RNA–Protein interactions for RNA: ENST00000556020.1

GPHN-211, Transcript of gephyrin, humanhuman

TSL 4

Gene GPHN, Length 562 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-211ENST00000556020 NISCHQ9Y2I1 1504 aa42.52■■■■■ 4.4
GPHN-211ENST00000556020 CCDC180Q9P1Z9 1646 aa38.04■■■■□ 3.68
GPHN-211ENST00000556020 ABCC9O60706 1549 aa37.79■■■■□ 3.64
GPHN-211ENST00000556020 RB1CC1Q8TDY2 1594 aa36.06■■■■□ 3.36
GPHN-211ENST00000556020 DCAF8L2P0C7V8 631 aa35.89■■■■□ 3.34
GPHN-211ENST00000556020 NACADO15069 1562 aa35.85■■■■□ 3.33
GPHN-211ENST00000556020 MYO15BQ96JP2 1530 aa35.38■■■■□ 3.25
GPHN-211ENST00000556020 UNC13AQ9UPW8 1703 aa35.32■■■■□ 3.24
GPHN-211ENST00000556020 ZCCHC6Q5VYS8 1495 aaKnown RBP35.3■■■■□ 3.24
GPHN-211ENST00000556020 PABPN1Q86U42 306 aaKnown RBP eCLIP35.24■■■■□ 3.23
GPHN-211ENST00000556020 DNAJC5BQ9UF47 199 aa35.11■■■■□ 3.21
GPHN-211ENST00000556020 DCAF1Q9Y4B6 1507 aa35.07■■■■□ 3.21
GPHN-211ENST00000556020 BICRAQ9NZM4 1560 aa34.99■■■■□ 3.19
GPHN-211ENST00000556020 SCRIBQ14160 1630 aa34.77■■■■□ 3.16
GPHN-211ENST00000556020 SHROOM4Q9ULL8 1493 aa34.46■■■■□ 3.11
GPHN-211ENST00000556020 CC2D2AQ9P2K1 1620 aa34.13■■■■□ 3.05
GPHN-211ENST00000556020 EIF4G1Q04637 1599 aaKnown RBP34.12■■■■□ 3.05
GPHN-211ENST00000556020 CECR2Q9BXF3 1484 aa33.97■■■■□ 3.03
GPHN-211ENST00000556020 SMARCA4P51532 1647 aa33.14■■■□□ 2.9
GPHN-211ENST00000556020 NCAPD3P42695 1498 aa33.07■■■□□ 2.88
GPHN-211ENST00000556020 ATAD2BQ9ULI0 1458 aa33.05■■■□□ 2.88
GPHN-211ENST00000556020 BAZ1AQ9NRL2 1556 aaPredicted RBP33■■■□□ 2.87
GPHN-211ENST00000556020 SMARCA2P51531 1590 aa32.99■■■□□ 2.87
GPHN-211ENST00000556020 HMGXB3Q12766 1538 aa32.88■■■□□ 2.85
GPHN-211ENST00000556020 MROH2BQ7Z745 1585 aa32.8■■■□□ 2.84
GPHN-211ENST00000556020 BAZ1BQ9UIG0 1483 aaKnown RBP32.8■■■□□ 2.84
GPHN-211ENST00000556020 PEG3Q9GZU2 1588 aa32.74■■■□□ 2.83
GPHN-211ENST00000556020 ERCC6Q03468 1493 aa32.61■■■□□ 2.81
GPHN-211ENST00000556020 NESP48681 1621 aa32.55■■■□□ 2.8
GPHN-211ENST00000556020 WIZO95785 1651 aa32.46■■■□□ 2.79
GPHN-211ENST00000556020 CUX2O14529 1486 aa32.35■■■□□ 2.77
GPHN-211ENST00000556020 LAMC3Q9Y6N6 1575 aa32.32■■■□□ 2.77
GPHN-211ENST00000556020 RSF1Q96T23 1441 aaPredicted RBP32.2■■■□□ 2.75
GPHN-211ENST00000556020 KIF21AQ7Z4S6 1674 aa32.18■■■□□ 2.74
GPHN-211ENST00000556020 THOC2Q8NI27 1593 aaKnown RBP32.13■■■□□ 2.73
GPHN-211ENST00000556020 PDS5BQ9NTI5 1447 aa32.11■■■□□ 2.73
GPHN-211ENST00000556020 CADPSQ9ULU8 1353 aa32.11■■■□□ 2.73
GPHN-211ENST00000556020 TOP2AP11388 1531 aaKnown RBP32.03■■■□□ 2.72
GPHN-211ENST00000556020 DNAJC5Q9H3Z4 198 aa31.97■■■□□ 2.71
GPHN-211ENST00000556020 MRC2Q9UBG0 1479 aa31.84■■■□□ 2.69
GPHN-211ENST00000556020 CFTRP13569 1480 aa31.79■■■□□ 2.68
GPHN-211ENST00000556020 CEP164Q9UPV0 1460 aa31.79■■■□□ 2.68
GPHN-211ENST00000556020 FANCD2Q9BXW9 1451 aa31.78■■■□□ 2.68
GPHN-211ENST00000556020 WDR62O43379 1518 aa31.74■■■□□ 2.67
GPHN-211ENST00000556020 CCDC88BA6NC98 1476 aa31.66■■■□□ 2.66
GPHN-211ENST00000556020 PRDM2Q13029 1718 aa31.6■■■□□ 2.65
GPHN-211ENST00000556020 URB2Q14146 1524 aaKnown RBP31.49■■■□□ 2.63
GPHN-211ENST00000556020 TOPBP1Q92547 1522 aa31.21■■■□□ 2.59
GPHN-211ENST00000556020 DNMBPQ6XZF7 1577 aa31.13■■■□□ 2.57
GPHN-211ENST00000556020 SUPT5HO00267 1087 aaKnown RBP31.13■■■□□ 2.57
GPHN-211ENST00000556020 IFT140Q96RY7 1462 aa31.12■■■□□ 2.57
GPHN-211ENST00000556020 ABCC8Q09428 1581 aa31.12■■■□□ 2.57
GPHN-211ENST00000556020 ZNF608Q9ULD9 1512 aaPredicted RBP31.08■■■□□ 2.57
GPHN-211ENST00000556020 OSCARQ8IYS5 282 aa30.96■■■□□ 2.55
GPHN-211ENST00000556020 EIF4G3O43432 1585 aaKnown RBP30.94■■■□□ 2.54
GPHN-211ENST00000556020 POLA1P09884 1462 aaPredicted RBP30.91■■■□□ 2.54
GPHN-211ENST00000556020 TARBP1Q13395 1621 aaKnown RBP30.91■■■□□ 2.54
GPHN-211ENST00000556020 TRIM41Q8WV44 630 aa30.85■■■□□ 2.53
GPHN-211ENST00000556020 AQRO60306 1485 aaKnown RBP eCLIP30.84■■■□□ 2.53
GPHN-211ENST00000556020 RAD54L2Q9Y4B4 1467 aa30.82■■■□□ 2.53
GPHN-211ENST00000556020 CUX1P39880 1505 aa30.8■■■□□ 2.52
GPHN-211ENST00000556020 FGD5Q6ZNL6 1462 aa30.79■■■□□ 2.52
GPHN-211ENST00000556020 SOGA1O94964 1423 aa30.78■■■□□ 2.52
GPHN-211ENST00000556020 TDRD9Q8NDG6 1382 aaKnown RBP30.7■■■□□ 2.51
GPHN-211ENST00000556020 CHD1O14646 1710 aa30.69■■■□□ 2.5
GPHN-211ENST00000556020 FBLN2P98095 1184 aa30.63■■■□□ 2.49
GPHN-211ENST00000556020 RIMBP3CA6NJZ7 1639 aa30.58■■■□□ 2.49
GPHN-211ENST00000556020 RIMBP3BA6NNM3 1639 aa30.58■■■□□ 2.49
GPHN-211ENST00000556020 RIMBP3Q9UFD9 1639 aa30.58■■■□□ 2.49
GPHN-211ENST00000556020 WDR97A6NE52 1622 aa30.56■■■□□ 2.48
GPHN-211ENST00000556020 SNAPC4Q5SXM2 1469 aa30.54■■■□□ 2.48
GPHN-211ENST00000556020 ARHGEF11O15085 1522 aa30.48■■■□□ 2.47
GPHN-211ENST00000556020 GRIN2BQ13224 1484 aa30.46■■■□□ 2.47
GPHN-211ENST00000556020 PBRM1Q86U86 1689 aa30.45■■■□□ 2.46
GPHN-211ENST00000556020 MAGI1Q96QZ7 1491 aaPredicted RBP30.43■■■□□ 2.46
GPHN-211ENST00000556020 GAPVD1Q14C86 1478 aa30.42■■■□□ 2.46
GPHN-211ENST00000556020 ABCA10Q8WWZ4 1543 aa30.41■■■□□ 2.46
GPHN-211ENST00000556020 WRNQ14191 1432 aaPredicted RBP eCLIP30.4■■■□□ 2.46
GPHN-211ENST00000556020 CHMP7Q8WUX9 453 aaPredicted RBP30.4■■■□□ 2.46
GPHN-211ENST00000556020 BIVM-ERCC5R4GMW8 1640 aa30.4■■■□□ 2.46
GPHN-211ENST00000556020 SYNJ1O43426 1573 aa30.39■■■□□ 2.46
GPHN-211ENST00000556020 TOP2BQ02880 1626 aa30.38■■■□□ 2.45
GPHN-211ENST00000556020 ABCA5Q8WWZ7 1642 aa30.36■■■□□ 2.45
GPHN-211ENST00000556020 SYNJ2O15056 1496 aa30.32■■■□□ 2.44
GPHN-211ENST00000556020 CYB5RLQ6IPT4 315 aa30.26■■■□□ 2.43
GPHN-211ENST00000556020 CLASP1Q7Z460 1538 aa30.26■■■□□ 2.43
GPHN-211ENST00000556020 ARAP1Q96P48 1450 aa30.2■■■□□ 2.43
GPHN-211ENST00000556020 ADAMTS12P58397 1594 aa30.13■■■□□ 2.41
GPHN-211ENST00000556020 GRIN2AQ12879 1464 aa30.09■■■□□ 2.41
GPHN-211ENST00000556020 ERICH3Q5RHP9 1530 aa30.03■■■□□ 2.4
GPHN-211ENST00000556020 FHAD1B1AJZ9 1412 aa30.02■■■□□ 2.4
GPHN-211ENST00000556020 CEP170Q5SW79 1584 aa29.98■■■□□ 2.39
GPHN-211ENST00000556020 NUP160Q12769 1436 aa29.93■■■□□ 2.38
GPHN-211ENST00000556020 ERCC6L2Q5T890 1561 aa29.87■■■□□ 2.37
GPHN-211ENST00000556020 TRHP20396 242 aaPredicted RBP29.87■■■□□ 2.37
GPHN-211ENST00000556020 KIF27Q86VH2 1401 aa29.79■■■□□ 2.36
GPHN-211ENST00000556020 SHROOM2Q13796 1616 aa29.79■■■□□ 2.36
GPHN-211ENST00000556020 IGF1RP08069 1367 aa29.71■■■□□ 2.35
GPHN-211ENST00000556020 CUL7Q14999 1698 aa29.7■■■□□ 2.35
GPHN-211ENST00000556020 RUSC2Q8N2Y8 1516 aa29.7■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms