RNA–Protein interactions for RNA: ENST00000558059.5

SNRPA1-206, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-206ENST00000558059 AEBP2Q6ZN18 517 aaPredicted RBP22.69■■□□□ 1.22
SNRPA1-206ENST00000558059 NISCHQ9Y2I1 1504 aa21.66■■□□□ 1.06
SNRPA1-206ENST00000558059 CHIC1Q5VXU3 224 aa21.26■□□□□ 0.99
SNRPA1-206ENST00000558059 SENP3Q9H4L4 574 aaPredicted RBP19.36■□□□□ 0.69
SNRPA1-206ENST00000558059 CCDC180Q9P1Z9 1646 aa19.31■□□□□ 0.68
SNRPA1-206ENST00000558059 ABCC9O60706 1549 aa19.07■□□□□ 0.64
SNRPA1-206ENST00000558059 PHF23Q9BUL5 403 aaPredicted RBP19.04■□□□□ 0.64
SNRPA1-206ENST00000558059 RB1CC1Q8TDY2 1594 aa18.25■□□□□ 0.51
SNRPA1-206ENST00000558059 NACADO15069 1562 aa18.2■□□□□ 0.5
SNRPA1-206ENST00000558059 DCAF8L2P0C7V8 631 aa18.16■□□□□ 0.5
SNRPA1-206ENST00000558059 FOXD1Q16676 465 aa18.08■□□□□ 0.48
SNRPA1-206ENST00000558059 MYO15BQ96JP2 1530 aa18.03■□□□□ 0.48
SNRPA1-206ENST00000558059 ZCCHC6Q5VYS8 1495 aaKnown RBP17.99■□□□□ 0.47
SNRPA1-206ENST00000558059 DCAF1Q9Y4B6 1507 aa17.9■□□□□ 0.46
SNRPA1-206ENST00000558059 UNC13AQ9UPW8 1703 aa17.89■□□□□ 0.45
SNRPA1-206ENST00000558059 PABPN1Q86U42 306 aaKnown RBP eCLIP17.81■□□□□ 0.44
SNRPA1-206ENST00000558059 BICRAQ9NZM4 1560 aa17.75■□□□□ 0.43
SNRPA1-206ENST00000558059 DNAJC5BQ9UF47 199 aa17.72■□□□□ 0.43
SNRPA1-206ENST00000558059 SCRIBQ14160 1630 aa17.61■□□□□ 0.41
SNRPA1-206ENST00000558059 SHROOM4Q9ULL8 1493 aa17.49■□□□□ 0.39
SNRPA1-206ENST00000558059 EIF4G1Q04637 1599 aaKnown RBP17.27■□□□□ 0.35
SNRPA1-206ENST00000558059 CC2D2AQ9P2K1 1620 aa17.25■□□□□ 0.35
SNRPA1-206ENST00000558059 CECR2Q9BXF3 1484 aa17.15■□□□□ 0.34
SNRPA1-206ENST00000558059 POTEDQ86YR6 584 aa17.11■□□□□ 0.33
SNRPA1-206ENST00000558059 MSH5O43196 834 aa17.02■□□□□ 0.32
SNRPA1-206ENST00000558059 SMARCA4P51532 1647 aa16.84■□□□□ 0.29
SNRPA1-206ENST00000558059 PLPPR3Q6T4P5 718 aa16.83■□□□□ 0.28
SNRPA1-206ENST00000558059 NCAPD3P42695 1498 aa16.81■□□□□ 0.28
SNRPA1-206ENST00000558059 PIAS4Q8N2W9 510 aaPredicted RBP16.81■□□□□ 0.28
SNRPA1-206ENST00000558059 ATAD2BQ9ULI0 1458 aa16.8■□□□□ 0.28
SNRPA1-206ENST00000558059 BAZ1AQ9NRL2 1556 aaPredicted RBP16.77■□□□□ 0.28
SNRPA1-206ENST00000558059 SMARCA2P51531 1590 aa16.74■□□□□ 0.27
SNRPA1-206ENST00000558059 MROH2BQ7Z745 1585 aa16.7■□□□□ 0.26
SNRPA1-206ENST00000558059 HMGXB3Q12766 1538 aa16.7■□□□□ 0.26
SNRPA1-206ENST00000558059 PPP6R1Q9UPN7 881 aa16.69■□□□□ 0.26
SNRPA1-206ENST00000558059 PEG3Q9GZU2 1588 aa16.68■□□□□ 0.26
SNRPA1-206ENST00000558059 BAZ1BQ9UIG0 1483 aaKnown RBP16.62■□□□□ 0.25
SNRPA1-206ENST00000558059 ADRA2BP18089 450 aa16.58■□□□□ 0.24
SNRPA1-206ENST00000558059 WIZO95785 1651 aa16.51■□□□□ 0.23
SNRPA1-206ENST00000558059 NESP48681 1621 aa16.47■□□□□ 0.23
SNRPA1-206ENST00000558059 RSF1Q96T23 1441 aaPredicted RBP16.45■□□□□ 0.22
SNRPA1-206ENST00000558059 ERCC6Q03468 1493 aa16.42■□□□□ 0.22
SNRPA1-206ENST00000558059 LAMC3Q9Y6N6 1575 aa16.38■□□□□ 0.21
SNRPA1-206ENST00000558059 CUX2O14529 1486 aa16.32■□□□□ 0.2
SNRPA1-206ENST00000558059 CADPSQ9ULU8 1353 aa16.31■□□□□ 0.2
SNRPA1-206ENST00000558059 TOP2AP11388 1531 aaKnown RBP16.29■□□□□ 0.2
SNRPA1-206ENST00000558059 PDS5BQ9NTI5 1447 aa16.28■□□□□ 0.2
SNRPA1-206ENST00000558059 KIF21AQ7Z4S6 1674 aa16.26■□□□□ 0.19
SNRPA1-206ENST00000558059 THOC2Q8NI27 1593 aaKnown RBP16.24■□□□□ 0.19
SNRPA1-206ENST00000558059 CFTRP13569 1480 aa16.18■□□□□ 0.18
SNRPA1-206ENST00000558059 CCDC88BA6NC98 1476 aa16.13■□□□□ 0.17
SNRPA1-206ENST00000558059 FANCD2Q9BXW9 1451 aa16.11■□□□□ 0.17
SNRPA1-206ENST00000558059 MRC2Q9UBG0 1479 aa16.11■□□□□ 0.17
SNRPA1-206ENST00000558059 CEP164Q9UPV0 1460 aa16.1■□□□□ 0.17
SNRPA1-206ENST00000558059 DNAJC5Q9H3Z4 198 aa16.07■□□□□ 0.16
SNRPA1-206ENST00000558059 WDR62O43379 1518 aa16.07■□□□□ 0.16
SNRPA1-206ENST00000558059 PRDM2Q13029 1718 aa16.04■□□□□ 0.16
SNRPA1-206ENST00000558059 URB2Q14146 1524 aaKnown RBP15.98■□□□□ 0.15
SNRPA1-206ENST00000558059 SUPT5HO00267 1087 aaKnown RBP15.89■□□□□ 0.13
SNRPA1-206ENST00000558059 TOPBP1Q92547 1522 aa15.84■□□□□ 0.13
SNRPA1-206ENST00000558059 ABCC8Q09428 1581 aa15.82■□□□□ 0.12
SNRPA1-206ENST00000558059 DNMBPQ6XZF7 1577 aa15.8■□□□□ 0.12
SNRPA1-206ENST00000558059 IFT140Q96RY7 1462 aa15.77■□□□□ 0.11
SNRPA1-206ENST00000558059 ZNF608Q9ULD9 1512 aaPredicted RBP15.73■□□□□ 0.11
SNRPA1-206ENST00000558059 POLA1P09884 1462 aaPredicted RBP15.7■□□□□ 0.1
SNRPA1-206ENST00000558059 TARBP1Q13395 1621 aaKnown RBP15.69■□□□□ 0.1
SNRPA1-206ENST00000558059 CUX1P39880 1505 aa15.68■□□□□ 0.1
SNRPA1-206ENST00000558059 RAD54L2Q9Y4B4 1467 aa15.65■□□□□ 0.1
SNRPA1-206ENST00000558059 EIF4G3O43432 1585 aaKnown RBP15.64■□□□□ 0.09
SNRPA1-206ENST00000558059 OSCARQ8IYS5 282 aa15.64■□□□□ 0.09
SNRPA1-206ENST00000558059 SOGA1O94964 1423 aa15.63■□□□□ 0.09
SNRPA1-206ENST00000558059 AQRO60306 1485 aaKnown RBP eCLIP15.63■□□□□ 0.097e-12■□□□□ 9.9
SNRPA1-206ENST00000558059 FGD5Q6ZNL6 1462 aa15.63■□□□□ 0.09
SNRPA1-206ENST00000558059 TDRD9Q8NDG6 1382 aaKnown RBP15.57■□□□□ 0.08
SNRPA1-206ENST00000558059 WDR97A6NE52 1622 aa15.53■□□□□ 0.08
SNRPA1-206ENST00000558059 CHD1O14646 1710 aa15.5■□□□□ 0.07
SNRPA1-206ENST00000558059 WRNQ14191 1432 aaPredicted RBP eCLIP15.49■□□□□ 0.07
SNRPA1-206ENST00000558059 TOP2BQ02880 1626 aa15.48■□□□□ 0.07
SNRPA1-206ENST00000558059 ABCA10Q8WWZ4 1543 aa15.48■□□□□ 0.07
SNRPA1-206ENST00000558059 BIVM-ERCC5R4GMW8 1640 aa15.47■□□□□ 0.07
SNRPA1-206ENST00000558059 SYNJ1O43426 1573 aa15.47■□□□□ 0.07
SNRPA1-206ENST00000558059 GRIN2BQ13224 1484 aa15.46■□□□□ 0.06
SNRPA1-206ENST00000558059 SNAPC4Q5SXM2 1469 aa15.46■□□□□ 0.06
SNRPA1-206ENST00000558059 FBLN2P98095 1184 aa15.45■□□□□ 0.06
SNRPA1-206ENST00000558059 GAPVD1Q14C86 1478 aa15.45■□□□□ 0.06
SNRPA1-206ENST00000558059 TRIM41Q8WV44 630 aa15.44■□□□□ 0.06
SNRPA1-206ENST00000558059 MAGI1Q96QZ7 1491 aaPredicted RBP15.43■□□□□ 0.06
SNRPA1-206ENST00000558059 ABCA5Q8WWZ7 1642 aa15.42■□□□□ 0.06
SNRPA1-206ENST00000558059 PBRM1Q86U86 1689 aa15.41■□□□□ 0.06
SNRPA1-206ENST00000558059 RIMBP3CA6NJZ7 1639 aa15.4■□□□□ 0.06
SNRPA1-206ENST00000558059 RIMBP3BA6NNM3 1639 aa15.4■□□□□ 0.06
SNRPA1-206ENST00000558059 RIMBP3Q9UFD9 1639 aa15.4■□□□□ 0.06
SNRPA1-206ENST00000558059 CHMP7Q8WUX9 453 aaPredicted RBP15.39■□□□□ 0.05
SNRPA1-206ENST00000558059 SYNJ2O15056 1496 aa15.38■□□□□ 0.05
SNRPA1-206ENST00000558059 ARHGEF11O15085 1522 aa15.38■□□□□ 0.05
SNRPA1-206ENST00000558059 DMRT2Q9Y5R5 561 aa15.33■□□□□ 0.04
SNRPA1-206ENST00000558059 CLASP1Q7Z460 1538 aa15.33■□□□□ 0.04
SNRPA1-206ENST00000558059 MAPK8IP2Q13387 824 aaPredicted RBP15.32■□□□□ 0.04
SNRPA1-206ENST00000558059 ADAMTS12P58397 1594 aa15.28■□□□□ 0.04
SNRPA1-206ENST00000558059 ERICH3Q5RHP9 1530 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms