RNA–Protein interactions for RNA: ENST00000559162.5

AP3S2-209, Transcript of adaptor related protein complex 3 subunit sigma 2, humanhuman

TSL 2

Gene AP3S2, Length 357 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2-209ENST00000559162 NISCHQ9Y2I1 1504 aa25.92■■□□□ 1.74
AP3S2-209ENST00000559162 CCDC180Q9P1Z9 1646 aa23.26■■□□□ 1.31
AP3S2-209ENST00000559162 ABCC9O60706 1549 aa22.96■■□□□ 1.27
AP3S2-209ENST00000559162 RB1CC1Q8TDY2 1594 aa22.02■■□□□ 1.12
AP3S2-209ENST00000559162 NACADO15069 1562 aa21.91■■□□□ 1.1
AP3S2-209ENST00000559162 MYO15BQ96JP2 1530 aa21.71■■□□□ 1.07
AP3S2-209ENST00000559162 DCAF8L2P0C7V8 631 aa21.66■■□□□ 1.06
AP3S2-209ENST00000559162 ZCCHC6Q5VYS8 1495 aaKnown RBP21.55■■□□□ 1.04
AP3S2-209ENST00000559162 DCAF1Q9Y4B6 1507 aa21.49■■□□□ 1.03
AP3S2-209ENST00000559162 UNC13AQ9UPW8 1703 aa21.47■■□□□ 1.03
AP3S2-209ENST00000559162 PABPN1Q86U42 306 aaKnown RBP eCLIP21.34■■□□□ 1.01
AP3S2-209ENST00000559162 BICRAQ9NZM4 1560 aa21.31■■□□□ 1
AP3S2-209ENST00000559162 DNAJC5BQ9UF47 199 aa21.28■■□□□ 1
AP3S2-209ENST00000559162 SHROOM4Q9ULL8 1493 aa21.2■□□□□ 0.98
AP3S2-209ENST00000559162 SCRIBQ14160 1630 aa21.12■□□□□ 0.97
AP3S2-209ENST00000559162 EIF4G1Q04637 1599 aaKnown RBP20.8■□□□□ 0.92
AP3S2-209ENST00000559162 CC2D2AQ9P2K1 1620 aa20.78■□□□□ 0.92
AP3S2-209ENST00000559162 CECR2Q9BXF3 1484 aa20.7■□□□□ 0.9
AP3S2-209ENST00000559162 NCAPD3P42695 1498 aa20.2■□□□□ 0.82
AP3S2-209ENST00000559162 SMARCA4P51532 1647 aa20.2■□□□□ 0.82
AP3S2-209ENST00000559162 SMARCA2P51531 1590 aa20.16■□□□□ 0.82
AP3S2-209ENST00000559162 BAZ1AQ9NRL2 1556 aaPredicted RBP20.15■□□□□ 0.82
AP3S2-209ENST00000559162 ATAD2BQ9ULI0 1458 aa20.14■□□□□ 0.81
AP3S2-209ENST00000559162 HMGXB3Q12766 1538 aa20.12■□□□□ 0.81
AP3S2-209ENST00000559162 PEG3Q9GZU2 1588 aa20.04■□□□□ 0.8
AP3S2-209ENST00000559162 BAZ1BQ9UIG0 1483 aaKnown RBP19.99■□□□□ 0.79
AP3S2-209ENST00000559162 MROH2BQ7Z745 1585 aa19.93■□□□□ 0.78
AP3S2-209ENST00000559162 ERCC6Q03468 1493 aa19.86■□□□□ 0.77
AP3S2-209ENST00000559162 CUX2O14529 1486 aa19.8■□□□□ 0.76
AP3S2-209ENST00000559162 NESP48681 1621 aa19.76■□□□□ 0.75
AP3S2-209ENST00000559162 LAMC3Q9Y6N6 1575 aa19.74■□□□□ 0.75
AP3S2-209ENST00000559162 WIZO95785 1651 aa19.7■□□□□ 0.74
AP3S2-209ENST00000559162 THOC2Q8NI27 1593 aaKnown RBP19.61■□□□□ 0.73
AP3S2-209ENST00000559162 PDS5BQ9NTI5 1447 aa19.6■□□□□ 0.73
AP3S2-209ENST00000559162 RSF1Q96T23 1441 aaPredicted RBP19.59■□□□□ 0.73
AP3S2-209ENST00000559162 CADPSQ9ULU8 1353 aa19.57■□□□□ 0.72
AP3S2-209ENST00000559162 KIF21AQ7Z4S6 1674 aa19.56■□□□□ 0.72
AP3S2-209ENST00000559162 TOP2AP11388 1531 aaKnown RBP19.54■□□□□ 0.72
AP3S2-209ENST00000559162 DNAJC5Q9H3Z4 198 aa19.49■□□□□ 0.71
AP3S2-209ENST00000559162 MRC2Q9UBG0 1479 aa19.43■□□□□ 0.7
AP3S2-209ENST00000559162 CFTRP13569 1480 aa19.41■□□□□ 0.7
AP3S2-209ENST00000559162 WDR62O43379 1518 aa19.4■□□□□ 0.7
AP3S2-209ENST00000559162 CEP164Q9UPV0 1460 aa19.39■□□□□ 0.69
AP3S2-209ENST00000559162 FANCD2Q9BXW9 1451 aa19.35■□□□□ 0.69
AP3S2-209ENST00000559162 PRDM2Q13029 1718 aa19.28■□□□□ 0.68
AP3S2-209ENST00000559162 CCDC88BA6NC98 1476 aa19.24■□□□□ 0.67
AP3S2-209ENST00000559162 URB2Q14146 1524 aaKnown RBP19.17■□□□□ 0.66
AP3S2-209ENST00000559162 ABCC8Q09428 1581 aa19.04■□□□□ 0.64
AP3S2-209ENST00000559162 TOPBP1Q92547 1522 aa19.01■□□□□ 0.63
AP3S2-209ENST00000559162 IFT140Q96RY7 1462 aa19.01■□□□□ 0.63
AP3S2-209ENST00000559162 DNMBPQ6XZF7 1577 aa18.99■□□□□ 0.63
AP3S2-209ENST00000559162 ZNF608Q9ULD9 1512 aaPredicted RBP18.89■□□□□ 0.61
AP3S2-209ENST00000559162 EIF4G3O43432 1585 aaKnown RBP18.86■□□□□ 0.61
AP3S2-209ENST00000559162 OSCARQ8IYS5 282 aa18.84■□□□□ 0.61
AP3S2-209ENST00000559162 POLA1P09884 1462 aaPredicted RBP18.84■□□□□ 0.61
AP3S2-209ENST00000559162 TARBP1Q13395 1621 aaKnown RBP18.83■□□□□ 0.61
AP3S2-209ENST00000559162 SUPT5HO00267 1087 aaKnown RBP18.77■□□□□ 0.6
AP3S2-209ENST00000559162 WDR97A6NE52 1622 aa18.75■□□□□ 0.59
AP3S2-209ENST00000559162 FGD5Q6ZNL6 1462 aa18.74■□□□□ 0.59
AP3S2-209ENST00000559162 CUX1P39880 1505 aa18.73■□□□□ 0.59
AP3S2-209ENST00000559162 AQRO60306 1485 aaKnown RBP eCLIP18.72■□□□□ 0.59
AP3S2-209ENST00000559162 SOGA1O94964 1423 aa18.72■□□□□ 0.59
AP3S2-209ENST00000559162 RAD54L2Q9Y4B4 1467 aa18.71■□□□□ 0.59
AP3S2-209ENST00000559162 TRIM41Q8WV44 630 aa18.67■□□□□ 0.58
AP3S2-209ENST00000559162 CHD1O14646 1710 aa18.66■□□□□ 0.58
AP3S2-209ENST00000559162 TDRD9Q8NDG6 1382 aaKnown RBP18.63■□□□□ 0.57
AP3S2-209ENST00000559162 RIMBP3CA6NJZ7 1639 aa18.61■□□□□ 0.57
AP3S2-209ENST00000559162 RIMBP3BA6NNM3 1639 aa18.61■□□□□ 0.57
AP3S2-209ENST00000559162 RIMBP3Q9UFD9 1639 aa18.61■□□□□ 0.57
AP3S2-209ENST00000559162 MAGI1Q96QZ7 1491 aaPredicted RBP18.59■□□□□ 0.57
AP3S2-209ENST00000559162 ARHGEF11O15085 1522 aa18.59■□□□□ 0.57
AP3S2-209ENST00000559162 GRIN2BQ13224 1484 aa18.58■□□□□ 0.57
AP3S2-209ENST00000559162 SNAPC4Q5SXM2 1469 aa18.58■□□□□ 0.57
AP3S2-209ENST00000559162 ABCA10Q8WWZ4 1543 aa18.56■□□□□ 0.56
AP3S2-209ENST00000559162 FBLN2P98095 1184 aa18.54■□□□□ 0.56
AP3S2-209ENST00000559162 BIVM-ERCC5R4GMW8 1640 aa18.53■□□□□ 0.56
AP3S2-209ENST00000559162 PBRM1Q86U86 1689 aa18.53■□□□□ 0.56
AP3S2-209ENST00000559162 TOP2BQ02880 1626 aa18.52■□□□□ 0.56
AP3S2-209ENST00000559162 ABCA5Q8WWZ7 1642 aa18.52■□□□□ 0.56
AP3S2-209ENST00000559162 SYNJ2O15056 1496 aa18.52■□□□□ 0.55
AP3S2-209ENST00000559162 GAPVD1Q14C86 1478 aa18.52■□□□□ 0.55
AP3S2-209ENST00000559162 WRNQ14191 1432 aaPredicted RBP eCLIP18.51■□□□□ 0.55
AP3S2-209ENST00000559162 SYNJ1O43426 1573 aa18.5■□□□□ 0.55
AP3S2-209ENST00000559162 CHMP7Q8WUX9 453 aaPredicted RBP18.47■□□□□ 0.55
AP3S2-209ENST00000559162 CLASP1Q7Z460 1538 aa18.47■□□□□ 0.55
AP3S2-209ENST00000559162 ARAP1Q96P48 1450 aa18.4■□□□□ 0.54
AP3S2-209ENST00000559162 ADAMTS12P58397 1594 aa18.38■□□□□ 0.53
AP3S2-209ENST00000559162 CYB5RLQ6IPT4 315 aa18.35■□□□□ 0.53
AP3S2-209ENST00000559162 ERICH3Q5RHP9 1530 aa18.34■□□□□ 0.53
AP3S2-209ENST00000559162 GRIN2AQ12879 1464 aa18.34■□□□□ 0.53
AP3S2-209ENST00000559162 FHAD1B1AJZ9 1412 aa18.31■□□□□ 0.52
AP3S2-209ENST00000559162 NUP160Q12769 1436 aa18.28■□□□□ 0.52
AP3S2-209ENST00000559162 CEP170Q5SW79 1584 aa18.25■□□□□ 0.51
AP3S2-209ENST00000559162 SHROOM2Q13796 1616 aa18.2■□□□□ 0.5
AP3S2-209ENST00000559162 KIF27Q86VH2 1401 aa18.16■□□□□ 0.5
AP3S2-209ENST00000559162 CUL7Q14999 1698 aa18.14■□□□□ 0.49
AP3S2-209ENST00000559162 RUSC2Q8N2Y8 1516 aa18.13■□□□□ 0.49
AP3S2-209ENST00000559162 ERCC6L2Q5T890 1561 aa18.13■□□□□ 0.49
AP3S2-209ENST00000559162 TRHP20396 242 aaPredicted RBP18.1■□□□□ 0.49
AP3S2-209ENST00000559162 IGF1RP08069 1367 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms