RNA–Protein interactions for RNA: ENST00000556175.1

SDR39U1-216, Transcript of short chain dehydrogenase/reductase family 39U member 1, humanhuman

TSL 3

Gene SDR39U1, Length 775 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDR39U1-216ENST00000556175 NISCHQ9Y2I1 1504 aa53.73■■■■■ 6.19
SDR39U1-216ENST00000556175 CCDC180Q9P1Z9 1646 aa48.2■■■■■ 5.31
SDR39U1-216ENST00000556175 ABCC9O60706 1549 aa47.84■■■■■ 5.25
SDR39U1-216ENST00000556175 RB1CC1Q8TDY2 1594 aa45.75■■■■■ 4.91
SDR39U1-216ENST00000556175 NACADO15069 1562 aa45.49■■■■■ 4.87
SDR39U1-216ENST00000556175 DCAF8L2P0C7V8 631 aa45.18■■■■■ 4.82
SDR39U1-216ENST00000556175 MYO15BQ96JP2 1530 aa44.98■■■■■ 4.79
SDR39U1-216ENST00000556175 UNC13AQ9UPW8 1703 aa44.62■■■■■ 4.73
SDR39U1-216ENST00000556175 ZCCHC6Q5VYS8 1495 aaKnown RBP44.6■■■■■ 4.73
SDR39U1-216ENST00000556175 DNAJC5BQ9UF47 199 aa44.56■■■■■ 4.72
SDR39U1-216ENST00000556175 PABPN1Q86U42 306 aaKnown RBP eCLIP44.53■■■■■ 4.72
SDR39U1-216ENST00000556175 DCAF1Q9Y4B6 1507 aa44.47■■■■■ 4.71
SDR39U1-216ENST00000556175 BICRAQ9NZM4 1560 aa44.31■■■■■ 4.68
SDR39U1-216ENST00000556175 SHROOM4Q9ULL8 1493 aa43.92■■■■■ 4.62
SDR39U1-216ENST00000556175 SCRIBQ14160 1630 aa43.84■■■■■ 4.61
SDR39U1-216ENST00000556175 CC2D2AQ9P2K1 1620 aa43.26■■■■■ 4.52
SDR39U1-216ENST00000556175 EIF4G1Q04637 1599 aaKnown RBP43.25■■■■■ 4.51
SDR39U1-216ENST00000556175 CECR2Q9BXF3 1484 aa43.12■■■■■ 4.49
SDR39U1-216ENST00000556175 NCAPD3P42695 1498 aa41.96■■■■■ 4.31
SDR39U1-216ENST00000556175 SMARCA4P51532 1647 aa41.88■■■■■ 4.3
SDR39U1-216ENST00000556175 ATAD2BQ9ULI0 1458 aa41.84■■■■■ 4.29
SDR39U1-216ENST00000556175 SMARCA2P51531 1590 aa41.8■■■■■ 4.28
SDR39U1-216ENST00000556175 BAZ1AQ9NRL2 1556 aaPredicted RBP41.75■■■■■ 4.27
SDR39U1-216ENST00000556175 HMGXB3Q12766 1538 aa41.71■■■■■ 4.27
SDR39U1-216ENST00000556175 PEG3Q9GZU2 1588 aa41.5■■■■■ 4.23
SDR39U1-216ENST00000556175 BAZ1BQ9UIG0 1483 aaKnown RBP41.49■■■■■ 4.23
SDR39U1-216ENST00000556175 ERCC6Q03468 1493 aa41.37■■■■■ 4.21
SDR39U1-216ENST00000556175 MROH2BQ7Z745 1585 aa41.36■■■■■ 4.21
SDR39U1-216ENST00000556175 CUX2O14529 1486 aa41.24■■■■■ 4.19
SDR39U1-216ENST00000556175 NESP48681 1621 aa41.14■■■■■ 4.18
SDR39U1-216ENST00000556175 LAMC3Q9Y6N6 1575 aa41.01■■■■■ 4.16
SDR39U1-216ENST00000556175 WIZO95785 1651 aa40.88■■■■■ 4.13
SDR39U1-216ENST00000556175 DNAJC5Q9H3Z4 198 aa40.85■■■■■ 4.13
SDR39U1-216ENST00000556175 PDS5BQ9NTI5 1447 aa40.77■■■■■ 4.12
SDR39U1-216ENST00000556175 THOC2Q8NI27 1593 aaKnown RBP40.74■■■■■ 4.11
SDR39U1-216ENST00000556175 CADPSQ9ULU8 1353 aa40.69■■■■■ 4.1
SDR39U1-216ENST00000556175 KIF21AQ7Z4S6 1674 aa40.67■■■■■ 4.1
SDR39U1-216ENST00000556175 RSF1Q96T23 1441 aaPredicted RBP40.6■■■■■ 4.09
SDR39U1-216ENST00000556175 TOP2AP11388 1531 aaKnown RBP40.46■■■■■ 4.07
SDR39U1-216ENST00000556175 MRC2Q9UBG0 1479 aa40.39■■■■■ 4.06
SDR39U1-216ENST00000556175 WDR62O43379 1518 aa40.28■■■■■ 4.04
SDR39U1-216ENST00000556175 CFTRP13569 1480 aa40.28■■■■■ 4.04
SDR39U1-216ENST00000556175 CEP164Q9UPV0 1460 aa40.27■■■■■ 4.04
SDR39U1-216ENST00000556175 FANCD2Q9BXW9 1451 aa40.22■■■■■ 4.03
SDR39U1-216ENST00000556175 CCDC88BA6NC98 1476 aa39.94■■■■□ 3.98
SDR39U1-216ENST00000556175 PRDM2Q13029 1718 aa39.94■■■■□ 3.98
SDR39U1-216ENST00000556175 URB2Q14146 1524 aaKnown RBP39.85■■■■□ 3.97
SDR39U1-216ENST00000556175 ABCC8Q09428 1581 aa39.5■■■■□ 3.91
SDR39U1-216ENST00000556175 TOPBP1Q92547 1522 aa39.48■■■■□ 3.91
SDR39U1-216ENST00000556175 IFT140Q96RY7 1462 aa39.47■■■■□ 3.91
SDR39U1-216ENST00000556175 DNMBPQ6XZF7 1577 aa39.4■■■■□ 3.9
SDR39U1-216ENST00000556175 OSCARQ8IYS5 282 aa39.34■■■■□ 3.89
SDR39U1-216ENST00000556175 ZNF608Q9ULD9 1512 aaPredicted RBP39.3■■■■□ 3.88
SDR39U1-216ENST00000556175 EIF4G3O43432 1585 aaKnown RBP39.16■■■■□ 3.86
SDR39U1-216ENST00000556175 TRIM41Q8WV44 630 aa39.13■■■■□ 3.85
SDR39U1-216ENST00000556175 TARBP1Q13395 1621 aaKnown RBP39.11■■■■□ 3.85
SDR39U1-216ENST00000556175 POLA1P09884 1462 aaPredicted RBP39.1■■■■□ 3.85
SDR39U1-216ENST00000556175 AQRO60306 1485 aaKnown RBP eCLIP38.98■■■■□ 3.83
SDR39U1-216ENST00000556175 SUPT5HO00267 1087 aaKnown RBP38.94■■■■□ 3.82
SDR39U1-216ENST00000556175 SOGA1O94964 1423 aa38.91■■■■□ 3.82
SDR39U1-216ENST00000556175 RAD54L2Q9Y4B4 1467 aa38.9■■■■□ 3.82
SDR39U1-216ENST00000556175 FGD5Q6ZNL6 1462 aa38.88■■■■□ 3.81
SDR39U1-216ENST00000556175 CUX1P39880 1505 aa38.86■■■■□ 3.81
SDR39U1-216ENST00000556175 WDR97A6NE52 1622 aa38.85■■■■□ 3.81
SDR39U1-216ENST00000556175 CHD1O14646 1710 aa38.8■■■■□ 3.8
SDR39U1-216ENST00000556175 RIMBP3CA6NJZ7 1639 aa38.79■■■■□ 3.8
SDR39U1-216ENST00000556175 RIMBP3BA6NNM3 1639 aa38.79■■■■□ 3.8
SDR39U1-216ENST00000556175 RIMBP3Q9UFD9 1639 aa38.79■■■■□ 3.8
SDR39U1-216ENST00000556175 TDRD9Q8NDG6 1382 aaKnown RBP38.77■■■■□ 3.8
SDR39U1-216ENST00000556175 ARHGEF11O15085 1522 aa38.71■■■■□ 3.79
SDR39U1-216ENST00000556175 FBLN2P98095 1184 aa38.68■■■■□ 3.78
SDR39U1-216ENST00000556175 SNAPC4Q5SXM2 1469 aa38.63■■■■□ 3.77
SDR39U1-216ENST00000556175 GRIN2BQ13224 1484 aa38.6■■■■□ 3.77
SDR39U1-216ENST00000556175 MAGI1Q96QZ7 1491 aaPredicted RBP38.59■■■■□ 3.77
SDR39U1-216ENST00000556175 ABCA10Q8WWZ4 1543 aa38.48■■■■□ 3.75
SDR39U1-216ENST00000556175 CHMP7Q8WUX9 453 aaPredicted RBP38.48■■■■□ 3.75
SDR39U1-216ENST00000556175 GAPVD1Q14C86 1478 aa38.47■■■■□ 3.75
SDR39U1-216ENST00000556175 PBRM1Q86U86 1689 aa38.44■■■■□ 3.74
SDR39U1-216ENST00000556175 SYNJ2O15056 1496 aa38.44■■■■□ 3.74
SDR39U1-216ENST00000556175 SYNJ1O43426 1573 aa38.43■■■■□ 3.74
SDR39U1-216ENST00000556175 ABCA5Q8WWZ7 1642 aa38.4■■■■□ 3.74
SDR39U1-216ENST00000556175 WRNQ14191 1432 aaPredicted RBP eCLIP38.38■■■■□ 3.74
SDR39U1-216ENST00000556175 CLASP1Q7Z460 1538 aa38.38■■■■□ 3.73
SDR39U1-216ENST00000556175 TOP2BQ02880 1626 aa38.36■■■■□ 3.73
SDR39U1-216ENST00000556175 BIVM-ERCC5R4GMW8 1640 aa38.35■■■■□ 3.73
SDR39U1-216ENST00000556175 CYB5RLQ6IPT4 315 aa38.35■■■■□ 3.73
SDR39U1-216ENST00000556175 ARAP1Q96P48 1450 aa38.32■■■■□ 3.72
SDR39U1-216ENST00000556175 ADAMTS12P58397 1594 aa38.1■■■■□ 3.69
SDR39U1-216ENST00000556175 GRIN2AQ12879 1464 aa38.08■■■■□ 3.69
SDR39U1-216ENST00000556175 ERICH3Q5RHP9 1530 aa38.02■■■■□ 3.68
SDR39U1-216ENST00000556175 FHAD1B1AJZ9 1412 aa38.01■■■■□ 3.68
SDR39U1-216ENST00000556175 NUP160Q12769 1436 aa37.94■■■■□ 3.66
SDR39U1-216ENST00000556175 CEP170Q5SW79 1584 aa37.9■■■■□ 3.66
SDR39U1-216ENST00000556175 TRHP20396 242 aaPredicted RBP37.88■■■■□ 3.65
SDR39U1-216ENST00000556175 SHROOM2Q13796 1616 aa37.76■■■■□ 3.63
SDR39U1-216ENST00000556175 ERCC6L2Q5T890 1561 aa37.72■■■■□ 3.63
SDR39U1-216ENST00000556175 KIF27Q86VH2 1401 aa37.63■■■■□ 3.61
SDR39U1-216ENST00000556175 RUSC2Q8N2Y8 1516 aa37.56■■■■□ 3.6
SDR39U1-216ENST00000556175 PRG4Q92954 1404 aaPredicted RBP37.54■■■■□ 3.6
SDR39U1-216ENST00000556175 CUL7Q14999 1698 aa37.54■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms