RNA–Protein interactions for RNA: ENST00000556712.5

SNX6-208, Transcript of sorting nexin 6, humanhuman

TSL 5

Gene SNX6, Length 851 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-208ENST00000556712 NISCHQ9Y2I1 1504 aa25.5■■□□□ 1.67
SNX6-208ENST00000556712 CCDC180Q9P1Z9 1646 aa22.75■■□□□ 1.23
SNX6-208ENST00000556712 ABCC9O60706 1549 aa22.35■■□□□ 1.17
SNX6-208ENST00000556712 RB1CC1Q8TDY2 1594 aa21.42■■□□□ 1.02
SNX6-208ENST00000556712 NACADO15069 1562 aa21.35■■□□□ 1.01
SNX6-208ENST00000556712 DCAF8L2P0C7V8 631 aa21.29■■□□□ 1
SNX6-208ENST00000556712 ZCCHC6Q5VYS8 1495 aaKnown RBP21.25■□□□□ 0.99
SNX6-208ENST00000556712 MYO15BQ96JP2 1530 aa21.15■□□□□ 0.98
SNX6-208ENST00000556712 UNC13AQ9UPW8 1703 aa21.06■□□□□ 0.96
SNX6-208ENST00000556712 DCAF1Q9Y4B6 1507 aa21.05■□□□□ 0.96
SNX6-208ENST00000556712 BICRAQ9NZM4 1560 aa20.83■□□□□ 0.92
SNX6-208ENST00000556712 PABPN1Q86U42 306 aaKnown RBP eCLIP20.82■□□□□ 0.92
SNX6-208ENST00000556712 SCRIBQ14160 1630 aa20.81■□□□□ 0.92
SNX6-208ENST00000556712 DNAJC5BQ9UF47 199 aa20.54■□□□□ 0.88
SNX6-208ENST00000556712 SHROOM4Q9ULL8 1493 aa20.5■□□□□ 0.87
SNX6-208ENST00000556712 EIF4G1Q04637 1599 aaKnown RBP20.27■□□□□ 0.84
SNX6-208ENST00000556712 CC2D2AQ9P2K1 1620 aa20.21■□□□□ 0.83
SNX6-208ENST00000556712 CECR2Q9BXF3 1484 aa20.05■□□□□ 0.8
SNX6-208ENST00000556712 SMARCA4P51532 1647 aa19.85■□□□□ 0.77
SNX6-208ENST00000556712 BAZ1AQ9NRL2 1556 aaPredicted RBP19.77■□□□□ 0.76
SNX6-208ENST00000556712 ATAD2BQ9ULI0 1458 aa19.71■□□□□ 0.75
SNX6-208ENST00000556712 MROH2BQ7Z745 1585 aa19.69■□□□□ 0.74
SNX6-208ENST00000556712 SMARCA2P51531 1590 aa19.68■□□□□ 0.74
SNX6-208ENST00000556712 NCAPD3P42695 1498 aa19.67■□□□□ 0.74
SNX6-208ENST00000556712 HMGXB3Q12766 1538 aa19.63■□□□□ 0.73
SNX6-208ENST00000556712 PEG3Q9GZU2 1588 aa19.61■□□□□ 0.73
SNX6-208ENST00000556712 BAZ1BQ9UIG0 1483 aaKnown RBP19.56■□□□□ 0.72
SNX6-208ENST00000556712 WIZO95785 1651 aa19.51■□□□□ 0.71
SNX6-208ENST00000556712 RSF1Q96T23 1441 aaPredicted RBP19.38■□□□□ 0.69
SNX6-208ENST00000556712 NESP48681 1621 aa19.33■□□□□ 0.69
SNX6-208ENST00000556712 TOP2AP11388 1531 aaKnown RBP19.25■□□□□ 0.67
SNX6-208ENST00000556712 ERCC6Q03468 1493 aa19.24■□□□□ 0.67
SNX6-208ENST00000556712 LAMC3Q9Y6N6 1575 aa19.22■□□□□ 0.67
SNX6-208ENST00000556712 KIF21AQ7Z4S6 1674 aa19.16■□□□□ 0.66
SNX6-208ENST00000556712 CADPSQ9ULU8 1353 aa19.09■□□□□ 0.65
SNX6-208ENST00000556712 THOC2Q8NI27 1593 aaKnown RBP19.09■□□□□ 0.65
SNX6-208ENST00000556712 CUX2O14529 1486 aa19.04■□□□□ 0.64
SNX6-208ENST00000556712 PDS5BQ9NTI5 1447 aa19.03■□□□□ 0.64
SNX6-208ENST00000556712 CCDC88BA6NC98 1476 aa18.99■□□□□ 0.63
SNX6-208ENST00000556712 CFTRP13569 1480 aa18.99■□□□□ 0.63
SNX6-208ENST00000556712 PRDM2Q13029 1718 aa18.96■□□□□ 0.63
SNX6-208ENST00000556712 FANCD2Q9BXW9 1451 aa18.93■□□□□ 0.62
SNX6-208ENST00000556712 MRC2Q9UBG0 1479 aa18.91■□□□□ 0.62
SNX6-208ENST00000556712 CEP164Q9UPV0 1460 aa18.91■□□□□ 0.62
SNX6-208ENST00000556712 AEBP2Q6ZN18 517 aaPredicted RBP18.91■□□□□ 0.62
SNX6-208ENST00000556712 WDR62O43379 1518 aa18.87■□□□□ 0.61
SNX6-208ENST00000556712 SUPT5HO00267 1087 aaKnown RBP18.82■□□□□ 0.6
SNX6-208ENST00000556712 URB2Q14146 1524 aaKnown RBP18.78■□□□□ 0.6
SNX6-208ENST00000556712 TOPBP1Q92547 1522 aa18.63■□□□□ 0.57
SNX6-208ENST00000556712 DNMBPQ6XZF7 1577 aa18.61■□□□□ 0.57
SNX6-208ENST00000556712 ABCC8Q09428 1581 aa18.53■□□□□ 0.56
SNX6-208ENST00000556712 DNAJC5Q9H3Z4 198 aa18.5■□□□□ 0.55
SNX6-208ENST00000556712 IFT140Q96RY7 1462 aa18.5■□□□□ 0.55
SNX6-208ENST00000556712 CUX1P39880 1505 aa18.48■□□□□ 0.55
SNX6-208ENST00000556712 ZNF608Q9ULD9 1512 aaPredicted RBP18.48■□□□□ 0.55
SNX6-208ENST00000556712 POLA1P09884 1462 aaPredicted RBP18.46■□□□□ 0.55
SNX6-208ENST00000556712 TARBP1Q13395 1621 aaKnown RBP18.45■□□□□ 0.54
SNX6-208ENST00000556712 EIF4G3O43432 1585 aaKnown RBP18.44■□□□□ 0.54
SNX6-208ENST00000556712 FGD5Q6ZNL6 1462 aa18.42■□□□□ 0.54
SNX6-208ENST00000556712 RAD54L2Q9Y4B4 1467 aa18.4■□□□□ 0.54
SNX6-208ENST00000556712 WDR97A6NE52 1622 aa18.34■□□□□ 0.53
SNX6-208ENST00000556712 SOGA1O94964 1423 aa18.33■□□□□ 0.53
SNX6-208ENST00000556712 AQRO60306 1485 aaKnown RBP eCLIP18.33■□□□□ 0.521e-6■■■■■ 27.8
SNX6-208ENST00000556712 SYNJ1O43426 1573 aa18.32■□□□□ 0.52
SNX6-208ENST00000556712 BIVM-ERCC5R4GMW8 1640 aa18.31■□□□□ 0.52
SNX6-208ENST00000556712 TOP2BQ02880 1626 aa18.29■□□□□ 0.52
SNX6-208ENST00000556712 WRNQ14191 1432 aaPredicted RBP eCLIP18.28■□□□□ 0.52
SNX6-208ENST00000556712 TDRD9Q8NDG6 1382 aaKnown RBP18.27■□□□□ 0.51
SNX6-208ENST00000556712 CHD1O14646 1710 aa18.26■□□□□ 0.51
SNX6-208ENST00000556712 PBRM1Q86U86 1689 aa18.22■□□□□ 0.51
SNX6-208ENST00000556712 ABCA10Q8WWZ4 1543 aa18.2■□□□□ 0.5
SNX6-208ENST00000556712 SNAPC4Q5SXM2 1469 aa18.2■□□□□ 0.5
SNX6-208ENST00000556712 ABCA5Q8WWZ7 1642 aa18.2■□□□□ 0.5
SNX6-208ENST00000556712 OSCARQ8IYS5 282 aa18.16■□□□□ 0.5
SNX6-208ENST00000556712 GRIN2BQ13224 1484 aa18.14■□□□□ 0.5
SNX6-208ENST00000556712 GAPVD1Q14C86 1478 aa18.14■□□□□ 0.5
SNX6-208ENST00000556712 MAGI1Q96QZ7 1491 aaPredicted RBP18.11■□□□□ 0.49
SNX6-208ENST00000556712 FBLN2P98095 1184 aa18.09■□□□□ 0.49
SNX6-208ENST00000556712 SYNJ2O15056 1496 aa18.06■□□□□ 0.48
SNX6-208ENST00000556712 ADAMTS12P58397 1594 aa18.04■□□□□ 0.48
SNX6-208ENST00000556712 RIMBP3CA6NJZ7 1639 aa18.04■□□□□ 0.48
SNX6-208ENST00000556712 RIMBP3BA6NNM3 1639 aa18.04■□□□□ 0.48
SNX6-208ENST00000556712 RIMBP3Q9UFD9 1639 aa18.04■□□□□ 0.48
SNX6-208ENST00000556712 CHMP7Q8WUX9 453 aaPredicted RBP18■□□□□ 0.47
SNX6-208ENST00000556712 ARHGEF11O15085 1522 aa17.99■□□□□ 0.47
SNX6-208ENST00000556712 CLASP1Q7Z460 1538 aa17.99■□□□□ 0.47
SNX6-208ENST00000556712 ERICH3Q5RHP9 1530 aa17.98■□□□□ 0.47
SNX6-208ENST00000556712 GRIN2AQ12879 1464 aa17.95■□□□□ 0.46
SNX6-208ENST00000556712 TRIM41Q8WV44 630 aa17.93■□□□□ 0.46
SNX6-208ENST00000556712 FHAD1B1AJZ9 1412 aa17.91■□□□□ 0.46
SNX6-208ENST00000556712 CEP170Q5SW79 1584 aa17.91■□□□□ 0.46
SNX6-208ENST00000556712 CHIC1Q5VXU3 224 aa17.89■□□□□ 0.45
SNX6-208ENST00000556712 KIF27Q86VH2 1401 aa17.88■□□□□ 0.45
SNX6-208ENST00000556712 NUP160Q12769 1436 aa17.85■□□□□ 0.45
SNX6-208ENST00000556712 ARAP1Q96P48 1450 aa17.85■□□□□ 0.45
SNX6-208ENST00000556712 CUL7Q14999 1698 aa17.84■□□□□ 0.45
SNX6-208ENST00000556712 IGF1RP08069 1367 aa17.79■□□□□ 0.44
SNX6-208ENST00000556712 RUSC2Q8N2Y8 1516 aa17.78■□□□□ 0.44
SNX6-208ENST00000556712 SHROOM2Q13796 1616 aa17.78■□□□□ 0.44
SNX6-208ENST00000556712 ERCC6L2Q5T890 1561 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms