RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 NISCHQ9Y2I1 1504 aa25.73■■□□□ 1.71
SHMT2-224ENST00000556737 CCDC180Q9P1Z9 1646 aa23.03■■□□□ 1.28
SHMT2-224ENST00000556737 ABCC9O60706 1549 aa22.61■■□□□ 1.21
SHMT2-224ENST00000556737 RB1CC1Q8TDY2 1594 aa21.7■■□□□ 1.06
SHMT2-224ENST00000556737 NACADO15069 1562 aa21.62■■□□□ 1.05
SHMT2-224ENST00000556737 MYO15BQ96JP2 1530 aa21.46■■□□□ 1.03
SHMT2-224ENST00000556737 ZCCHC6Q5VYS8 1495 aaKnown RBP21.43■■□□□ 1.02
SHMT2-224ENST00000556737 DCAF8L2P0C7V8 631 aa21.33■■□□□ 1.01
SHMT2-224ENST00000556737 DCAF1Q9Y4B6 1507 aa21.3■■□□□ 1
SHMT2-224ENST00000556737 UNC13AQ9UPW8 1703 aa21.3■■□□□ 1
SHMT2-224ENST00000556737 BICRAQ9NZM4 1560 aa21.11■□□□□ 0.97
SHMT2-224ENST00000556737 PABPN1Q86U42 306 aaKnown RBP eCLIP21.01■□□□□ 0.95
SHMT2-224ENST00000556737 SCRIBQ14160 1630 aa20.95■□□□□ 0.94
SHMT2-224ENST00000556737 DNAJC5BQ9UF47 199 aa20.89■□□□□ 0.93
SHMT2-224ENST00000556737 SHROOM4Q9ULL8 1493 aa20.85■□□□□ 0.93
SHMT2-224ENST00000556737 EIF4G1Q04637 1599 aaKnown RBP20.54■□□□□ 0.88
SHMT2-224ENST00000556737 CC2D2AQ9P2K1 1620 aa20.49■□□□□ 0.87
SHMT2-224ENST00000556737 CECR2Q9BXF3 1484 aa20.33■□□□□ 0.85
SHMT2-224ENST00000556737 SMARCA4P51532 1647 aa20.04■□□□□ 0.8
SHMT2-224ENST00000556737 BAZ1AQ9NRL2 1556 aaPredicted RBP19.95■□□□□ 0.78
SHMT2-224ENST00000556737 NCAPD3P42695 1498 aa19.93■□□□□ 0.78
SHMT2-224ENST00000556737 ATAD2BQ9ULI0 1458 aa19.92■□□□□ 0.78
SHMT2-224ENST00000556737 SMARCA2P51531 1590 aa19.89■□□□□ 0.77
SHMT2-224ENST00000556737 HMGXB3Q12766 1538 aa19.88■□□□□ 0.77
SHMT2-224ENST00000556737 PEG3Q9GZU2 1588 aa19.87■□□□□ 0.77
SHMT2-224ENST00000556737 MROH2BQ7Z745 1585 aa19.83■□□□□ 0.77
SHMT2-224ENST00000556737 BAZ1BQ9UIG0 1483 aaKnown RBP19.73■□□□□ 0.75
SHMT2-224ENST00000556737 WIZO95785 1651 aa19.62■□□□□ 0.73
SHMT2-224ENST00000556737 NESP48681 1621 aa19.54■□□□□ 0.72
SHMT2-224ENST00000556737 RSF1Q96T23 1441 aaPredicted RBP19.5■□□□□ 0.71
SHMT2-224ENST00000556737 LAMC3Q9Y6N6 1575 aa19.47■□□□□ 0.71
SHMT2-224ENST00000556737 ERCC6Q03468 1493 aa19.47■□□□□ 0.71
SHMT2-224ENST00000556737 TOP2AP11388 1531 aaKnown RBP19.41■□□□□ 0.7
SHMT2-224ENST00000556737 CUX2O14529 1486 aa19.39■□□□□ 0.69
SHMT2-224ENST00000556737 THOC2Q8NI27 1593 aaKnown RBP19.36■□□□□ 0.69
SHMT2-224ENST00000556737 KIF21AQ7Z4S6 1674 aa19.36■□□□□ 0.69
SHMT2-224ENST00000556737 CADPSQ9ULU8 1353 aa19.31■□□□□ 0.68
SHMT2-224ENST00000556737 PDS5BQ9NTI5 1447 aa19.26■□□□□ 0.67
SHMT2-224ENST00000556737 CFTRP13569 1480 aa19.2■□□□□ 0.66
SHMT2-224ENST00000556737 MRC2Q9UBG0 1479 aa19.15■□□□□ 0.66
SHMT2-224ENST00000556737 PRDM2Q13029 1718 aa19.14■□□□□ 0.66
SHMT2-224ENST00000556737 WDR62O43379 1518 aa19.13■□□□□ 0.65
SHMT2-224ENST00000556737 CCDC88BA6NC98 1476 aa19.12■□□□□ 0.65
SHMT2-224ENST00000556737 FANCD2Q9BXW9 1451 aa19.12■□□□□ 0.65
SHMT2-224ENST00000556737 CEP164Q9UPV0 1460 aa19.12■□□□□ 0.65
SHMT2-224ENST00000556737 URB2Q14146 1524 aaKnown RBP18.99■□□□□ 0.63
SHMT2-224ENST00000556737 DNAJC5Q9H3Z4 198 aa18.92■□□□□ 0.62
SHMT2-224ENST00000556737 TOPBP1Q92547 1522 aa18.81■□□□□ 0.6
SHMT2-224ENST00000556737 DNMBPQ6XZF7 1577 aa18.8■□□□□ 0.6
SHMT2-224ENST00000556737 ABCC8Q09428 1581 aa18.74■□□□□ 0.59
SHMT2-224ENST00000556737 IFT140Q96RY7 1462 aa18.71■□□□□ 0.59
SHMT2-224ENST00000556737 SUPT5HO00267 1087 aaKnown RBP18.71■□□□□ 0.59
SHMT2-224ENST00000556737 ZNF608Q9ULD9 1512 aaPredicted RBP18.68■□□□□ 0.58
SHMT2-224ENST00000556737 TARBP1Q13395 1621 aaKnown RBP18.67■□□□□ 0.58
SHMT2-224ENST00000556737 POLA1P09884 1462 aaPredicted RBP18.65■□□□□ 0.58
SHMT2-224ENST00000556737 EIF4G3O43432 1585 aaKnown RBP18.65■□□□□ 0.58
SHMT2-224ENST00000556737 CUX1P39880 1505 aa18.63■□□□□ 0.57
SHMT2-224ENST00000556737 FGD5Q6ZNL6 1462 aa18.57■□□□□ 0.56
SHMT2-224ENST00000556737 RAD54L2Q9Y4B4 1467 aa18.54■□□□□ 0.56
SHMT2-224ENST00000556737 WDR97A6NE52 1622 aa18.53■□□□□ 0.56
SHMT2-224ENST00000556737 AQRO60306 1485 aaKnown RBP eCLIP18.5■□□□□ 0.556e-8■■■■□ 22.1
SHMT2-224ENST00000556737 SOGA1O94964 1423 aa18.49■□□□□ 0.55
SHMT2-224ENST00000556737 BIVM-ERCC5R4GMW8 1640 aa18.45■□□□□ 0.54
SHMT2-224ENST00000556737 CHD1O14646 1710 aa18.45■□□□□ 0.54
SHMT2-224ENST00000556737 SYNJ1O43426 1573 aa18.42■□□□□ 0.54
SHMT2-224ENST00000556737 TOP2BQ02880 1626 aa18.42■□□□□ 0.54
SHMT2-224ENST00000556737 OSCARQ8IYS5 282 aa18.41■□□□□ 0.54
SHMT2-224ENST00000556737 TDRD9Q8NDG6 1382 aaKnown RBP18.41■□□□□ 0.54
SHMT2-224ENST00000556737 ABCA5Q8WWZ7 1642 aa18.39■□□□□ 0.53
SHMT2-224ENST00000556737 PBRM1Q86U86 1689 aa18.38■□□□□ 0.53
SHMT2-224ENST00000556737 SNAPC4Q5SXM2 1469 aa18.38■□□□□ 0.53
SHMT2-224ENST00000556737 ABCA10Q8WWZ4 1543 aa18.38■□□□□ 0.53
SHMT2-224ENST00000556737 WRNQ14191 1432 aaPredicted RBP eCLIP18.37■□□□□ 0.53
SHMT2-224ENST00000556737 GRIN2BQ13224 1484 aa18.33■□□□□ 0.53
SHMT2-224ENST00000556737 MAGI1Q96QZ7 1491 aaPredicted RBP18.33■□□□□ 0.53
SHMT2-224ENST00000556737 RIMBP3CA6NJZ7 1639 aa18.31■□□□□ 0.52
SHMT2-224ENST00000556737 RIMBP3BA6NNM3 1639 aa18.31■□□□□ 0.52
SHMT2-224ENST00000556737 RIMBP3Q9UFD9 1639 aa18.31■□□□□ 0.52
SHMT2-224ENST00000556737 GAPVD1Q14C86 1478 aa18.3■□□□□ 0.52
SHMT2-224ENST00000556737 ARHGEF11O15085 1522 aa18.26■□□□□ 0.51
SHMT2-224ENST00000556737 SYNJ2O15056 1496 aa18.26■□□□□ 0.51
SHMT2-224ENST00000556737 CLASP1Q7Z460 1538 aa18.25■□□□□ 0.51
SHMT2-224ENST00000556737 ADAMTS12P58397 1594 aa18.22■□□□□ 0.51
SHMT2-224ENST00000556737 FBLN2P98095 1184 aa18.19■□□□□ 0.5
SHMT2-224ENST00000556737 TRIM41Q8WV44 630 aa18.17■□□□□ 0.5
SHMT2-224ENST00000556737 ERICH3Q5RHP9 1530 aa18.16■□□□□ 0.5
SHMT2-224ENST00000556737 CHMP7Q8WUX9 453 aaPredicted RBP18.13■□□□□ 0.49
SHMT2-224ENST00000556737 GRIN2AQ12879 1464 aa18.13■□□□□ 0.49
SHMT2-224ENST00000556737 ARAP1Q96P48 1450 aa18.12■□□□□ 0.49
SHMT2-224ENST00000556737 CEP170Q5SW79 1584 aa18.09■□□□□ 0.49
SHMT2-224ENST00000556737 FHAD1B1AJZ9 1412 aa18.08■□□□□ 0.49
SHMT2-224ENST00000556737 NUP160Q12769 1436 aa18.06■□□□□ 0.48
SHMT2-224ENST00000556737 SHROOM2Q13796 1616 aa18.01■□□□□ 0.47
SHMT2-224ENST00000556737 CUL7Q14999 1698 aa17.99■□□□□ 0.47
SHMT2-224ENST00000556737 RUSC2Q8N2Y8 1516 aa17.98■□□□□ 0.47
SHMT2-224ENST00000556737 ERCC6L2Q5T890 1561 aa17.97■□□□□ 0.47
SHMT2-224ENST00000556737 KIF27Q86VH2 1401 aa17.97■□□□□ 0.47
SHMT2-224ENST00000556737 CYB5RLQ6IPT4 315 aa17.95■□□□□ 0.46
SHMT2-224ENST00000556737 IGF1RP08069 1367 aa17.92■□□□□ 0.46
SHMT2-224ENST00000556737 KIAA0586Q9BVV6 1533 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms