RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 NISCHQ9Y2I1 1504 aa23.81■■□□□ 1.4
SYNE2-224ENST00000557024 AEBP2Q6ZN18 517 aaPredicted RBP23.47■■□□□ 1.35
SYNE2-224ENST00000557024 CHIC1Q5VXU3 224 aa22.45■■□□□ 1.18
SYNE2-224ENST00000557024 ABCC9O60706 1549 aa22.02■■□□□ 1.12
SYNE2-224ENST00000557024 CCDC180Q9P1Z9 1646 aa21.47■■□□□ 1.03
SYNE2-224ENST00000557024 DNAJC5BQ9UF47 199 aa21.06■□□□□ 0.96
SYNE2-224ENST00000557024 RB1CC1Q8TDY2 1594 aa20.7■□□□□ 0.9
SYNE2-224ENST00000557024 PABPN1Q86U42 306 aaKnown RBP eCLIP20.47■□□□□ 0.87
SYNE2-224ENST00000557024 NACADO15069 1562 aa20.45■□□□□ 0.86
SYNE2-224ENST00000557024 DCAF8L2P0C7V8 631 aa20.38■□□□□ 0.85
SYNE2-224ENST00000557024 UNC13AQ9UPW8 1703 aa20.14■□□□□ 0.81
SYNE2-224ENST00000557024 BICRAQ9NZM4 1560 aa20.12■□□□□ 0.81
SYNE2-224ENST00000557024 SENP3Q9H4L4 574 aaPredicted RBP20.07■□□□□ 0.8
SYNE2-224ENST00000557024 MYO15BQ96JP2 1530 aa20.01■□□□□ 0.79
SYNE2-224ENST00000557024 CECR2Q9BXF3 1484 aa19.86■□□□□ 0.77
SYNE2-224ENST00000557024 PHF23Q9BUL5 403 aaPredicted RBP19.85■□□□□ 0.77
SYNE2-224ENST00000557024 CC2D2AQ9P2K1 1620 aa19.81■□□□□ 0.76
SYNE2-224ENST00000557024 SHROOM4Q9ULL8 1493 aa19.78■□□□□ 0.76
SYNE2-224ENST00000557024 EIF4G1Q04637 1599 aaKnown RBP19.67■□□□□ 0.74
SYNE2-224ENST00000557024 ZCCHC6Q5VYS8 1495 aaKnown RBP19.65■□□□□ 0.74
SYNE2-224ENST00000557024 SCRIBQ14160 1630 aa19.63■□□□□ 0.73
SYNE2-224ENST00000557024 DNAJC5Q9H3Z4 198 aa19.62■□□□□ 0.73
SYNE2-224ENST00000557024 DCAF1Q9Y4B6 1507 aa19.61■□□□□ 0.73
SYNE2-224ENST00000557024 CUX2O14529 1486 aa19.1■□□□□ 0.65
SYNE2-224ENST00000557024 ERCC6Q03468 1493 aa19.03■□□□□ 0.64
SYNE2-224ENST00000557024 NCAPD3P42695 1498 aa18.91■□□□□ 0.62
SYNE2-224ENST00000557024 ATAD2BQ9ULI0 1458 aa18.81■□□□□ 0.6
SYNE2-224ENST00000557024 NESP48681 1621 aa18.79■□□□□ 0.6
SYNE2-224ENST00000557024 HMGXB3Q12766 1538 aa18.71■□□□□ 0.59
SYNE2-224ENST00000557024 SMARCA2P51531 1590 aa18.7■□□□□ 0.58
SYNE2-224ENST00000557024 FOXD1Q16676 465 aa18.68■□□□□ 0.58
SYNE2-224ENST00000557024 SMARCA4P51532 1647 aa18.65■□□□□ 0.58
SYNE2-224ENST00000557024 TRIM41Q8WV44 630 aa18.64■□□□□ 0.57
SYNE2-224ENST00000557024 THOC2Q8NI27 1593 aaKnown RBP18.63■□□□□ 0.57
SYNE2-224ENST00000557024 BAZ1BQ9UIG0 1483 aaKnown RBP18.61■□□□□ 0.57
SYNE2-224ENST00000557024 LAMC3Q9Y6N6 1575 aa18.52■□□□□ 0.56
SYNE2-224ENST00000557024 BAZ1AQ9NRL2 1556 aaPredicted RBP18.5■□□□□ 0.55
SYNE2-224ENST00000557024 PDS5BQ9NTI5 1447 aa18.48■□□□□ 0.55
SYNE2-224ENST00000557024 PEG3Q9GZU2 1588 aa18.45■□□□□ 0.54
SYNE2-224ENST00000557024 KIF21AQ7Z4S6 1674 aa18.44■□□□□ 0.54
SYNE2-224ENST00000557024 PLPPR3Q6T4P5 718 aa18.42■□□□□ 0.54
SYNE2-224ENST00000557024 MROH2BQ7Z745 1585 aa18.37■□□□□ 0.53
SYNE2-224ENST00000557024 MRC2Q9UBG0 1479 aa18.34■□□□□ 0.53
SYNE2-224ENST00000557024 CADPSQ9ULU8 1353 aa18.34■□□□□ 0.53
SYNE2-224ENST00000557024 WDR62O43379 1518 aa18.29■□□□□ 0.52
SYNE2-224ENST00000557024 OSCARQ8IYS5 282 aa18.2■□□□□ 0.5
SYNE2-224ENST00000557024 CEP164Q9UPV0 1460 aa18.19■□□□□ 0.5
SYNE2-224ENST00000557024 FANCD2Q9BXW9 1451 aa18.14■□□□□ 0.49
SYNE2-224ENST00000557024 WIZO95785 1651 aa18.09■□□□□ 0.49
SYNE2-224ENST00000557024 CFTRP13569 1480 aa18.03■□□□□ 0.48
SYNE2-224ENST00000557024 URB2Q14146 1524 aaKnown RBP18.02■□□□□ 0.47
SYNE2-224ENST00000557024 RIMBP3CA6NJZ7 1639 aa17.97■□□□□ 0.47
SYNE2-224ENST00000557024 RIMBP3BA6NNM3 1639 aa17.97■□□□□ 0.47
SYNE2-224ENST00000557024 RIMBP3Q9UFD9 1639 aa17.97■□□□□ 0.47
SYNE2-224ENST00000557024 ARHGEF11O15085 1522 aa17.89■□□□□ 0.45
SYNE2-224ENST00000557024 ZNF608Q9ULD9 1512 aaPredicted RBP17.88■□□□□ 0.45
SYNE2-224ENST00000557024 TOP2AP11388 1531 aaKnown RBP17.84■□□□□ 0.45
SYNE2-224ENST00000557024 RSF1Q96T23 1441 aaPredicted RBP17.84■□□□□ 0.45
SYNE2-224ENST00000557024 IFT140Q96RY7 1462 aa17.83■□□□□ 0.45
SYNE2-224ENST00000557024 CYB5RLQ6IPT4 315 aa17.83■□□□□ 0.44
SYNE2-224ENST00000557024 TRHP20396 242 aaPredicted RBP17.78■□□□□ 0.44
SYNE2-224ENST00000557024 TOPBP1Q92547 1522 aa17.73■□□□□ 0.43
SYNE2-224ENST00000557024 EIF4G3O43432 1585 aaKnown RBP17.71■□□□□ 0.43
SYNE2-224ENST00000557024 ARAP1Q96P48 1450 aa17.7■□□□□ 0.42
SYNE2-224ENST00000557024 CCDC88BA6NC98 1476 aa17.68■□□□□ 0.42
SYNE2-224ENST00000557024 PRDM2Q13029 1718 aa17.67■□□□□ 0.42
SYNE2-224ENST00000557024 FBLN2P98095 1184 aa17.67■□□□□ 0.42
SYNE2-224ENST00000557024 AQRO60306 1485 aaKnown RBP eCLIP17.67■□□□□ 0.42
SYNE2-224ENST00000557024 ABCC8Q09428 1581 aa17.62■□□□□ 0.41
SYNE2-224ENST00000557024 CHD1O14646 1710 aa17.61■□□□□ 0.41
SYNE2-224ENST00000557024 DNMBPQ6XZF7 1577 aa17.61■□□□□ 0.41
SYNE2-224ENST00000557024 TARBP1Q13395 1621 aaKnown RBP17.58■□□□□ 0.4
SYNE2-224ENST00000557024 POLA1P09884 1462 aaPredicted RBP17.53■□□□□ 0.4
SYNE2-224ENST00000557024 PPP6R1Q9UPN7 881 aa17.51■□□□□ 0.39
SYNE2-224ENST00000557024 TDRD9Q8NDG6 1382 aaKnown RBP17.51■□□□□ 0.39
SYNE2-224ENST00000557024 PIAS4Q8N2W9 510 aaPredicted RBP17.5■□□□□ 0.39
SYNE2-224ENST00000557024 RAD54L2Q9Y4B4 1467 aa17.5■□□□□ 0.39
SYNE2-224ENST00000557024 MSH5O43196 834 aa17.49■□□□□ 0.39
SYNE2-224ENST00000557024 ADRA2BP18089 450 aa17.48■□□□□ 0.39
SYNE2-224ENST00000557024 SNAPC4Q5SXM2 1469 aa17.46■□□□□ 0.39
SYNE2-224ENST00000557024 SOGA1O94964 1423 aa17.46■□□□□ 0.39
SYNE2-224ENST00000557024 CLASP1Q7Z460 1538 aa17.45■□□□□ 0.38
SYNE2-224ENST00000557024 CHMP7Q8WUX9 453 aaPredicted RBP17.44■□□□□ 0.38
SYNE2-224ENST00000557024 SYNJ1O43426 1573 aa17.39■□□□□ 0.37
SYNE2-224ENST00000557024 FGD5Q6ZNL6 1462 aa17.37■□□□□ 0.37
SYNE2-224ENST00000557024 MAGI1Q96QZ7 1491 aaPredicted RBP17.37■□□□□ 0.37
SYNE2-224ENST00000557024 GRIN2BQ13224 1484 aa17.34■□□□□ 0.37
SYNE2-224ENST00000557024 SYNJ2O15056 1496 aa17.33■□□□□ 0.37
SYNE2-224ENST00000557024 WDR97A6NE52 1622 aa17.32■□□□□ 0.36
SYNE2-224ENST00000557024 GAPVD1Q14C86 1478 aa17.32■□□□□ 0.36
SYNE2-224ENST00000557024 CUX1P39880 1505 aa17.28■□□□□ 0.36
SYNE2-224ENST00000557024 ERCC6L2Q5T890 1561 aa17.18■□□□□ 0.34
SYNE2-224ENST00000557024 PBRM1Q86U86 1689 aa17.16■□□□□ 0.34
SYNE2-224ENST00000557024 ABCA10Q8WWZ4 1543 aa17.12■□□□□ 0.33
SYNE2-224ENST00000557024 GRIN2AQ12879 1464 aa17.12■□□□□ 0.33
SYNE2-224ENST00000557024 ABCA5Q8WWZ7 1642 aa17.11■□□□□ 0.33
SYNE2-224ENST00000557024 CEP170Q5SW79 1584 aa17.09■□□□□ 0.33
SYNE2-224ENST00000557024 NUP160Q12769 1436 aa17.07■□□□□ 0.32
SYNE2-224ENST00000557024 ADAMTS12P58397 1594 aa17.03■□□□□ 0.32
SYNE2-224ENST00000557024 WRNQ14191 1432 aaPredicted RBP eCLIP17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms