RNA–Protein interactions for RNA: ENST00000555537.1

NEK9-206, Transcript of NIMA related kinase 9, humanhuman

TSL 2

Gene NEK9, Length 675 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-206ENST00000555537 NISCHQ9Y2I1 1504 aa21.38■■□□□ 1.01
NEK9-206ENST00000555537 ABCC9O60706 1549 aa19.72■□□□□ 0.75
NEK9-206ENST00000555537 CCDC180Q9P1Z9 1646 aa19.22■□□□□ 0.67
NEK9-206ENST00000555537 DNAJC5BQ9UF47 199 aa18.89■□□□□ 0.61
NEK9-206ENST00000555537 RB1CC1Q8TDY2 1594 aa18.51■□□□□ 0.55
NEK9-206ENST00000555537 PABPN1Q86U42 306 aaKnown RBP eCLIP18.4■□□□□ 0.54
NEK9-206ENST00000555537 DCAF8L2P0C7V8 631 aa18.39■□□□□ 0.53
NEK9-206ENST00000555537 NACADO15069 1562 aa18.3■□□□□ 0.52
NEK9-206ENST00000555537 UNC13AQ9UPW8 1703 aa18.12■□□□□ 0.49
NEK9-206ENST00000555537 BICRAQ9NZM4 1560 aa18.04■□□□□ 0.48
NEK9-206ENST00000555537 MYO15BQ96JP2 1530 aa17.88■□□□□ 0.45
NEK9-206ENST00000555537 CECR2Q9BXF3 1484 aa17.75■□□□□ 0.43
NEK9-206ENST00000555537 CC2D2AQ9P2K1 1620 aa17.75■□□□□ 0.43
NEK9-206ENST00000555537 ZCCHC6Q5VYS8 1495 aaKnown RBP17.62■□□□□ 0.41
NEK9-206ENST00000555537 SCRIBQ14160 1630 aa17.61■□□□□ 0.41
NEK9-206ENST00000555537 EIF4G1Q04637 1599 aaKnown RBP17.61■□□□□ 0.41
NEK9-206ENST00000555537 SHROOM4Q9ULL8 1493 aa17.6■□□□□ 0.41
NEK9-206ENST00000555537 DCAF1Q9Y4B6 1507 aa17.55■□□□□ 0.4
NEK9-206ENST00000555537 DNAJC5Q9H3Z4 198 aa17.51■□□□□ 0.39
NEK9-206ENST00000555537 CUX2O14529 1486 aa17.02■□□□□ 0.32
NEK9-206ENST00000555537 ERCC6Q03468 1493 aa17.01■□□□□ 0.31
NEK9-206ENST00000555537 NCAPD3P42695 1498 aa16.93■□□□□ 0.3
NEK9-206ENST00000555537 ATAD2BQ9ULI0 1458 aa16.86■□□□□ 0.29
NEK9-206ENST00000555537 NESP48681 1621 aa16.86■□□□□ 0.29
NEK9-206ENST00000555537 SMARCA2P51531 1590 aa16.73■□□□□ 0.27
NEK9-206ENST00000555537 SMARCA4P51532 1647 aa16.73■□□□□ 0.27
NEK9-206ENST00000555537 HMGXB3Q12766 1538 aa16.72■□□□□ 0.27
NEK9-206ENST00000555537 TRIM41Q8WV44 630 aa16.68■□□□□ 0.26
NEK9-206ENST00000555537 BAZ1BQ9UIG0 1483 aaKnown RBP16.67■□□□□ 0.26
NEK9-206ENST00000555537 THOC2Q8NI27 1593 aaKnown RBP16.65■□□□□ 0.26
NEK9-206ENST00000555537 BAZ1AQ9NRL2 1556 aaPredicted RBP16.57■□□□□ 0.24
NEK9-206ENST00000555537 LAMC3Q9Y6N6 1575 aa16.57■□□□□ 0.24
NEK9-206ENST00000555537 KIF21AQ7Z4S6 1674 aa16.56■□□□□ 0.24
NEK9-206ENST00000555537 PDS5BQ9NTI5 1447 aa16.53■□□□□ 0.24
NEK9-206ENST00000555537 MROH2BQ7Z745 1585 aa16.51■□□□□ 0.23
NEK9-206ENST00000555537 PEG3Q9GZU2 1588 aa16.51■□□□□ 0.23
NEK9-206ENST00000555537 CADPSQ9ULU8 1353 aa16.44■□□□□ 0.22
NEK9-206ENST00000555537 MRC2Q9UBG0 1479 aa16.4■□□□□ 0.22
NEK9-206ENST00000555537 WDR62O43379 1518 aa16.35■□□□□ 0.21
NEK9-206ENST00000555537 OSCARQ8IYS5 282 aa16.3■□□□□ 0.2
NEK9-206ENST00000555537 WIZO95785 1651 aa16.3■□□□□ 0.2
NEK9-206ENST00000555537 CEP164Q9UPV0 1460 aa16.27■□□□□ 0.19
NEK9-206ENST00000555537 FANCD2Q9BXW9 1451 aa16.24■□□□□ 0.19
NEK9-206ENST00000555537 CFTRP13569 1480 aa16.16■□□□□ 0.18
NEK9-206ENST00000555537 URB2Q14146 1524 aaKnown RBP16.14■□□□□ 0.18
NEK9-206ENST00000555537 RIMBP3CA6NJZ7 1639 aa16.07■□□□□ 0.16
NEK9-206ENST00000555537 RIMBP3BA6NNM3 1639 aa16.07■□□□□ 0.16
NEK9-206ENST00000555537 RIMBP3Q9UFD9 1639 aa16.07■□□□□ 0.16
NEK9-206ENST00000555537 RSF1Q96T23 1441 aaPredicted RBP16.05■□□□□ 0.16
NEK9-206ENST00000555537 ZNF608Q9ULD9 1512 aaPredicted RBP16.03■□□□□ 0.16
NEK9-206ENST00000555537 CYB5RLQ6IPT4 315 aa16.01■□□□□ 0.15
NEK9-206ENST00000555537 TOP2AP11388 1531 aaKnown RBP15.99■□□□□ 0.15
NEK9-206ENST00000555537 ARHGEF11O15085 1522 aa15.98■□□□□ 0.15
NEK9-206ENST00000555537 IFT140Q96RY7 1462 aa15.95■□□□□ 0.14
NEK9-206ENST00000555537 TRHP20396 242 aaPredicted RBP15.94■□□□□ 0.14
NEK9-206ENST00000555537 CCDC88BA6NC98 1476 aa15.9■□□□□ 0.14
NEK9-206ENST00000555537 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
NEK9-206ENST00000555537 FBLN2P98095 1184 aa15.88■□□□□ 0.13
NEK9-206ENST00000555537 PRDM2Q13029 1718 aa15.87■□□□□ 0.13
NEK9-206ENST00000555537 AQRO60306 1485 aaKnown RBP eCLIP15.86■□□□□ 0.13
NEK9-206ENST00000555537 EIF4G3O43432 1585 aaKnown RBP15.84■□□□□ 0.13
NEK9-206ENST00000555537 ARAP1Q96P48 1450 aa15.82■□□□□ 0.12
NEK9-206ENST00000555537 CHD1O14646 1710 aa15.8■□□□□ 0.12
NEK9-206ENST00000555537 ABCC8Q09428 1581 aa15.78■□□□□ 0.12
NEK9-206ENST00000555537 DNMBPQ6XZF7 1577 aa15.77■□□□□ 0.11
NEK9-206ENST00000555537 TARBP1Q13395 1621 aaKnown RBP15.76■□□□□ 0.11
NEK9-206ENST00000555537 TDRD9Q8NDG6 1382 aaKnown RBP15.73■□□□□ 0.11
NEK9-206ENST00000555537 RAD54L2Q9Y4B4 1467 aa15.72■□□□□ 0.11
NEK9-206ENST00000555537 POLA1P09884 1462 aaPredicted RBP15.71■□□□□ 0.11
NEK9-206ENST00000555537 AEBP2Q6ZN18 517 aaPredicted RBP15.69■□□□□ 0.1
NEK9-206ENST00000555537 SOGA1O94964 1423 aa15.68■□□□□ 0.1
NEK9-206ENST00000555537 CHMP7Q8WUX9 453 aaPredicted RBP15.66■□□□□ 0.1
NEK9-206ENST00000555537 SNAPC4Q5SXM2 1469 aa15.64■□□□□ 0.09
NEK9-206ENST00000555537 CLASP1Q7Z460 1538 aa15.6■□□□□ 0.09
NEK9-206ENST00000555537 FGD5Q6ZNL6 1462 aa15.58■□□□□ 0.08
NEK9-206ENST00000555537 SYNJ1O43426 1573 aa15.54■□□□□ 0.08
NEK9-206ENST00000555537 GRIN2BQ13224 1484 aa15.52■□□□□ 0.08
NEK9-206ENST00000555537 MAGI1Q96QZ7 1491 aaPredicted RBP15.52■□□□□ 0.08
NEK9-206ENST00000555537 CUX1P39880 1505 aa15.52■□□□□ 0.07
NEK9-206ENST00000555537 SYNJ2O15056 1496 aa15.51■□□□□ 0.07
NEK9-206ENST00000555537 GAPVD1Q14C86 1478 aa15.5■□□□□ 0.07
NEK9-206ENST00000555537 WDR97A6NE52 1622 aa15.46■□□□□ 0.07
NEK9-206ENST00000555537 ERCC6L2Q5T890 1561 aa15.42■□□□□ 0.06
NEK9-206ENST00000555537 PBRM1Q86U86 1689 aa15.41■□□□□ 0.06
NEK9-206ENST00000555537 ABCA10Q8WWZ4 1543 aa15.34■□□□□ 0.05
NEK9-206ENST00000555537 ABCA5Q8WWZ7 1642 aa15.33■□□□□ 0.04
NEK9-206ENST00000555537 GRIN2AQ12879 1464 aa15.32■□□□□ 0.04
NEK9-206ENST00000555537 CEP170Q5SW79 1584 aa15.31■□□□□ 0.04
NEK9-206ENST00000555537 NUP160Q12769 1436 aa15.28■□□□□ 0.04
NEK9-206ENST00000555537 ADAMTS12P58397 1594 aa15.24■□□□□ 0.03
NEK9-206ENST00000555537 WRNQ14191 1432 aaPredicted RBP eCLIP15.24■□□□□ 0.03
NEK9-206ENST00000555537 KIF13AQ9H1H9 1805 aa15.22■□□□□ 0.03
NEK9-206ENST00000555537 SUPT5HO00267 1087 aaKnown RBP15.22■□□□□ 0.03
NEK9-206ENST00000555537 FAM69CQ0P6D2 419 aa15.22■□□□□ 0.03
NEK9-206ENST00000555537 JPH4Q96JJ6 628 aa15.22■□□□□ 0.03
NEK9-206ENST00000555537 FHAD1B1AJZ9 1412 aa15.22■□□□□ 0.03
NEK9-206ENST00000555537 SHROOM2Q13796 1616 aa15.21■□□□□ 0.03
NEK9-206ENST00000555537 PRG4Q92954 1404 aaPredicted RBP15.21■□□□□ 0.03
NEK9-206ENST00000555537 NPM1P06748 294 aaKnown RBP eCLIP15.16■□□□□ 0.02
NEK9-206ENST00000555537 KDM4FA0A1W2PPD8 638 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms