RNA–Protein interactions for RNA: ENST00000555416.5

SNX6-203, Transcript of sorting nexin 6, humanhuman

TSL 1 (best)

Gene SNX6, Length 1,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-203ENST00000555416 NISCHQ9Y2I1 1504 aa33.56■■■□□ 2.96
SNX6-203ENST00000555416 CCDC180Q9P1Z9 1646 aa29.82■■■□□ 2.36
SNX6-203ENST00000555416 ABCC9O60706 1549 aa29.4■■■□□ 2.3
SNX6-203ENST00000555416 RB1CC1Q8TDY2 1594 aa28.13■■■□□ 2.09
SNX6-203ENST00000555416 DCAF8L2P0C7V8 631 aa28.11■■■□□ 2.09
SNX6-203ENST00000555416 NACADO15069 1562 aa28.07■■■□□ 2.08
SNX6-203ENST00000555416 ZCCHC6Q5VYS8 1495 aaKnown RBP27.94■■■□□ 2.06
SNX6-203ENST00000555416 MYO15BQ96JP2 1530 aa27.84■■■□□ 2.05
SNX6-203ENST00000555416 DCAF1Q9Y4B6 1507 aa27.7■■■□□ 2.02
SNX6-203ENST00000555416 UNC13AQ9UPW8 1703 aa27.57■■■□□ 2
SNX6-203ENST00000555416 PABPN1Q86U42 306 aaKnown RBP eCLIP27.49■■□□□ 1.99
SNX6-203ENST00000555416 BICRAQ9NZM4 1560 aa27.39■■□□□ 1.98
SNX6-203ENST00000555416 SCRIBQ14160 1630 aa27.29■■□□□ 1.96
SNX6-203ENST00000555416 DNAJC5BQ9UF47 199 aa27.2■■□□□ 1.94
SNX6-203ENST00000555416 SHROOM4Q9ULL8 1493 aa26.93■■□□□ 1.9
SNX6-203ENST00000555416 EIF4G1Q04637 1599 aaKnown RBP26.63■■□□□ 1.85
SNX6-203ENST00000555416 CC2D2AQ9P2K1 1620 aa26.57■■□□□ 1.84
SNX6-203ENST00000555416 CECR2Q9BXF3 1484 aa26.39■■□□□ 1.82
SNX6-203ENST00000555416 SMARCA4P51532 1647 aa26.06■■□□□ 1.76
SNX6-203ENST00000555416 BAZ1AQ9NRL2 1556 aaPredicted RBP25.97■■□□□ 1.75
SNX6-203ENST00000555416 ATAD2BQ9ULI0 1458 aa25.97■■□□□ 1.75
SNX6-203ENST00000555416 NCAPD3P42695 1498 aa25.94■■□□□ 1.74
SNX6-203ENST00000555416 MROH2BQ7Z745 1585 aa25.92■■□□□ 1.74
SNX6-203ENST00000555416 SMARCA2P51531 1590 aa25.86■■□□□ 1.73
SNX6-203ENST00000555416 PEG3Q9GZU2 1588 aa25.78■■□□□ 1.72
SNX6-203ENST00000555416 HMGXB3Q12766 1538 aa25.78■■□□□ 1.72
SNX6-203ENST00000555416 BAZ1BQ9UIG0 1483 aaKnown RBP25.71■■□□□ 1.71
SNX6-203ENST00000555416 WIZO95785 1651 aa25.61■■□□□ 1.69
SNX6-203ENST00000555416 RSF1Q96T23 1441 aaPredicted RBP25.56■■□□□ 1.68
SNX6-203ENST00000555416 NESP48681 1621 aa25.45■■□□□ 1.66
SNX6-203ENST00000555416 TOP2AP11388 1531 aaKnown RBP25.29■■□□□ 1.64
SNX6-203ENST00000555416 ERCC6Q03468 1493 aa25.28■■□□□ 1.64
SNX6-203ENST00000555416 LAMC3Q9Y6N6 1575 aa25.23■■□□□ 1.63
SNX6-203ENST00000555416 CADPSQ9ULU8 1353 aa25.18■■□□□ 1.62
SNX6-203ENST00000555416 KIF21AQ7Z4S6 1674 aa25.08■■□□□ 1.61
SNX6-203ENST00000555416 PDS5BQ9NTI5 1447 aa25.06■■□□□ 1.6
SNX6-203ENST00000555416 CUX2O14529 1486 aa25.04■■□□□ 1.6
SNX6-203ENST00000555416 CCDC88BA6NC98 1476 aa25.03■■□□□ 1.6
SNX6-203ENST00000555416 THOC2Q8NI27 1593 aaKnown RBP25.03■■□□□ 1.6
SNX6-203ENST00000555416 CFTRP13569 1480 aa25.02■■□□□ 1.6
SNX6-203ENST00000555416 AEBP2Q6ZN18 517 aaPredicted RBP24.99■■□□□ 1.59
SNX6-203ENST00000555416 FANCD2Q9BXW9 1451 aa24.9■■□□□ 1.58
SNX6-203ENST00000555416 MRC2Q9UBG0 1479 aa24.86■■□□□ 1.57
SNX6-203ENST00000555416 CEP164Q9UPV0 1460 aa24.86■■□□□ 1.57
SNX6-203ENST00000555416 SUPT5HO00267 1087 aaKnown RBP24.83■■□□□ 1.57
SNX6-203ENST00000555416 WDR62O43379 1518 aa24.79■■□□□ 1.56
SNX6-203ENST00000555416 PRDM2Q13029 1718 aa24.75■■□□□ 1.55
SNX6-203ENST00000555416 URB2Q14146 1524 aaKnown RBP24.71■■□□□ 1.55
SNX6-203ENST00000555416 TOPBP1Q92547 1522 aa24.51■■□□□ 1.51
SNX6-203ENST00000555416 DNAJC5Q9H3Z4 198 aa24.47■■□□□ 1.51
SNX6-203ENST00000555416 DNMBPQ6XZF7 1577 aa24.43■■□□□ 1.5
SNX6-203ENST00000555416 ABCC8Q09428 1581 aa24.39■■□□□ 1.5
SNX6-203ENST00000555416 IFT140Q96RY7 1462 aa24.33■■□□□ 1.49
SNX6-203ENST00000555416 ZNF608Q9ULD9 1512 aaPredicted RBP24.33■■□□□ 1.49
SNX6-203ENST00000555416 CUX1P39880 1505 aa24.3■■□□□ 1.48
SNX6-203ENST00000555416 POLA1P09884 1462 aaPredicted RBP24.3■■□□□ 1.48
SNX6-203ENST00000555416 TARBP1Q13395 1621 aaKnown RBP24.25■■□□□ 1.47
SNX6-203ENST00000555416 RAD54L2Q9Y4B4 1467 aa24.23■■□□□ 1.47
SNX6-203ENST00000555416 FGD5Q6ZNL6 1462 aa24.22■■□□□ 1.47
SNX6-203ENST00000555416 SOGA1O94964 1423 aa24.18■■□□□ 1.46
SNX6-203ENST00000555416 EIF4G3O43432 1585 aaKnown RBP24.17■■□□□ 1.46
SNX6-203ENST00000555416 AQRO60306 1485 aaKnown RBP eCLIP24.17■■□□□ 1.461e-6■■■■■ 27.8
SNX6-203ENST00000555416 TDRD9Q8NDG6 1382 aaKnown RBP24.1■■□□□ 1.45
SNX6-203ENST00000555416 CHIC1Q5VXU3 224 aa24.06■■□□□ 1.44
SNX6-203ENST00000555416 WRNQ14191 1432 aaPredicted RBP eCLIP24.06■■□□□ 1.44
SNX6-203ENST00000555416 SYNJ1O43426 1573 aa24.06■■□□□ 1.44
SNX6-203ENST00000555416 WDR97A6NE52 1622 aa24.01■■□□□ 1.43
SNX6-203ENST00000555416 TOP2BQ02880 1626 aa24.01■■□□□ 1.43
SNX6-203ENST00000555416 BIVM-ERCC5R4GMW8 1640 aa24.01■■□□□ 1.43
SNX6-203ENST00000555416 OSCARQ8IYS5 282 aa24■■□□□ 1.43
SNX6-203ENST00000555416 ABCA10Q8WWZ4 1543 aa23.95■■□□□ 1.43
SNX6-203ENST00000555416 SNAPC4Q5SXM2 1469 aa23.91■■□□□ 1.42
SNX6-203ENST00000555416 CHD1O14646 1710 aa23.9■■□□□ 1.42
SNX6-203ENST00000555416 ABCA5Q8WWZ7 1642 aa23.88■■□□□ 1.41
SNX6-203ENST00000555416 GRIN2BQ13224 1484 aa23.88■■□□□ 1.41
SNX6-203ENST00000555416 GAPVD1Q14C86 1478 aa23.88■■□□□ 1.41
SNX6-203ENST00000555416 FBLN2P98095 1184 aa23.86■■□□□ 1.41
SNX6-203ENST00000555416 PBRM1Q86U86 1689 aa23.83■■□□□ 1.41
SNX6-203ENST00000555416 MAGI1Q96QZ7 1491 aaPredicted RBP23.81■■□□□ 1.4
SNX6-203ENST00000555416 SYNJ2O15056 1496 aa23.75■■□□□ 1.39
SNX6-203ENST00000555416 CHMP7Q8WUX9 453 aaPredicted RBP23.74■■□□□ 1.39
SNX6-203ENST00000555416 RIMBP3CA6NJZ7 1639 aa23.67■■□□□ 1.38
SNX6-203ENST00000555416 RIMBP3BA6NNM3 1639 aa23.67■■□□□ 1.38
SNX6-203ENST00000555416 RIMBP3Q9UFD9 1639 aa23.67■■□□□ 1.38
SNX6-203ENST00000555416 ADAMTS12P58397 1594 aa23.65■■□□□ 1.38
SNX6-203ENST00000555416 ARHGEF11O15085 1522 aa23.65■■□□□ 1.38
SNX6-203ENST00000555416 TRIM41Q8WV44 630 aa23.64■■□□□ 1.37
SNX6-203ENST00000555416 ERICH3Q5RHP9 1530 aa23.64■■□□□ 1.37
SNX6-203ENST00000555416 CLASP1Q7Z460 1538 aa23.64■■□□□ 1.37
SNX6-203ENST00000555416 GRIN2AQ12879 1464 aa23.6■■□□□ 1.37
SNX6-203ENST00000555416 FHAD1B1AJZ9 1412 aa23.59■■□□□ 1.37
SNX6-203ENST00000555416 KIF27Q86VH2 1401 aa23.53■■□□□ 1.36
SNX6-203ENST00000555416 IGF1RP08069 1367 aa23.52■■□□□ 1.36
SNX6-203ENST00000555416 CEP170Q5SW79 1584 aa23.52■■□□□ 1.36
SNX6-203ENST00000555416 NUP160Q12769 1436 aa23.5■■□□□ 1.35
SNX6-203ENST00000555416 ARAP1Q96P48 1450 aa23.49■■□□□ 1.35
SNX6-203ENST00000555416 CYB5RLQ6IPT4 315 aa23.45■■□□□ 1.34
SNX6-203ENST00000555416 RUSC2Q8N2Y8 1516 aa23.43■■□□□ 1.34
SNX6-203ENST00000555416 ERCC6L2Q5T890 1561 aa23.38■■□□□ 1.33
SNX6-203ENST00000555416 CUL7Q14999 1698 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms