1581 aa24.45■■□□□ 1.5
TPM1-220ENST00000559556 ZNF608Q9ULD9 1512 aaPredicted RBP24.43■■□□□ 1.5
TPM1-220ENST00000559556 OSCARQ8IYS5 282 aa24.42■■□□□ 1.5
TPM1-220ENST00000559556 TARBP1Q13395 1621 aaKnown RBP24.4■■□□□ 1.5
TPM1-220ENST00000559556 CHD1O14646 1710 aa24.38■■□□□ 1.49
TPM1-220ENST00000559556 RIMBP3CA6NJZ7 1639 aa24.38■■□□□ 1.49
TPM1-220ENST00000559556 RIMBP3BA6NNM3 1639 aa24.38■■□□□ 1.49
TPM1-220ENST00000559556 RIMBP3Q9UFD9 1639 aa24.38■■□□□ 1.49
TPM1-220ENST00000559556 POLA1P09884 1462 aaPredicted RBP24.25■■□□□ 1.47
TPM1-220ENST00000559556 ARHGEF11O15085 1522 aa24.21■■□□□ 1.47
TPM1-220ENST00000559556 WDR97A6NE52 1622 aa24.19■■□□□ 1.46
TPM1-220ENST00000559556 AQRO60306 1485 aaKnown RBP eCLIP24.16■■□□□ 1.462e-12■■■■□ 23
TPM1-220ENST00000559556 RAD54L2Q9Y4B4 1467 aa24.09■■□□□ 1.45
TPM1-220ENST00000559556 CUX1P39880 1505 aa24.09■■□□□ 1.45
TPM1-220ENST00000559556 FGD5Q6ZNL6 1462 aa24.07■■□□□ 1.44
TPM1-220ENST00000559556 PBRM1Q86U86 1689 aa24.07■■□□□ 1.44
TPM1-220ENST00000559556 SOGA1O94964 1423 aa24.04■■□□□ 1.44
TPM1-220ENST00000559556 SNAPC4Q5SXM2 1469 aa23.98■■□□□ 1.43
TPM1-220ENST00000559556 CLASP1Q7Z460 1538 aa23.97■■□□□ 1.43
TPM1-220ENST00000559556 TDRD9Q8NDG6 1382 aaKnown RBP23.96■■□□□ 1.43
TPM1-220ENST00000559556 ARAP1Q96P48 1450 aa23.95■■□□□ 1.42
TPM1-220ENST00000559556 MAGI1Q96QZ7 1491 aaPredicted RBP23.95■■□□□ 1.42
TPM1-220ENST00000559556 SYNJ1O43426 1573 aa23.93■■□□□ 1.42
TPM1-220ENST00000559556 ABCA5Q8WWZ7 1642 aa23.91■■□□□ 1.42
TPM1-220ENST00000559556 GRIN2BQ13224 1484 aa23.9■■□□□ 1.42
TPM1-220ENST00000559556 FBLN2P98095 1184 aa23.89■■□□□ 1.41
TPM1-220ENST00000559556 SYNJ2O15056 1496 aa23.85■■□□□ 1.41
TPM1-220ENST00000559556 CYB5RLQ6IPT4 315 aa23.83■■□□□ 1.41
TPM1-220ENST00000559556 BIVM-ERCC5R4GMW8 1640 aa23.83■■□□□ 1.41
TPM1-220ENST00000559556 ABCA10Q8WWZ4 1543 aa23.82■■□□□ 1.4
TPM1-220ENST00000559556 GAPVD1Q14C86 1478 aa23.81■■□□□ 1.4
TPM1-220ENST00000559556 TOP2BQ02880 1626 aa23.76■■□□□ 1.39
TPM1-220ENST00000559556 CHMP7Q8WUX9 453 aaPredicted RBP23.74■■□□□ 1.39
TPM1-220ENST00000559556 ADAMTS12P58397 1594 aa23.7■■□□□ 1.38
TPM1-220ENST00000559556 SUPT5HO00267 1087 aaKnown RBP23.68■■□□□ 1.38
TPM1-220ENST00000559556 WRNQ14191 1432 aaPredicted RBP eCLIP23.64■■□□□ 1.37
TPM1-220ENST00000559556 GRIN2AQ12879 1464 aa23.62■■□□□ 1.37
TPM1-220ENST00000559556 CEP170Q5SW79 1584 aa23.61■■□□□ 1.37
TPM1-220ENST00000559556 SHROOM2Q13796 1616 aa23.59■■□□□ 1.37
TPM1-220ENST00000559556 ERICH3Q5RHP9 1530 aa23.56■■□□□ 1.36
TPM1-220ENST00000559556 TRHP20396 242 aaPredicted RBP23.56■■□□□ 1.36
TPM1-220ENST00000559556 ERCC6L2Q5T890 1561 aa23.54■■□□□ 1.36
TPM1-220ENST00000559556 NUP160Q12769 1436 aa23.53■■□□□ 1.36
TPM1-220ENST00000559556 FHAD1B1AJZ9 1412 aa23.48■■□□□ 1.35
TPM1-220ENST00000559556 KIF13AQ9H1H9 1805 aa23.41■■□□□ 1.34
TPM1-220ENST00000559556 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
TPM1-220ENST00000559556 CUL7Q14999 1698 aa23.31■■□□□ 1.32
TPM1-220ENST00000559556 PRG4Q92954 1404 aaPredicted RBP23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms