RNA–Protein interactions for RNA: ENST00000557554.5

ABCD4-227, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 4

Gene ABCD4, Length 523 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-227ENST00000557554 NISCHQ9Y2I1 1504 aa26.21■■□□□ 1.79
ABCD4-227ENST00000557554 ABCC9O60706 1549 aa24.48■■□□□ 1.51
ABCD4-227ENST00000557554 DNAJC5BQ9UF47 199 aa23.78■■□□□ 1.4
ABCD4-227ENST00000557554 CCDC180Q9P1Z9 1646 aa23.76■■□□□ 1.39
ABCD4-227ENST00000557554 RB1CC1Q8TDY2 1594 aa22.97■■□□□ 1.27
ABCD4-227ENST00000557554 PABPN1Q86U42 306 aaKnown RBP eCLIP22.74■■□□□ 1.23
ABCD4-227ENST00000557554 NACADO15069 1562 aa22.67■■□□□ 1.22
ABCD4-227ENST00000557554 UNC13AQ9UPW8 1703 aa22.49■■□□□ 1.19
ABCD4-227ENST00000557554 BICRAQ9NZM4 1560 aa22.42■■□□□ 1.18
ABCD4-227ENST00000557554 DCAF8L2P0C7V8 631 aa22.39■■□□□ 1.17
ABCD4-227ENST00000557554 DNAJC5Q9H3Z4 198 aa22.32■■□□□ 1.16
ABCD4-227ENST00000557554 MYO15BQ96JP2 1530 aa22.17■■□□□ 1.14
ABCD4-227ENST00000557554 CECR2Q9BXF3 1484 aa22.14■■□□□ 1.13
ABCD4-227ENST00000557554 CC2D2AQ9P2K1 1620 aa22.09■■□□□ 1.13
ABCD4-227ENST00000557554 SHROOM4Q9ULL8 1493 aa21.96■■□□□ 1.11
ABCD4-227ENST00000557554 EIF4G1Q04637 1599 aaKnown RBP21.87■■□□□ 1.09
ABCD4-227ENST00000557554 DCAF1Q9Y4B6 1507 aa21.61■■□□□ 1.05
ABCD4-227ENST00000557554 SCRIBQ14160 1630 aa21.58■■□□□ 1.04
ABCD4-227ENST00000557554 ZCCHC6Q5VYS8 1495 aaKnown RBP21.53■■□□□ 1.04
ABCD4-227ENST00000557554 CUX2O14529 1486 aa21.39■■□□□ 1.02
ABCD4-227ENST00000557554 ERCC6Q03468 1493 aa21.13■□□□□ 0.97
ABCD4-227ENST00000557554 NCAPD3P42695 1498 aa21.01■□□□□ 0.95
ABCD4-227ENST00000557554 TRIM41Q8WV44 630 aa20.9■□□□□ 0.94
ABCD4-227ENST00000557554 NESP48681 1621 aa20.87■□□□□ 0.93
ABCD4-227ENST00000557554 ATAD2BQ9ULI0 1458 aa20.81■□□□□ 0.92
ABCD4-227ENST00000557554 THOC2Q8NI27 1593 aaKnown RBP20.76■□□□□ 0.91
ABCD4-227ENST00000557554 HMGXB3Q12766 1538 aa20.7■□□□□ 0.9
ABCD4-227ENST00000557554 SMARCA2P51531 1590 aa20.65■□□□□ 0.9
ABCD4-227ENST00000557554 LAMC3Q9Y6N6 1575 aa20.56■□□□□ 0.88
ABCD4-227ENST00000557554 SMARCA4P51532 1647 aa20.56■□□□□ 0.88
ABCD4-227ENST00000557554 KIF21AQ7Z4S6 1674 aa20.52■□□□□ 0.88
ABCD4-227ENST00000557554 BAZ1BQ9UIG0 1483 aaKnown RBP20.5■□□□□ 0.87
ABCD4-227ENST00000557554 PDS5BQ9NTI5 1447 aa20.48■□□□□ 0.87
ABCD4-227ENST00000557554 PEG3Q9GZU2 1588 aa20.41■□□□□ 0.86
ABCD4-227ENST00000557554 OSCARQ8IYS5 282 aa20.36■□□□□ 0.85
ABCD4-227ENST00000557554 BAZ1AQ9NRL2 1556 aaPredicted RBP20.34■□□□□ 0.85
ABCD4-227ENST00000557554 MRC2Q9UBG0 1479 aa20.33■□□□□ 0.85
ABCD4-227ENST00000557554 WDR62O43379 1518 aa20.32■□□□□ 0.84
ABCD4-227ENST00000557554 CADPSQ9ULU8 1353 aa20.31■□□□□ 0.84
ABCD4-227ENST00000557554 MROH2BQ7Z745 1585 aa20.19■□□□□ 0.82
ABCD4-227ENST00000557554 RIMBP3CA6NJZ7 1639 aa20.11■□□□□ 0.81
ABCD4-227ENST00000557554 RIMBP3BA6NNM3 1639 aa20.11■□□□□ 0.81
ABCD4-227ENST00000557554 RIMBP3Q9UFD9 1639 aa20.11■□□□□ 0.81
ABCD4-227ENST00000557554 CEP164Q9UPV0 1460 aa20.08■□□□□ 0.81
ABCD4-227ENST00000557554 FANCD2Q9BXW9 1451 aa20.03■□□□□ 0.8
ABCD4-227ENST00000557554 ARHGEF11O15085 1522 aa19.97■□□□□ 0.79
ABCD4-227ENST00000557554 URB2Q14146 1524 aaKnown RBP19.94■□□□□ 0.78
ABCD4-227ENST00000557554 CFTRP13569 1480 aa19.92■□□□□ 0.78
ABCD4-227ENST00000557554 CYB5RLQ6IPT4 315 aa19.92■□□□□ 0.78
ABCD4-227ENST00000557554 WIZO95785 1651 aa19.89■□□□□ 0.77
ABCD4-227ENST00000557554 TRHP20396 242 aaPredicted RBP19.86■□□□□ 0.77
ABCD4-227ENST00000557554 ZNF608Q9ULD9 1512 aaPredicted RBP19.82■□□□□ 0.76
ABCD4-227ENST00000557554 AEBP2Q6ZN18 517 aaPredicted RBP19.78■□□□□ 0.76
ABCD4-227ENST00000557554 ARAP1Q96P48 1450 aa19.74■□□□□ 0.75
ABCD4-227ENST00000557554 IFT140Q96RY7 1462 aa19.73■□□□□ 0.75
ABCD4-227ENST00000557554 RSF1Q96T23 1441 aaPredicted RBP19.62■□□□□ 0.73
ABCD4-227ENST00000557554 CHD1O14646 1710 aa19.59■□□□□ 0.73
ABCD4-227ENST00000557554 EIF4G3O43432 1585 aaKnown RBP19.59■□□□□ 0.73
ABCD4-227ENST00000557554 TOPBP1Q92547 1522 aa19.58■□□□□ 0.73
ABCD4-227ENST00000557554 PRDM2Q13029 1718 aa19.56■□□□□ 0.72
ABCD4-227ENST00000557554 AQRO60306 1485 aaKnown RBP eCLIP19.55■□□□□ 0.727e-8■■■■■ 31.3
ABCD4-227ENST00000557554 TOP2AP11388 1531 aaKnown RBP19.55■□□□□ 0.72
ABCD4-227ENST00000557554 FBLN2P98095 1184 aa19.51■□□□□ 0.71
ABCD4-227ENST00000557554 TARBP1Q13395 1621 aaKnown RBP19.49■□□□□ 0.71
ABCD4-227ENST00000557554 ABCC8Q09428 1581 aa19.48■□□□□ 0.71
ABCD4-227ENST00000557554 DNMBPQ6XZF7 1577 aa19.41■□□□□ 0.7
ABCD4-227ENST00000557554 CCDC88BA6NC98 1476 aa19.41■□□□□ 0.7
ABCD4-227ENST00000557554 CLASP1Q7Z460 1538 aa19.4■□□□□ 0.7
ABCD4-227ENST00000557554 POLA1P09884 1462 aaPredicted RBP19.34■□□□□ 0.69
ABCD4-227ENST00000557554 TDRD9Q8NDG6 1382 aaKnown RBP19.32■□□□□ 0.68
ABCD4-227ENST00000557554 RAD54L2Q9Y4B4 1467 aa19.29■□□□□ 0.68
ABCD4-227ENST00000557554 CHMP7Q8WUX9 453 aaPredicted RBP19.28■□□□□ 0.68
ABCD4-227ENST00000557554 SNAPC4Q5SXM2 1469 aa19.27■□□□□ 0.67
ABCD4-227ENST00000557554 SYNJ1O43426 1573 aa19.26■□□□□ 0.67
ABCD4-227ENST00000557554 SOGA1O94964 1423 aa19.25■□□□□ 0.67
ABCD4-227ENST00000557554 GAPVD1Q14C86 1478 aa19.23■□□□□ 0.67
ABCD4-227ENST00000557554 MAGI1Q96QZ7 1491 aaPredicted RBP19.21■□□□□ 0.67
ABCD4-227ENST00000557554 WDR97A6NE52 1622 aa19.17■□□□□ 0.66
ABCD4-227ENST00000557554 SYNJ2O15056 1496 aa19.16■□□□□ 0.66
ABCD4-227ENST00000557554 GRIN2BQ13224 1484 aa19.13■□□□□ 0.65
ABCD4-227ENST00000557554 ILDR1Q86SU0 546 aaPredicted RBP19.12■□□□□ 0.65
ABCD4-227ENST00000557554 FGD5Q6ZNL6 1462 aa19.09■□□□□ 0.65
ABCD4-227ENST00000557554 ERCC6L2Q5T890 1561 aa19.06■□□□□ 0.64
ABCD4-227ENST00000557554 KIF13AQ9H1H9 1805 aa19.02■□□□□ 0.64
ABCD4-227ENST00000557554 KDM4FA0A1W2PPD8 638 aa19.01■□□□□ 0.63
ABCD4-227ENST00000557554 CUX1P39880 1505 aa19■□□□□ 0.63
ABCD4-227ENST00000557554 PBRM1Q86U86 1689 aa18.96■□□□□ 0.63
ABCD4-227ENST00000557554 CEP170Q5SW79 1584 aa18.93■□□□□ 0.62
ABCD4-227ENST00000557554 NUP160Q12769 1436 aa18.89■□□□□ 0.61
ABCD4-227ENST00000557554 GRIN2AQ12879 1464 aa18.89■□□□□ 0.61
ABCD4-227ENST00000557554 SHROOM2Q13796 1616 aa18.88■□□□□ 0.61
ABCD4-227ENST00000557554 ABCA10Q8WWZ4 1543 aa18.87■□□□□ 0.61
ABCD4-227ENST00000557554 ABCA5Q8WWZ7 1642 aa18.87■□□□□ 0.61
ABCD4-227ENST00000557554 FAM69CQ0P6D2 419 aa18.85■□□□□ 0.61
ABCD4-227ENST00000557554 ABCC10Q5T3U5 1492 aa18.84■□□□□ 0.61
ABCD4-227ENST00000557554 PRG4Q92954 1404 aaPredicted RBP18.75■□□□□ 0.59
ABCD4-227ENST00000557554 ADAMTS12P58397 1594 aa18.75■□□□□ 0.59
ABCD4-227ENST00000557554 JPH4Q96JJ6 628 aa18.73■□□□□ 0.59
ABCD4-227ENST00000557554 MAPKBP1O60336 1514 aa18.73■□□□□ 0.59
ABCD4-227ENST00000557554 DIP2BQ9P265 1576 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms