RNA–Protein interactions for RNA: ENST00000556778.5

PRKCH-222, Transcript of protein kinase C eta, humanhuman

TSL 4

Gene PRKCH, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-222ENST00000556778 AEBP2Q6ZN18 517 aaPredicted RBP23.88■■□□□ 1.41
PRKCH-222ENST00000556778 CHIC1Q5VXU3 224 aa23.07■■□□□ 1.28
PRKCH-222ENST00000556778 NISCHQ9Y2I1 1504 aa21.17■□□□□ 0.98
PRKCH-222ENST00000556778 PHF23Q9BUL5 403 aaPredicted RBP20.29■□□□□ 0.84
PRKCH-222ENST00000556778 SENP3Q9H4L4 574 aaPredicted RBP20.23■□□□□ 0.83
PRKCH-222ENST00000556778 FOXD1Q16676 465 aa18.83■□□□□ 0.6
PRKCH-222ENST00000556778 PLPPR3Q6T4P5 718 aa18.6■□□□□ 0.57
PRKCH-222ENST00000556778 CCDC180Q9P1Z9 1646 aa18.57■□□□□ 0.56
PRKCH-222ENST00000556778 ABCC9O60706 1549 aa18.4■□□□□ 0.54
PRKCH-222ENST00000556778 PPP6R1Q9UPN7 881 aa17.96■□□□□ 0.47
PRKCH-222ENST00000556778 ADRA2BP18089 450 aa17.91■□□□□ 0.46
PRKCH-222ENST00000556778 DCAF8L2P0C7V8 631 aa17.89■□□□□ 0.45
PRKCH-222ENST00000556778 PIAS4Q8N2W9 510 aaPredicted RBP17.69■□□□□ 0.42
PRKCH-222ENST00000556778 ZCCHC6Q5VYS8 1495 aaKnown RBP17.63■□□□□ 0.41
PRKCH-222ENST00000556778 NACADO15069 1562 aa17.55■□□□□ 0.4
PRKCH-222ENST00000556778 RB1CC1Q8TDY2 1594 aa17.55■□□□□ 0.4
PRKCH-222ENST00000556778 MYO15BQ96JP2 1530 aa17.44■□□□□ 0.38
PRKCH-222ENST00000556778 DCAF1Q9Y4B6 1507 aa17.42■□□□□ 0.38
PRKCH-222ENST00000556778 MSH5O43196 834 aa17.41■□□□□ 0.38
PRKCH-222ENST00000556778 PABPN1Q86U42 306 aaKnown RBP eCLIP17.34■□□□□ 0.37
PRKCH-222ENST00000556778 SCRIBQ14160 1630 aa17.14■□□□□ 0.33
PRKCH-222ENST00000556778 BICRAQ9NZM4 1560 aa17.11■□□□□ 0.33
PRKCH-222ENST00000556778 UNC13AQ9UPW8 1703 aa17.07■□□□□ 0.32
PRKCH-222ENST00000556778 DNAJC5BQ9UF47 199 aa16.99■□□□□ 0.31
PRKCH-222ENST00000556778 SHROOM4Q9ULL8 1493 aa16.98■□□□□ 0.31
PRKCH-222ENST00000556778 EIF4G1Q04637 1599 aaKnown RBP16.62■□□□□ 0.25
PRKCH-222ENST00000556778 CECR2Q9BXF3 1484 aa16.61■□□□□ 0.25
PRKCH-222ENST00000556778 CC2D2AQ9P2K1 1620 aa16.54■□□□□ 0.24
PRKCH-222ENST00000556778 MROH2BQ7Z745 1585 aa16.38■□□□□ 0.21
PRKCH-222ENST00000556778 PPP4R3CPQ6ZMV5 832 aa16.37■□□□□ 0.21
PRKCH-222ENST00000556778 SMARCA4P51532 1647 aa16.35■□□□□ 0.21
PRKCH-222ENST00000556778 ATAD2BQ9ULI0 1458 aa16.34■□□□□ 0.21
PRKCH-222ENST00000556778 BAZ1AQ9NRL2 1556 aaPredicted RBP16.34■□□□□ 0.21
PRKCH-222ENST00000556778 MAPK8IP2Q13387 824 aaPredicted RBP16.32■□□□□ 0.2
PRKCH-222ENST00000556778 SCAF1Q9H7N4 1312 aaKnown RBP16.3■□□□□ 0.2
PRKCH-222ENST00000556778 NCAPD3P42695 1498 aa16.29■□□□□ 0.2
PRKCH-222ENST00000556778 POTEDQ86YR6 584 aa16.27■□□□□ 0.2
PRKCH-222ENST00000556778 RSF1Q96T23 1441 aaPredicted RBP16.24■□□□□ 0.19
PRKCH-222ENST00000556778 SMARCA2P51531 1590 aa16.2■□□□□ 0.18
PRKCH-222ENST00000556778 BAZ1BQ9UIG0 1483 aaKnown RBP16.16■□□□□ 0.18
PRKCH-222ENST00000556778 PEG3Q9GZU2 1588 aa16.16■□□□□ 0.18
PRKCH-222ENST00000556778 WIZO95785 1651 aa16.14■□□□□ 0.18
PRKCH-222ENST00000556778 DMRT2Q9Y5R5 561 aa16.14■□□□□ 0.17
PRKCH-222ENST00000556778 HMGXB3Q12766 1538 aa16.11■□□□□ 0.17
PRKCH-222ENST00000556778 SUPT5HO00267 1087 aaKnown RBP16.02■□□□□ 0.16
PRKCH-222ENST00000556778 NESP48681 1621 aa15.96■□□□□ 0.15
PRKCH-222ENST00000556778 CNKSR2Q8WXI2 1034 aa15.95■□□□□ 0.14
PRKCH-222ENST00000556778 TOP2AP11388 1531 aaKnown RBP15.94■□□□□ 0.14
PRKCH-222ENST00000556778 CCDC88BA6NC98 1476 aa15.86■□□□□ 0.13
PRKCH-222ENST00000556778 CADPSQ9ULU8 1353 aa15.86■□□□□ 0.13
PRKCH-222ENST00000556778 NCBP3Q53F19 620 aaKnown RBP15.82■□□□□ 0.12
PRKCH-222ENST00000556778 ERCC6Q03468 1493 aa15.78■□□□□ 0.12
PRKCH-222ENST00000556778 KCNA4P22459 653 aa15.78■□□□□ 0.12
PRKCH-222ENST00000556778 CFTRP13569 1480 aa15.75■□□□□ 0.11
PRKCH-222ENST00000556778 LAMC3Q9Y6N6 1575 aa15.74■□□□□ 0.11
PRKCH-222ENST00000556778 PDS5BQ9NTI5 1447 aa15.72■□□□□ 0.11
PRKCH-222ENST00000556778 HOXD11P31277 338 aaPredicted RBP15.72■□□□□ 0.11
PRKCH-222ENST00000556778 RNF216Q9NWF9 866 aaPredicted RBP15.71■□□□□ 0.11
PRKCH-222ENST00000556778 NPM3O75607 178 aaKnown RBP15.67■□□□□ 0.1
PRKCH-222ENST00000556778 FANCD2Q9BXW9 1451 aa15.65■□□□□ 0.1
PRKCH-222ENST00000556778 KIF21AQ7Z4S6 1674 aa15.58■□□□□ 0.08
PRKCH-222ENST00000556778 CEP164Q9UPV0 1460 aa15.58■□□□□ 0.08
PRKCH-222ENST00000556778 MRC2Q9UBG0 1479 aa15.55■□□□□ 0.08
PRKCH-222ENST00000556778 THOC2Q8NI27 1593 aaKnown RBP15.53■□□□□ 0.08
PRKCH-222ENST00000556778 URB2Q14146 1524 aaKnown RBP15.51■□□□□ 0.07
PRKCH-222ENST00000556778 CUX2O14529 1486 aa15.51■□□□□ 0.07
PRKCH-222ENST00000556778 WDR62O43379 1518 aa15.47■□□□□ 0.07
PRKCH-222ENST00000556778 TOPBP1Q92547 1522 aa15.39■□□□□ 0.05
PRKCH-222ENST00000556778 DCAF8L1A6NGE4 600 aa15.38■□□□□ 0.05
PRKCH-222ENST00000556778 PRDM2Q13029 1718 aa15.33■□□□□ 0.04
PRKCH-222ENST00000556778 CUX1P39880 1505 aa15.33■□□□□ 0.04
PRKCH-222ENST00000556778 DNMBPQ6XZF7 1577 aa15.32■□□□□ 0.04
PRKCH-222ENST00000556778 ABCC8Q09428 1581 aa15.3■□□□□ 0.04
PRKCH-222ENST00000556778 RAD54L2Q9Y4B4 1467 aa15.3■□□□□ 0.04
PRKCH-222ENST00000556778 ZNF608Q9ULD9 1512 aaPredicted RBP15.28■□□□□ 0.04
PRKCH-222ENST00000556778 POLA1P09884 1462 aaPredicted RBP15.28■□□□□ 0.04
PRKCH-222ENST00000556778 SOGA1O94964 1423 aa15.27■□□□□ 0.04
PRKCH-222ENST00000556778 WRNQ14191 1432 aaPredicted RBP eCLIP15.26■□□□□ 0.03
PRKCH-222ENST00000556778 FGD5Q6ZNL6 1462 aa15.26■□□□□ 0.03
PRKCH-222ENST00000556778 IFT140Q96RY7 1462 aa15.26■□□□□ 0.03
PRKCH-222ENST00000556778 TDRD9Q8NDG6 1382 aaKnown RBP15.24■□□□□ 0.03
PRKCH-222ENST00000556778 AQRO60306 1485 aaKnown RBP eCLIP15.23■□□□□ 0.03
PRKCH-222ENST00000556778 SYNJ1O43426 1573 aa15.2■□□□□ 0.02
PRKCH-222ENST00000556778 TARBP1Q13395 1621 aaKnown RBP15.17■□□□□ 0.02
PRKCH-222ENST00000556778 TOP2BQ02880 1626 aa15.14■□□□□ 0.01
PRKCH-222ENST00000556778 DNAJC5Q9H3Z4 198 aa15.12■□□□□ 0.01
PRKCH-222ENST00000556778 EIF4G3O43432 1585 aaKnown RBP15.08■□□□□ 0
PRKCH-222ENST00000556778 BIVM-ERCC5R4GMW8 1640 aa15.08■□□□□ 0
PRKCH-222ENST00000556778 FBLN2P98095 1184 aa15.08■□□□□ 0
PRKCH-222ENST00000556778 ABCA10Q8WWZ4 1543 aa15.07■□□□□ 0
PRKCH-222ENST00000556778 TRIM41Q8WV44 630 aa15.06■□□□□ 0
PRKCH-222ENST00000556778 GAPVD1Q14C86 1478 aa15.04■□□□□ -0
PRKCH-222ENST00000556778 OSCARQ8IYS5 282 aa15.03■□□□□ -0
PRKCH-222ENST00000556778 GRIN2BQ13224 1484 aa15.01□□□□□ -0.01
PRKCH-222ENST00000556778 SNAPC4Q5SXM2 1469 aa15.01□□□□□ -0.01
PRKCH-222ENST00000556778 CHMP7Q8WUX9 453 aaPredicted RBP14.99□□□□□ -0.01
PRKCH-222ENST00000556778 WDR97A6NE52 1622 aa14.98□□□□□ -0.01
PRKCH-222ENST00000556778 ABCA5Q8WWZ7 1642 aa14.95□□□□□ -0.02
PRKCH-222ENST00000556778 SLC4A1APQ9BWU0 796 aaKnown RBP14.95□□□□□ -0.02
PRKCH-222ENST00000556778 RUSC2Q8N2Y8 1516 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms