RNA–Protein interactions for RNA: ENST00000556343.1

ACTN1-218, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 274 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-218ENST00000556343 NISCHQ9Y2I1 1504 aa21.21■□□□□ 0.99
ACTN1-218ENST00000556343 CCDC180Q9P1Z9 1646 aa18.6■□□□□ 0.57
ACTN1-218ENST00000556343 ABCC9O60706 1549 aa17.86■□□□□ 0.45
ACTN1-218ENST00000556343 DCAF8L2P0C7V8 631 aa17.74■□□□□ 0.43
ACTN1-218ENST00000556343 ZCCHC6Q5VYS8 1495 aaKnown RBP17.73■□□□□ 0.43
ACTN1-218ENST00000556343 DCAF1Q9Y4B6 1507 aa17.58■□□□□ 0.41
ACTN1-218ENST00000556343 MYO15BQ96JP2 1530 aa17.51■□□□□ 0.39
ACTN1-218ENST00000556343 NACADO15069 1562 aa17.47■□□□□ 0.39
ACTN1-218ENST00000556343 RB1CC1Q8TDY2 1594 aa17.37■□□□□ 0.37
ACTN1-218ENST00000556343 SHROOM4Q9ULL8 1493 aa17.07■□□□□ 0.32
ACTN1-218ENST00000556343 SCRIBQ14160 1630 aa17.02■□□□□ 0.31
ACTN1-218ENST00000556343 PABPN1Q86U42 306 aaKnown RBP eCLIP16.83■□□□□ 0.28
ACTN1-218ENST00000556343 UNC13AQ9UPW8 1703 aa16.79■□□□□ 0.28
ACTN1-218ENST00000556343 BICRAQ9NZM4 1560 aa16.72■□□□□ 0.27
ACTN1-218ENST00000556343 CECR2Q9BXF3 1484 aa16.44■□□□□ 0.22
ACTN1-218ENST00000556343 BAZ1AQ9NRL2 1556 aaPredicted RBP16.43■□□□□ 0.22
ACTN1-218ENST00000556343 SUPT5HO00267 1087 aaKnown RBP16.38■□□□□ 0.21
ACTN1-218ENST00000556343 RSF1Q96T23 1441 aaPredicted RBP16.35■□□□□ 0.21
ACTN1-218ENST00000556343 SMARCA4P51532 1647 aa16.32■□□□□ 0.2
ACTN1-218ENST00000556343 MROH2BQ7Z745 1585 aa16.32■□□□□ 0.2
ACTN1-218ENST00000556343 EIF4G1Q04637 1599 aaKnown RBP16.31■□□□□ 0.2
ACTN1-218ENST00000556343 SMARCA2P51531 1590 aa16.2■□□□□ 0.18
ACTN1-218ENST00000556343 ATAD2BQ9ULI0 1458 aa16.19■□□□□ 0.18
ACTN1-218ENST00000556343 PEG3Q9GZU2 1588 aa16.17■□□□□ 0.18
ACTN1-218ENST00000556343 NCAPD3P42695 1498 aa16.13■□□□□ 0.17
ACTN1-218ENST00000556343 WIZO95785 1651 aa16.13■□□□□ 0.17
ACTN1-218ENST00000556343 CC2D2AQ9P2K1 1620 aa16.12■□□□□ 0.17
ACTN1-218ENST00000556343 BAZ1BQ9UIG0 1483 aaKnown RBP16.1■□□□□ 0.17
ACTN1-218ENST00000556343 TOP2AP11388 1531 aaKnown RBP16.04■□□□□ 0.16
ACTN1-218ENST00000556343 HMGXB3Q12766 1538 aa16.04■□□□□ 0.16
ACTN1-218ENST00000556343 DNAJC5BQ9UF47 199 aa15.98■□□□□ 0.15
ACTN1-218ENST00000556343 CCDC88BA6NC98 1476 aa15.89■□□□□ 0.13
ACTN1-218ENST00000556343 CADPSQ9ULU8 1353 aa15.73■□□□□ 0.11
ACTN1-218ENST00000556343 CFTRP13569 1480 aa15.67■□□□□ 0.1
ACTN1-218ENST00000556343 LAMC3Q9Y6N6 1575 aa15.6■□□□□ 0.09
ACTN1-218ENST00000556343 PDS5BQ9NTI5 1447 aa15.59■□□□□ 0.09
ACTN1-218ENST00000556343 NESP48681 1621 aa15.53■□□□□ 0.08
ACTN1-218ENST00000556343 CHIC1Q5VXU3 224 aa15.52■□□□□ 0.08
ACTN1-218ENST00000556343 TRIM41Q8WV44 630 aa15.5■□□□□ 0.07
ACTN1-218ENST00000556343 FANCD2Q9BXW9 1451 aa15.5■□□□□ 0.07
ACTN1-218ENST00000556343 CEP164Q9UPV0 1460 aa15.45■□□□□ 0.06
ACTN1-218ENST00000556343 PRDM2Q13029 1718 aa15.44■□□□□ 0.06
ACTN1-218ENST00000556343 WRNQ14191 1432 aaPredicted RBP eCLIP15.43■□□□□ 0.06
ACTN1-218ENST00000556343 ERCC6Q03468 1493 aa15.43■□□□□ 0.06
ACTN1-218ENST00000556343 ABCC8Q09428 1581 aa15.4■□□□□ 0.06
ACTN1-218ENST00000556343 MRC2Q9UBG0 1479 aa15.33■□□□□ 0.04
ACTN1-218ENST00000556343 KIF21AQ7Z4S6 1674 aa15.29■□□□□ 0.04
ACTN1-218ENST00000556343 DNMBPQ6XZF7 1577 aa15.28■□□□□ 0.04
ACTN1-218ENST00000556343 CUX1P39880 1505 aa15.28■□□□□ 0.04
ACTN1-218ENST00000556343 TOP2BQ02880 1626 aa15.28■□□□□ 0.04
ACTN1-218ENST00000556343 TOPBP1Q92547 1522 aa15.27■□□□□ 0.04
ACTN1-218ENST00000556343 URB2Q14146 1524 aaKnown RBP15.26■□□□□ 0.03
ACTN1-218ENST00000556343 SYNJ1O43426 1573 aa15.25■□□□□ 0.03
ACTN1-218ENST00000556343 BIVM-ERCC5R4GMW8 1640 aa15.23■□□□□ 0.03
ACTN1-218ENST00000556343 WDR62O43379 1518 aa15.21■□□□□ 0.03
ACTN1-218ENST00000556343 SOGA1O94964 1423 aa15.2■□□□□ 0.02
ACTN1-218ENST00000556343 FGD5Q6ZNL6 1462 aa15.2■□□□□ 0.02
ACTN1-218ENST00000556343 POLA1P09884 1462 aaPredicted RBP15.17■□□□□ 0.02
ACTN1-218ENST00000556343 EEA1Q15075 1411 aa15.16■□□□□ 0.02
ACTN1-218ENST00000556343 THOC2Q8NI27 1593 aaKnown RBP15.15■□□□□ 0.02
ACTN1-218ENST00000556343 IFT140Q96RY7 1462 aa15.13■□□□□ 0.01
ACTN1-218ENST00000556343 KIF27Q86VH2 1401 aa15.12■□□□□ 0.01
ACTN1-218ENST00000556343 FAM9AQ8IZU1 332 aaPredicted RBP15.11■□□□□ 0.01
ACTN1-218ENST00000556343 RAD54L2Q9Y4B4 1467 aa15.1■□□□□ 0.01
ACTN1-218ENST00000556343 CUX2O14529 1486 aa15.09■□□□□ 0.01
ACTN1-218ENST00000556343 ABCA10Q8WWZ4 1543 aa15.09■□□□□ 0.01
ACTN1-218ENST00000556343 CSRNP3Q8WYN3 585 aa15.09■□□□□ 0.01
ACTN1-218ENST00000556343 TDRD9Q8NDG6 1382 aaKnown RBP15.04■□□□□ -0
ACTN1-218ENST00000556343 TARBP1Q13395 1621 aaKnown RBP15□□□□□ -0.01
ACTN1-218ENST00000556343 GAPVD1Q14C86 1478 aa15□□□□□ -0.01
ACTN1-218ENST00000556343 WDR97A6NE52 1622 aa14.99□□□□□ -0.01
ACTN1-218ENST00000556343 RUSC2Q8N2Y8 1516 aa14.99□□□□□ -0.01
ACTN1-218ENST00000556343 IGF1RP08069 1367 aa14.98□□□□□ -0.01
ACTN1-218ENST00000556343 AQRO60306 1485 aaKnown RBP eCLIP14.96□□□□□ -0.01
ACTN1-218ENST00000556343 GRIN2BQ13224 1484 aa14.95□□□□□ -0.02
ACTN1-218ENST00000556343 ZNF608Q9ULD9 1512 aaPredicted RBP14.94□□□□□ -0.02
ACTN1-218ENST00000556343 CARMIL1Q5VZK9 1371 aa14.94□□□□□ -0.02
ACTN1-218ENST00000556343 ERICH3Q5RHP9 1530 aa14.92□□□□□ -0.02
ACTN1-218ENST00000556343 ABCA5Q8WWZ7 1642 aa14.91□□□□□ -0.02
ACTN1-218ENST00000556343 UBTFP17480 764 aaKnown RBP14.89□□□□□ -0.03
ACTN1-218ENST00000556343 LOC105371045A0A1W2PR82 267 aa14.88□□□□□ -0.03
ACTN1-218ENST00000556343 PRXQ9BXM0 1461 aa14.88□□□□□ -0.03
ACTN1-218ENST00000556343 EIF4G3O43432 1585 aaKnown RBP14.86□□□□□ -0.03
ACTN1-218ENST00000556343 FHAD1B1AJZ9 1412 aa14.86□□□□□ -0.03
ACTN1-218ENST00000556343 CHMP7Q8WUX9 453 aaPredicted RBP14.86□□□□□ -0.03
ACTN1-218ENST00000556343 EHMT2Q96KQ7 1210 aa14.86□□□□□ -0.03
ACTN1-218ENST00000556343 GOLGA3Q08378 1498 aa14.86□□□□□ -0.03
ACTN1-218ENST00000556343 RAPGEF2Q9Y4G8 1499 aa14.86□□□□□ -0.03
ACTN1-218ENST00000556343 CUL7Q14999 1698 aa14.84□□□□□ -0.03
ACTN1-218ENST00000556343 MAGI1Q96QZ7 1491 aaPredicted RBP14.84□□□□□ -0.03
ACTN1-218ENST00000556343 KIF21BO75037 1637 aa14.83□□□□□ -0.04
ACTN1-218ENST00000556343 SNAPC4Q5SXM2 1469 aa14.82□□□□□ -0.04
ACTN1-218ENST00000556343 FBLN2P98095 1184 aa14.82□□□□□ -0.04
ACTN1-218ENST00000556343 PBRM1Q86U86 1689 aa14.8□□□□□ -0.04
ACTN1-218ENST00000556343 TNIKQ9UKE5 1360 aa14.79□□□□□ -0.04
ACTN1-218ENST00000556343 SYNJ2O15056 1496 aa14.78□□□□□ -0.04
ACTN1-218ENST00000556343 ADAMTS12P58397 1594 aa14.75□□□□□ -0.05
ACTN1-218ENST00000556343 GRIN2AQ12879 1464 aa14.71□□□□□ -0.05
ACTN1-218ENST00000556343 RANGAP1P46060 587 aaPredicted RBP14.65□□□□□ -0.06
ACTN1-218ENST00000556343 OSCARQ8IYS5 282 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms