RNA–Protein interactions for RNA: ENST00000556831.5

SLIRP-207, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 729 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-207ENST00000556831 NISCHQ9Y2I1 1504 aa34.37■■■■□ 3.09
SLIRP-207ENST00000556831 CCDC180Q9P1Z9 1646 aa30.58■■■□□ 2.49
SLIRP-207ENST00000556831 ABCC9O60706 1549 aa30.22■■■□□ 2.43
SLIRP-207ENST00000556831 DNAJC5BQ9UF47 199 aa29.42■■■□□ 2.3
SLIRP-207ENST00000556831 RB1CC1Q8TDY2 1594 aa28.84■■■□□ 2.21
SLIRP-207ENST00000556831 DCAF8L2P0C7V8 631 aa28.78■■■□□ 2.2
SLIRP-207ENST00000556831 NACADO15069 1562 aa28.75■■■□□ 2.19
SLIRP-207ENST00000556831 ZCCHC6Q5VYS8 1495 aaKnown RBP28.61■■■□□ 2.17
SLIRP-207ENST00000556831 MYO15BQ96JP2 1530 aa28.47■■■□□ 2.15
SLIRP-207ENST00000556831 DNAJC5Q9H3Z4 198 aa28.42■■■□□ 2.14
SLIRP-207ENST00000556831 UNC13AQ9UPW8 1703 aa28.38■■■□□ 2.13
SLIRP-207ENST00000556831 DCAF1Q9Y4B6 1507 aa28.33■■■□□ 2.13
SLIRP-207ENST00000556831 PABPN1Q86U42 306 aaKnown RBP eCLIP28.22■■■□□ 2.11
SLIRP-207ENST00000556831 BICRAQ9NZM4 1560 aa28.15■■■□□ 2.1
SLIRP-207ENST00000556831 SCRIBQ14160 1630 aa28.03■■■□□ 2.08
SLIRP-207ENST00000556831 SHROOM4Q9ULL8 1493 aa27.55■■■□□ 2
SLIRP-207ENST00000556831 EIF4G1Q04637 1599 aaKnown RBP27.35■■□□□ 1.97
SLIRP-207ENST00000556831 CC2D2AQ9P2K1 1620 aa27.3■■□□□ 1.96
SLIRP-207ENST00000556831 CECR2Q9BXF3 1484 aa27.23■■□□□ 1.95
SLIRP-207ENST00000556831 SMARCA4P51532 1647 aa26.73■■□□□ 1.87
SLIRP-207ENST00000556831 CUX2O14529 1486 aa26.7■■□□□ 1.87
SLIRP-207ENST00000556831 ATAD2BQ9ULI0 1458 aa26.61■■□□□ 1.85
SLIRP-207ENST00000556831 BAZ1AQ9NRL2 1556 aaPredicted RBP26.59■■□□□ 1.85
SLIRP-207ENST00000556831 MROH2BQ7Z745 1585 aa26.57■■□□□ 1.84
SLIRP-207ENST00000556831 NCAPD3P42695 1498 aa26.56■■□□□ 1.84
SLIRP-207ENST00000556831 SMARCA2P51531 1590 aa26.48■■□□□ 1.83
SLIRP-207ENST00000556831 HMGXB3Q12766 1538 aa26.42■■□□□ 1.82
SLIRP-207ENST00000556831 PEG3Q9GZU2 1588 aa26.41■■□□□ 1.82
SLIRP-207ENST00000556831 TRIM41Q8WV44 630 aa26.35■■□□□ 1.81
SLIRP-207ENST00000556831 BAZ1BQ9UIG0 1483 aaKnown RBP26.35■■□□□ 1.81
SLIRP-207ENST00000556831 WIZO95785 1651 aa26.3■■□□□ 1.8
SLIRP-207ENST00000556831 RSF1Q96T23 1441 aaPredicted RBP26.15■■□□□ 1.78
SLIRP-207ENST00000556831 NESP48681 1621 aa26.15■■□□□ 1.78
SLIRP-207ENST00000556831 ERCC6Q03468 1493 aa26.08■■□□□ 1.77
SLIRP-207ENST00000556831 TOP2AP11388 1531 aaKnown RBP25.9■■□□□ 1.74
SLIRP-207ENST00000556831 LAMC3Q9Y6N6 1575 aa25.87■■□□□ 1.73
SLIRP-207ENST00000556831 KIF21AQ7Z4S6 1674 aa25.81■■□□□ 1.72
SLIRP-207ENST00000556831 CADPSQ9ULU8 1353 aa25.78■■□□□ 1.72
SLIRP-207ENST00000556831 THOC2Q8NI27 1593 aaKnown RBP25.74■■□□□ 1.71
SLIRP-207ENST00000556831 PDS5BQ9NTI5 1447 aa25.65■■□□□ 1.7
SLIRP-207ENST00000556831 CCDC88BA6NC98 1476 aa25.64■■□□□ 1.69
SLIRP-207ENST00000556831 CFTRP13569 1480 aa25.61■■□□□ 1.69
SLIRP-207ENST00000556831 FANCD2Q9BXW9 1451 aa25.53■■□□□ 1.68
SLIRP-207ENST00000556831 MRC2Q9UBG0 1479 aa25.49■■□□□ 1.67
SLIRP-207ENST00000556831 CEP164Q9UPV0 1460 aa25.47■■□□□ 1.67
SLIRP-207ENST00000556831 WDR62O43379 1518 aa25.44■■□□□ 1.66
SLIRP-207ENST00000556831 PRDM2Q13029 1718 aa25.43■■□□□ 1.66
SLIRP-207ENST00000556831 SUPT5HO00267 1087 aaKnown RBP25.38■■□□□ 1.65
SLIRP-207ENST00000556831 AEBP2Q6ZN18 517 aaPredicted RBP25.37■■□□□ 1.65
SLIRP-207ENST00000556831 URB2Q14146 1524 aaKnown RBP25.36■■□□□ 1.65
SLIRP-207ENST00000556831 TOPBP1Q92547 1522 aa25.12■■□□□ 1.61
SLIRP-207ENST00000556831 OSCARQ8IYS5 282 aa25.09■■□□□ 1.61
SLIRP-207ENST00000556831 DNMBPQ6XZF7 1577 aa25.05■■□□□ 1.6
SLIRP-207ENST00000556831 ZNF608Q9ULD9 1512 aaPredicted RBP24.99■■□□□ 1.59
SLIRP-207ENST00000556831 ABCC8Q09428 1581 aa24.94■■□□□ 1.58
SLIRP-207ENST00000556831 IFT140Q96RY7 1462 aa24.93■■□□□ 1.58
SLIRP-207ENST00000556831 CUX1P39880 1505 aa24.92■■□□□ 1.58
SLIRP-207ENST00000556831 RIMBP3CA6NJZ7 1639 aa24.92■■□□□ 1.58
SLIRP-207ENST00000556831 RIMBP3BA6NNM3 1639 aa24.92■■□□□ 1.58
SLIRP-207ENST00000556831 RIMBP3Q9UFD9 1639 aa24.92■■□□□ 1.58
SLIRP-207ENST00000556831 POLA1P09884 1462 aaPredicted RBP24.91■■□□□ 1.58
SLIRP-207ENST00000556831 TARBP1Q13395 1621 aaKnown RBP24.9■■□□□ 1.58
SLIRP-207ENST00000556831 RAD54L2Q9Y4B4 1467 aa24.87■■□□□ 1.57
SLIRP-207ENST00000556831 EIF4G3O43432 1585 aaKnown RBP24.84■■□□□ 1.57
SLIRP-207ENST00000556831 FGD5Q6ZNL6 1462 aa24.83■■□□□ 1.57
SLIRP-207ENST00000556831 TRHP20396 242 aaPredicted RBP24.79■■□□□ 1.56
SLIRP-207ENST00000556831 AQRO60306 1485 aaKnown RBP eCLIP24.78■■□□□ 1.562e-9■□□□□ 10.8
SLIRP-207ENST00000556831 SOGA1O94964 1423 aa24.74■■□□□ 1.55
SLIRP-207ENST00000556831 TDRD9Q8NDG6 1382 aaKnown RBP24.7■■□□□ 1.55
SLIRP-207ENST00000556831 ARHGEF11O15085 1522 aa24.7■■□□□ 1.54
SLIRP-207ENST00000556831 SYNJ1O43426 1573 aa24.68■■□□□ 1.54
SLIRP-207ENST00000556831 WDR97A6NE52 1622 aa24.68■■□□□ 1.54
SLIRP-207ENST00000556831 BIVM-ERCC5R4GMW8 1640 aa24.61■■□□□ 1.53
SLIRP-207ENST00000556831 WRNQ14191 1432 aaPredicted RBP eCLIP24.61■■□□□ 1.53
SLIRP-207ENST00000556831 TOP2BQ02880 1626 aa24.6■■□□□ 1.53
SLIRP-207ENST00000556831 CHD1O14646 1710 aa24.58■■□□□ 1.53
SLIRP-207ENST00000556831 SNAPC4Q5SXM2 1469 aa24.53■■□□□ 1.52
SLIRP-207ENST00000556831 ABCA10Q8WWZ4 1543 aa24.52■■□□□ 1.52
SLIRP-207ENST00000556831 ILDR1Q86SU0 546 aaPredicted RBP24.51■■□□□ 1.51
SLIRP-207ENST00000556831 ABCA5Q8WWZ7 1642 aa24.5■■□□□ 1.51
SLIRP-207ENST00000556831 CYB5RLQ6IPT4 315 aa24.5■■□□□ 1.51
SLIRP-207ENST00000556831 PBRM1Q86U86 1689 aa24.5■■□□□ 1.51
SLIRP-207ENST00000556831 GAPVD1Q14C86 1478 aa24.46■■□□□ 1.51
SLIRP-207ENST00000556831 GRIN2BQ13224 1484 aa24.45■■□□□ 1.51
SLIRP-207ENST00000556831 FBLN2P98095 1184 aa24.45■■□□□ 1.5
SLIRP-207ENST00000556831 MAGI1Q96QZ7 1491 aaPredicted RBP24.38■■□□□ 1.49
SLIRP-207ENST00000556831 SYNJ2O15056 1496 aa24.32■■□□□ 1.48
SLIRP-207ENST00000556831 ARAP1Q96P48 1450 aa24.32■■□□□ 1.48
SLIRP-207ENST00000556831 CHMP7Q8WUX9 453 aaPredicted RBP24.29■■□□□ 1.48
SLIRP-207ENST00000556831 ADAMTS12P58397 1594 aa24.28■■□□□ 1.48
SLIRP-207ENST00000556831 CLASP1Q7Z460 1538 aa24.27■■□□□ 1.48
SLIRP-207ENST00000556831 ERICH3Q5RHP9 1530 aa24.2■■□□□ 1.46
SLIRP-207ENST00000556831 GRIN2AQ12879 1464 aa24.19■■□□□ 1.46
SLIRP-207ENST00000556831 CEP170Q5SW79 1584 aa24.15■■□□□ 1.46
SLIRP-207ENST00000556831 FHAD1B1AJZ9 1412 aa24.14■■□□□ 1.45
SLIRP-207ENST00000556831 NUP160Q12769 1436 aa24.08■■□□□ 1.44
SLIRP-207ENST00000556831 IGF1RP08069 1367 aa24.05■■□□□ 1.44
SLIRP-207ENST00000556831 ERCC6L2Q5T890 1561 aa24.05■■□□□ 1.44
SLIRP-207ENST00000556831 KIF27Q86VH2 1401 aa24.05■■□□□ 1.44
SLIRP-207ENST00000556831 RUSC2Q8N2Y8 1516 aa24.02■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms