RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-223ENST00000555904 NISCHQ9Y2I1 1504 aa29.45■■■□□ 2.3
ABCD4-223ENST00000555904 CCDC180Q9P1Z9 1646 aa26.02■■□□□ 1.76
ABCD4-223ENST00000555904 ABCC9O60706 1549 aa25.05■■□□□ 1.6
ABCD4-223ENST00000555904 ZCCHC6Q5VYS8 1495 aaKnown RBP24.63■■□□□ 1.53
ABCD4-223ENST00000555904 DCAF8L2P0C7V8 631 aa24.5■■□□□ 1.51
ABCD4-223ENST00000555904 DCAF1Q9Y4B6 1507 aa24.4■■□□□ 1.5
ABCD4-223ENST00000555904 NACADO15069 1562 aa24.37■■□□□ 1.49
ABCD4-223ENST00000555904 MYO15BQ96JP2 1530 aa24.35■■□□□ 1.49
ABCD4-223ENST00000555904 RB1CC1Q8TDY2 1594 aa24.31■■□□□ 1.48
ABCD4-223ENST00000555904 SCRIBQ14160 1630 aa23.78■■□□□ 1.4
ABCD4-223ENST00000555904 UNC13AQ9UPW8 1703 aa23.64■■□□□ 1.38
ABCD4-223ENST00000555904 SHROOM4Q9ULL8 1493 aa23.56■■□□□ 1.36
ABCD4-223ENST00000555904 PABPN1Q86U42 306 aaKnown RBP eCLIP23.46■■□□□ 1.352e-6■■□□□ 13
ABCD4-223ENST00000555904 BICRAQ9NZM4 1560 aa23.46■■□□□ 1.35
ABCD4-223ENST00000555904 EIF4G1Q04637 1599 aaKnown RBP22.87■■□□□ 1.25
ABCD4-223ENST00000555904 CECR2Q9BXF3 1484 aa22.85■■□□□ 1.25
ABCD4-223ENST00000555904 BAZ1AQ9NRL2 1556 aaPredicted RBP22.84■■□□□ 1.25
ABCD4-223ENST00000555904 SMARCA4P51532 1647 aa22.77■■□□□ 1.24
ABCD4-223ENST00000555904 MROH2BQ7Z745 1585 aa22.68■■□□□ 1.22
ABCD4-223ENST00000555904 CC2D2AQ9P2K1 1620 aa22.66■■□□□ 1.22
ABCD4-223ENST00000555904 RSF1Q96T23 1441 aaPredicted RBP22.59■■□□□ 1.21
ABCD4-223ENST00000555904 SMARCA2P51531 1590 aa22.58■■□□□ 1.2
ABCD4-223ENST00000555904 PEG3Q9GZU2 1588 aa22.53■■□□□ 1.2
ABCD4-223ENST00000555904 ATAD2BQ9ULI0 1458 aa22.53■■□□□ 1.2
ABCD4-223ENST00000555904 DNAJC5BQ9UF47 199 aa22.49■■□□□ 1.19
ABCD4-223ENST00000555904 WIZO95785 1651 aa22.46■■□□□ 1.19
ABCD4-223ENST00000555904 NCAPD3P42695 1498 aa22.46■■□□□ 1.19
ABCD4-223ENST00000555904 BAZ1BQ9UIG0 1483 aaKnown RBP22.42■■□□□ 1.18
ABCD4-223ENST00000555904 HMGXB3Q12766 1538 aa22.41■■□□□ 1.18
ABCD4-223ENST00000555904 SUPT5HO00267 1087 aaKnown RBP22.4■■□□□ 1.18
ABCD4-223ENST00000555904 TOP2AP11388 1531 aaKnown RBP22.3■■□□□ 1.16
ABCD4-223ENST00000555904 CCDC88BA6NC98 1476 aa22■■□□□ 1.11
ABCD4-223ENST00000555904 CADPSQ9ULU8 1353 aa21.84■■□□□ 1.09
ABCD4-223ENST00000555904 LAMC3Q9Y6N6 1575 aa21.83■■□□□ 1.09
ABCD4-223ENST00000555904 CFTRP13569 1480 aa21.79■■□□□ 1.08
ABCD4-223ENST00000555904 NESP48681 1621 aa21.77■■□□□ 1.07
ABCD4-223ENST00000555904 PDS5BQ9NTI5 1447 aa21.69■■□□□ 1.06
ABCD4-223ENST00000555904 PRDM2Q13029 1718 aa21.64■■□□□ 1.06
ABCD4-223ENST00000555904 ERCC6Q03468 1493 aa21.63■■□□□ 1.05
ABCD4-223ENST00000555904 FANCD2Q9BXW9 1451 aa21.61■■□□□ 1.05
ABCD4-223ENST00000555904 CEP164Q9UPV0 1460 aa21.56■■□□□ 1.04
ABCD4-223ENST00000555904 KIF21AQ7Z4S6 1674 aa21.53■■□□□ 1.04
ABCD4-223ENST00000555904 MRC2Q9UBG0 1479 aa21.43■■□□□ 1.02
ABCD4-223ENST00000555904 ABCC8Q09428 1581 aa21.36■■□□□ 1.01
ABCD4-223ENST00000555904 THOC2Q8NI27 1593 aaKnown RBP21.36■■□□□ 1.01
ABCD4-223ENST00000555904 WRNQ14191 1432 aaPredicted RBP eCLIP21.34■■□□□ 1.01
ABCD4-223ENST00000555904 WDR62O43379 1518 aa21.32■■□□□ 1
ABCD4-223ENST00000555904 URB2Q14146 1524 aaKnown RBP21.32■■□□□ 1
ABCD4-223ENST00000555904 DNMBPQ6XZF7 1577 aa21.31■■□□□ 1
ABCD4-223ENST00000555904 TOPBP1Q92547 1522 aa21.29■■□□□ 1
ABCD4-223ENST00000555904 CUX1P39880 1505 aa21.27■■□□□ 1
ABCD4-223ENST00000555904 TOP2BQ02880 1626 aa21.22■□□□□ 0.99
ABCD4-223ENST00000555904 SYNJ1O43426 1573 aa21.22■□□□□ 0.99
ABCD4-223ENST00000555904 CUX2O14529 1486 aa21.2■□□□□ 0.98
ABCD4-223ENST00000555904 BIVM-ERCC5R4GMW8 1640 aa21.2■□□□□ 0.98
ABCD4-223ENST00000555904 FGD5Q6ZNL6 1462 aa21.16■□□□□ 0.98
ABCD4-223ENST00000555904 TRIM41Q8WV44 630 aa21.16■□□□□ 0.98
ABCD4-223ENST00000555904 POLA1P09884 1462 aaPredicted RBP21.13■□□□□ 0.97
ABCD4-223ENST00000555904 CHIC1Q5VXU3 224 aa21.1■□□□□ 0.97
ABCD4-223ENST00000555904 IFT140Q96RY7 1462 aa21.08■□□□□ 0.97
ABCD4-223ENST00000555904 SOGA1O94964 1423 aa21.08■□□□□ 0.97
ABCD4-223ENST00000555904 RAD54L2Q9Y4B4 1467 aa21.02■□□□□ 0.96
ABCD4-223ENST00000555904 TARBP1Q13395 1621 aaKnown RBP21■□□□□ 0.95
ABCD4-223ENST00000555904 ABCA10Q8WWZ4 1543 aa20.97■□□□□ 0.95
ABCD4-223ENST00000555904 WDR97A6NE52 1622 aa20.93■□□□□ 0.94
ABCD4-223ENST00000555904 ZNF608Q9ULD9 1512 aaPredicted RBP20.89■□□□□ 0.94
ABCD4-223ENST00000555904 TDRD9Q8NDG6 1382 aaKnown RBP20.89■□□□□ 0.93
ABCD4-223ENST00000555904 KIF27Q86VH2 1401 aa20.88■□□□□ 0.93
ABCD4-223ENST00000555904 EIF4G3O43432 1585 aaKnown RBP20.87■□□□□ 0.93
ABCD4-223ENST00000555904 AQRO60306 1485 aaKnown RBP eCLIP20.84■□□□□ 0.934e-9■■■■■ 29.5
ABCD4-223ENST00000555904 GAPVD1Q14C86 1478 aa20.84■□□□□ 0.93
ABCD4-223ENST00000555904 ABCA5Q8WWZ7 1642 aa20.84■□□□□ 0.93
ABCD4-223ENST00000555904 GRIN2BQ13224 1484 aa20.79■□□□□ 0.92
ABCD4-223ENST00000555904 EEA1Q15075 1411 aa20.78■□□□□ 0.92
ABCD4-223ENST00000555904 PBRM1Q86U86 1689 aa20.75■□□□□ 0.91
ABCD4-223ENST00000555904 ERICH3Q5RHP9 1530 aa20.74■□□□□ 0.91
ABCD4-223ENST00000555904 RUSC2Q8N2Y8 1516 aa20.72■□□□□ 0.91
ABCD4-223ENST00000555904 MAGI1Q96QZ7 1491 aaPredicted RBP20.7■□□□□ 0.9
ABCD4-223ENST00000555904 SNAPC4Q5SXM2 1469 aa20.69■□□□□ 0.9
ABCD4-223ENST00000555904 FAM9AQ8IZU1 332 aaPredicted RBP20.68■□□□□ 0.9
ABCD4-223ENST00000555904 IGF1RP08069 1367 aa20.67■□□□□ 0.9
ABCD4-223ENST00000555904 CUL7Q14999 1698 aa20.65■□□□□ 0.9
ABCD4-223ENST00000555904 CSRNP3Q8WYN3 585 aa20.64■□□□□ 0.89
ABCD4-223ENST00000555904 ADAMTS12P58397 1594 aa20.63■□□□□ 0.89
ABCD4-223ENST00000555904 FHAD1B1AJZ9 1412 aa20.62■□□□□ 0.89
ABCD4-223ENST00000555904 SYNJ2O15056 1496 aa20.61■□□□□ 0.89
ABCD4-223ENST00000555904 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
ABCD4-223ENST00000555904 FBLN2P98095 1184 aa20.59■□□□□ 0.89
ABCD4-223ENST00000555904 CHMP7Q8WUX9 453 aaPredicted RBP20.59■□□□□ 0.89
ABCD4-223ENST00000555904 RAPGEF2Q9Y4G8 1499 aa20.54■□□□□ 0.88
ABCD4-223ENST00000555904 PRXQ9BXM0 1461 aa20.53■□□□□ 0.88
ABCD4-223ENST00000555904 GRIN2AQ12879 1464 aa20.52■□□□□ 0.88
ABCD4-223ENST00000555904 CHD1O14646 1710 aa20.49■□□□□ 0.87
ABCD4-223ENST00000555904 KIF21BO75037 1637 aa20.49■□□□□ 0.87
ABCD4-223ENST00000555904 GOLGA3Q08378 1498 aa20.43■□□□□ 0.86
ABCD4-223ENST00000555904 OSCARQ8IYS5 282 aa20.4■□□□□ 0.86
ABCD4-223ENST00000555904 EHMT2Q96KQ7 1210 aa20.39■□□□□ 0.85
ABCD4-223ENST00000555904 NUP160Q12769 1436 aa20.38■□□□□ 0.85
ABCD4-223ENST00000555904 CEP170Q5SW79 1584 aa20.37■□□□□ 0.85
ABCD4-223ENST00000555904 UBTFP17480 764 aaKnown RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms