RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 AEBP2Q6ZN18 517 aaPredicted RBP27.53■■■□□ 2
USP3-207ENST00000558218 CHIC1Q5VXU3 224 aa26.45■■□□□ 1.82
USP3-207ENST00000558218 NISCHQ9Y2I1 1504 aa24.86■■□□□ 1.57
USP3-207ENST00000558218 PHF23Q9BUL5 403 aaPredicted RBP23.32■■□□□ 1.32
USP3-207ENST00000558218 SENP3Q9H4L4 574 aaPredicted RBP23.25■■□□□ 1.31
USP3-207ENST00000558218 CCDC180Q9P1Z9 1646 aa22.21■■□□□ 1.15
USP3-207ENST00000558218 ABCC9O60706 1549 aa21.91■■□□□ 1.1
USP3-207ENST00000558218 FOXD1Q16676 465 aa21.74■■□□□ 1.07
USP3-207ENST00000558218 PLPPR3Q6T4P5 718 aa21.3■■□□□ 1
USP3-207ENST00000558218 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
USP3-207ENST00000558218 NACADO15069 1562 aa20.99■□□□□ 0.95
USP3-207ENST00000558218 DCAF8L2P0C7V8 631 aa20.87■□□□□ 0.93
USP3-207ENST00000558218 MYO15BQ96JP2 1530 aa20.84■□□□□ 0.93
USP3-207ENST00000558218 PPP6R1Q9UPN7 881 aa20.73■□□□□ 0.91
USP3-207ENST00000558218 ADRA2BP18089 450 aa20.71■□□□□ 0.91
USP3-207ENST00000558218 ZCCHC6Q5VYS8 1495 aaKnown RBP20.63■□□□□ 0.89
USP3-207ENST00000558218 DCAF1Q9Y4B6 1507 aa20.63■□□□□ 0.89
USP3-207ENST00000558218 UNC13AQ9UPW8 1703 aa20.47■□□□□ 0.87
USP3-207ENST00000558218 PABPN1Q86U42 306 aaKnown RBP eCLIP20.46■□□□□ 0.87
USP3-207ENST00000558218 PIAS4Q8N2W9 510 aaPredicted RBP20.43■□□□□ 0.86
USP3-207ENST00000558218 DNAJC5BQ9UF47 199 aa20.38■□□□□ 0.85
USP3-207ENST00000558218 BICRAQ9NZM4 1560 aa20.36■□□□□ 0.85
USP3-207ENST00000558218 SHROOM4Q9ULL8 1493 aa20.24■□□□□ 0.83
USP3-207ENST00000558218 SCRIBQ14160 1630 aa20.14■□□□□ 0.81
USP3-207ENST00000558218 POTEDQ86YR6 584 aa20.09■□□□□ 0.81
USP3-207ENST00000558218 MSH5O43196 834 aa20.04■□□□□ 0.8
USP3-207ENST00000558218 EIF4G1Q04637 1599 aaKnown RBP19.86■□□□□ 0.77
USP3-207ENST00000558218 CC2D2AQ9P2K1 1620 aa19.83■□□□□ 0.76
USP3-207ENST00000558218 CECR2Q9BXF3 1484 aa19.76■□□□□ 0.75
USP3-207ENST00000558218 NCAPD3P42695 1498 aa19.39■□□□□ 0.69
USP3-207ENST00000558218 ATAD2BQ9ULI0 1458 aa19.31■□□□□ 0.68
USP3-207ENST00000558218 SMARCA4P51532 1647 aa19.31■□□□□ 0.68
USP3-207ENST00000558218 BAZ1AQ9NRL2 1556 aaPredicted RBP19.3■□□□□ 0.68
USP3-207ENST00000558218 SMARCA2P51531 1590 aa19.29■□□□□ 0.68
USP3-207ENST00000558218 HMGXB3Q12766 1538 aa19.21■□□□□ 0.67
USP3-207ENST00000558218 PEG3Q9GZU2 1588 aa19.19■□□□□ 0.66
USP3-207ENST00000558218 MROH2BQ7Z745 1585 aa19.11■□□□□ 0.65
USP3-207ENST00000558218 BAZ1BQ9UIG0 1483 aaKnown RBP19.11■□□□□ 0.65
USP3-207ENST00000558218 DNAJC5Q9H3Z4 198 aa18.96■□□□□ 0.63
USP3-207ENST00000558218 ERCC6Q03468 1493 aa18.93■□□□□ 0.62
USP3-207ENST00000558218 MAPK8IP2Q13387 824 aaPredicted RBP18.93■□□□□ 0.62
USP3-207ENST00000558218 CUX2O14529 1486 aa18.88■□□□□ 0.61
USP3-207ENST00000558218 LAMC3Q9Y6N6 1575 aa18.88■□□□□ 0.61
USP3-207ENST00000558218 NESP48681 1621 aa18.87■□□□□ 0.61
USP3-207ENST00000558218 WIZO95785 1651 aa18.86■□□□□ 0.61
USP3-207ENST00000558218 RSF1Q96T23 1441 aaPredicted RBP18.85■□□□□ 0.61
USP3-207ENST00000558218 PPP4R3CPQ6ZMV5 832 aa18.82■□□□□ 0.6
USP3-207ENST00000558218 CADPSQ9ULU8 1353 aa18.81■□□□□ 0.6
USP3-207ENST00000558218 PDS5BQ9NTI5 1447 aa18.8■□□□□ 0.6
USP3-207ENST00000558218 SCAF1Q9H7N4 1312 aaKnown RBP18.74■□□□□ 0.59
USP3-207ENST00000558218 TOP2AP11388 1531 aaKnown RBP18.69■□□□□ 0.58
USP3-207ENST00000558218 THOC2Q8NI27 1593 aaKnown RBP18.64■□□□□ 0.58
USP3-207ENST00000558218 KIF21AQ7Z4S6 1674 aa18.63■□□□□ 0.57
USP3-207ENST00000558218 CFTRP13569 1480 aa18.62■□□□□ 0.57
USP3-207ENST00000558218 MRC2Q9UBG0 1479 aa18.56■□□□□ 0.56
USP3-207ENST00000558218 FANCD2Q9BXW9 1451 aa18.52■□□□□ 0.56
USP3-207ENST00000558218 CEP164Q9UPV0 1460 aa18.52■□□□□ 0.56
USP3-207ENST00000558218 DMRT2Q9Y5R5 561 aa18.52■□□□□ 0.56
USP3-207ENST00000558218 CCDC88BA6NC98 1476 aa18.5■□□□□ 0.55
USP3-207ENST00000558218 WDR62O43379 1518 aa18.49■□□□□ 0.55
USP3-207ENST00000558218 PRDM2Q13029 1718 aa18.39■□□□□ 0.53
USP3-207ENST00000558218 URB2Q14146 1524 aaKnown RBP18.33■□□□□ 0.52
USP3-207ENST00000558218 ABCC8Q09428 1581 aa18.29■□□□□ 0.52
USP3-207ENST00000558218 CNKSR2Q8WXI2 1034 aa18.28■□□□□ 0.52
USP3-207ENST00000558218 TOPBP1Q92547 1522 aa18.2■□□□□ 0.5
USP3-207ENST00000558218 IFT140Q96RY7 1462 aa18.19■□□□□ 0.5
USP3-207ENST00000558218 DNMBPQ6XZF7 1577 aa18.16■□□□□ 0.5
USP3-207ENST00000558218 SUPT5HO00267 1087 aaKnown RBP18.15■□□□□ 0.5
USP3-207ENST00000558218 NCBP3Q53F19 620 aaKnown RBP18.12■□□□□ 0.49
USP3-207ENST00000558218 OSCARQ8IYS5 282 aa18.12■□□□□ 0.49
USP3-207ENST00000558218 KCNA4P22459 653 aa18.08■□□□□ 0.48
USP3-207ENST00000558218 ZNF608Q9ULD9 1512 aaPredicted RBP18.05■□□□□ 0.48
USP3-207ENST00000558218 POLA1P09884 1462 aaPredicted RBP18.01■□□□□ 0.47
USP3-207ENST00000558218 TARBP1Q13395 1621 aaKnown RBP18.01■□□□□ 0.47
USP3-207ENST00000558218 SOGA1O94964 1423 aa17.99■□□□□ 0.47
USP3-207ENST00000558218 HOXD11P31277 338 aaPredicted RBP17.99■□□□□ 0.47
USP3-207ENST00000558218 RNF216Q9NWF9 866 aaPredicted RBP17.98■□□□□ 0.47
USP3-207ENST00000558218 NPM3O75607 178 aaKnown RBP17.97■□□□□ 0.47
USP3-207ENST00000558218 DCAF8L1A6NGE4 600 aa17.96■□□□□ 0.47
USP3-207ENST00000558218 EIF4G3O43432 1585 aaKnown RBP17.95■□□□□ 0.46
USP3-207ENST00000558218 AQRO60306 1485 aaKnown RBP eCLIP17.95■□□□□ 0.468e-7■■■■■ 28.7
USP3-207ENST00000558218 CUX1P39880 1505 aa17.94■□□□□ 0.46
USP3-207ENST00000558218 FGD5Q6ZNL6 1462 aa17.93■□□□□ 0.46
USP3-207ENST00000558218 WDR97A6NE52 1622 aa17.92■□□□□ 0.46
USP3-207ENST00000558218 RAD54L2Q9Y4B4 1467 aa17.92■□□□□ 0.46
USP3-207ENST00000558218 TDRD9Q8NDG6 1382 aaKnown RBP17.89■□□□□ 0.45
USP3-207ENST00000558218 FBLN2P98095 1184 aa17.8■□□□□ 0.44
USP3-207ENST00000558218 TRIM41Q8WV44 630 aa17.8■□□□□ 0.44
USP3-207ENST00000558218 GRIN2BQ13224 1484 aa17.8■□□□□ 0.44
USP3-207ENST00000558218 ABCA10Q8WWZ4 1543 aa17.79■□□□□ 0.44
USP3-207ENST00000558218 MAGI1Q96QZ7 1491 aaPredicted RBP17.79■□□□□ 0.44
USP3-207ENST00000558218 WRNQ14191 1432 aaPredicted RBP eCLIP17.79■□□□□ 0.44
USP3-207ENST00000558218 CHMP7Q8WUX9 453 aaPredicted RBP17.77■□□□□ 0.44
USP3-207ENST00000558218 GAPVD1Q14C86 1478 aa17.76■□□□□ 0.43
USP3-207ENST00000558218 CHD1O14646 1710 aa17.76■□□□□ 0.43
USP3-207ENST00000558218 TOP2BQ02880 1626 aa17.75■□□□□ 0.43
USP3-207ENST00000558218 SNAPC4Q5SXM2 1469 aa17.75■□□□□ 0.43
USP3-207ENST00000558218 BIVM-ERCC5R4GMW8 1640 aa17.73■□□□□ 0.43
USP3-207ENST00000558218 SYNJ2O15056 1496 aa17.71■□□□□ 0.43
USP3-207ENST00000558218 RIMBP3CA6NJZ7 1639 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms