RNA–Protein interactions for RNA: ENST00000557026.5

NEK9-210, Transcript of NIMA related kinase 9, humanhuman

TSL 2

Gene NEK9, Length 5,177 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-210ENST00000557026 DCAF8L2P0C7V8 631 aa20.62■□□□□ 0.89
NEK9-210ENST00000557026 NISCHQ9Y2I1 1504 aa20.03■□□□□ 0.8
NEK9-210ENST00000557026 FAM9AQ8IZU1 332 aaPredicted RBP19.51■□□□□ 0.71
NEK9-210ENST00000557026 SUPT5HO00267 1087 aaKnown RBP19.12■□□□□ 0.65
NEK9-210ENST00000557026 APLP2Q06481 763 aa19.02■□□□□ 0.63
NEK9-210ENST00000557026 PELP1Q8IZL8 1130 aaKnown RBP18.78■□□□□ 0.6
NEK9-210ENST00000557026 SHROOM4Q9ULL8 1493 aa18.68■□□□□ 0.58
NEK9-210ENST00000557026 TRIM41Q8WV44 630 aa18.12■□□□□ 0.49
NEK9-210ENST00000557026 ZEB1P37275 1124 aaPredicted RBP18.07■□□□□ 0.48
NEK9-210ENST00000557026 EHMT2Q96KQ7 1210 aa18.04■□□□□ 0.48
NEK9-210ENST00000557026 CCER1Q8TC90 406 aaPredicted RBP17.96■□□□□ 0.46
NEK9-210ENST00000557026 ATP1B4Q9UN42 357 aaPredicted RBP17.95■□□□□ 0.46
NEK9-210ENST00000557026 UBTFP17480 764 aaKnown RBP17.95■□□□□ 0.46
NEK9-210ENST00000557026 CENPBP07199 599 aaPredicted RBP17.71■□□□□ 0.43
NEK9-210ENST00000557026 MYT1LQ9UL68 1186 aa17.67■□□□□ 0.42
NEK9-210ENST00000557026 RANGAP1P46060 587 aaPredicted RBP17.66■□□□□ 0.42
NEK9-210ENST00000557026 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.59■□□□□ 0.41
NEK9-210ENST00000557026 HNRNPUL2Q1KMD3 747 aaKnown RBP17.59■□□□□ 0.41
NEK9-210ENST00000557026 PCGF6Q9BYE7 350 aa17.56■□□□□ 0.4
NEK9-210ENST00000557026 NEFLP07196 543 aa17.55■□□□□ 0.4
NEK9-210ENST00000557026 ERICH6Q7L0X2 663 aa17.52■□□□□ 0.39
NEK9-210ENST00000557026 TTBK1Q5TCY1 1321 aaPredicted RBP17.47■□□□□ 0.39
NEK9-210ENST00000557026 ABCC9O60706 1549 aa17.34■□□□□ 0.37
NEK9-210ENST00000557026 TRIM26Q12899 539 aaPredicted RBP17.19■□□□□ 0.34
NEK9-210ENST00000557026 DAXXQ9UER7 740 aaPredicted RBP17.1■□□□□ 0.33
NEK9-210ENST00000557026 PABPN1Q86U42 306 aaKnown RBP eCLIP17.07■□□□□ 0.32
NEK9-210ENST00000557026 CDK11AQ9UQ88 783 aaPredicted RBP17.07■□□□□ 0.32
NEK9-210ENST00000557026 ITGAEP38570 1179 aa16.99■□□□□ 0.31
NEK9-210ENST00000557026 NPM1P06748 294 aaKnown RBP eCLIP16.96■□□□□ 0.31
NEK9-210ENST00000557026 POLR3GLQ9BT43 218 aa16.95■□□□□ 0.3
NEK9-210ENST00000557026 SLC4A1APQ9BWU0 796 aaKnown RBP16.95■□□□□ 0.3
NEK9-210ENST00000557026 ESF1Q9H501 851 aaKnown RBP16.94■□□□□ 0.3
NEK9-210ENST00000557026 FBLN2P98095 1184 aa16.91■□□□□ 0.3
NEK9-210ENST00000557026 MYT1Q01538 1121 aa16.91■□□□□ 0.3
NEK9-210ENST00000557026 YTHDC1Q96MU7 727 aaKnown RBP16.89■□□□□ 0.3
NEK9-210ENST00000557026 TRIM52Q96A61 297 aa16.89■□□□□ 0.29
NEK9-210ENST00000557026 CHIC1Q5VXU3 224 aa16.88■□□□□ 0.29
NEK9-210ENST00000557026 NEFMP07197 916 aa16.88■□□□□ 0.29
NEK9-210ENST00000557026 FAM50AQ14320 339 aaKnown RBP16.87■□□□□ 0.29
NEK9-210ENST00000557026 ACIN1Q9UKV3 1341 aaKnown RBP16.84■□□□□ 0.29
NEK9-210ENST00000557026 ZBTB47Q9UFB7 747 aaPredicted RBP16.81■□□□□ 0.28
NEK9-210ENST00000557026 CCDC180Q9P1Z9 1646 aa16.78■□□□□ 0.28
NEK9-210ENST00000557026 BCANQ96GW7 911 aa16.7■□□□□ 0.26
NEK9-210ENST00000557026 RB1CC1Q8TDY2 1594 aa16.69■□□□□ 0.26
NEK9-210ENST00000557026 CSRNP3Q8WYN3 585 aa16.66■□□□□ 0.26
NEK9-210ENST00000557026 CLSPNQ9HAW4 1339 aa16.65■□□□□ 0.26
NEK9-210ENST00000557026 SCRIBQ14160 1630 aa16.64■□□□□ 0.25
NEK9-210ENST00000557026 PPARGC1BQ86YN6 1023 aaKnown RBP16.63■□□□□ 0.25
NEK9-210ENST00000557026 STAG3Q9UJ98 1225 aa16.58■□□□□ 0.25
NEK9-210ENST00000557026 ZNF316A6NFI3 1004 aaPredicted RBP16.58■□□□□ 0.24
NEK9-210ENST00000557026 ANP32CO43423 234 aa16.55■□□□□ 0.24
NEK9-210ENST00000557026 HRCP23327 699 aa16.55■□□□□ 0.24
NEK9-210ENST00000557026 ZCCHC6Q5VYS8 1495 aaKnown RBP16.52■□□□□ 0.24
NEK9-210ENST00000557026 NACADO15069 1562 aa16.5■□□□□ 0.23
NEK9-210ENST00000557026 LOC105371045A0A1W2PR82 267 aa16.49■□□□□ 0.23
NEK9-210ENST00000557026 CHMP7Q8WUX9 453 aaPredicted RBP16.46■□□□□ 0.23
NEK9-210ENST00000557026 ZNF777Q9ULD5 760 aaPredicted RBP16.44■□□□□ 0.22
NEK9-210ENST00000557026 TSPY4P0CV99 314 aa16.44■□□□□ 0.22
NEK9-210ENST00000557026 TSPY10P0CW01 314 aa16.44■□□□□ 0.22
NEK9-210ENST00000557026 ZNF326Q5BKZ1 582 aaKnown RBP16.44■□□□□ 0.22
NEK9-210ENST00000557026 NEUROD1Q13562 356 aa16.42■□□□□ 0.22
NEK9-210ENST00000557026 RTL5Q5HYW3 569 aaPredicted RBP16.42■□□□□ 0.22
NEK9-210ENST00000557026 CANXP27824 592 aaKnown RBP16.42■□□□□ 0.22
NEK9-210ENST00000557026 EEA1Q15075 1411 aa16.4■□□□□ 0.22
NEK9-210ENST00000557026 RSF1Q96T23 1441 aaPredicted RBP16.35■□□□□ 0.21
NEK9-210ENST00000557026 SLC24A1O60721 1099 aa16.34■□□□□ 0.21
NEK9-210ENST00000557026 CNGB1Q14028 1251 aaPredicted RBP16.33■□□□□ 0.21
NEK9-210ENST00000557026 DIEXFQ68CQ4 756 aaKnown RBP16.32■□□□□ 0.2
NEK9-210ENST00000557026 P3H3Q8IVL6 736 aa16.31■□□□□ 0.2
NEK9-210ENST00000557026 TONSLQ96HA7 1378 aa16.29■□□□□ 0.2
NEK9-210ENST00000557026 CHGAP10645 457 aaKnown RBP16.29■□□□□ 0.2
NEK9-210ENST00000557026 PLEKHD1A6NEE1 506 aa16.26■□□□□ 0.19
NEK9-210ENST00000557026 MTUS2Q5JR59 1369 aa16.25■□□□□ 0.19
NEK9-210ENST00000557026 NPM2Q86SE8 214 aaKnown RBP16.23■□□□□ 0.19
NEK9-210ENST00000557026 BAZ1BQ9UIG0 1483 aaKnown RBP16.2■□□□□ 0.18
NEK9-210ENST00000557026 ERCC6Q03468 1493 aa16.19■□□□□ 0.18
NEK9-210ENST00000557026 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.18■□□□□ 0.18
NEK9-210ENST00000557026 CDCA8Q53HL2 280 aa16.17■□□□□ 0.18
NEK9-210ENST00000557026 ARID3CA6NKF2 412 aa16.16■□□□□ 0.18
NEK9-210ENST00000557026 PPP1R15AO75807 674 aaPredicted RBP16.15■□□□□ 0.18
NEK9-210ENST00000557026 HDGFP51858 240 aaKnown RBP16.15■□□□□ 0.18
NEK9-210ENST00000557026 EIF5BO60841 1220 aaKnown RBP16.14■□□□□ 0.17
NEK9-210ENST00000557026 KIF27Q86VH2 1401 aa16.13■□□□□ 0.17
NEK9-210ENST00000557026 DCAF1Q9Y4B6 1507 aa16.11■□□□□ 0.17
NEK9-210ENST00000557026 UPF2Q9HAU5 1272 aaKnown RBP16.1■□□□□ 0.17
NEK9-210ENST00000557026 BAZ1AQ9NRL2 1556 aaPredicted RBP16.04■□□□□ 0.16
NEK9-210ENST00000557026 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.04■□□□□ 0.162e-6■■□□□ 13.7
NEK9-210ENST00000557026 WDR43Q15061 677 aaKnown RBP eCLIP16.03■□□□□ 0.16
NEK9-210ENST00000557026 GOLGA3Q08378 1498 aa16.03■□□□□ 0.16
NEK9-210ENST00000557026 C14orf37Q86TY3 774 aa16.01■□□□□ 0.15
NEK9-210ENST00000557026 CLIP1P30622 1438 aa16.01■□□□□ 0.15
NEK9-210ENST00000557026 ARID4BQ4LE39 1312 aaPredicted RBP16.01■□□□□ 0.15
NEK9-210ENST00000557026 ANP32BQ92688 251 aaKnown RBP15.99■□□□□ 0.15
NEK9-210ENST00000557026 WRNQ14191 1432 aaPredicted RBP eCLIP15.99■□□□□ 0.15
NEK9-210ENST00000557026 CFAP53Q96M91 514 aa15.99■□□□□ 0.15
NEK9-210ENST00000557026 MYH16Q9H6N6 1097 aa15.99■□□□□ 0.15
NEK9-210ENST00000557026 PDS5BQ9NTI5 1447 aa15.98■□□□□ 0.15
NEK9-210ENST00000557026 KANK1Q14678 1352 aa15.97■□□□□ 0.15
NEK9-210ENST00000557026 ANP32AP39687 249 aaKnown RBP15.97■□□□□ 0.15
NEK9-210ENST00000557026 HAP1P54257 671 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms