RNA–Protein interactions for RNA: ENST00000555303.1

AC004828.1-201, humanhuman

TSL 3 BASIC

Gene AC004828.1, Length 654 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004828.1-201ENST00000555303 NISCHQ9Y2I1 1504 aa22.54■■□□□ 1.2
AC004828.1-201ENST00000555303 CCDC180Q9P1Z9 1646 aa20.31■□□□□ 0.84
AC004828.1-201ENST00000555303 ABCC9O60706 1549 aa19.99■□□□□ 0.79
AC004828.1-201ENST00000555303 RB1CC1Q8TDY2 1594 aa19.21■□□□□ 0.67
AC004828.1-201ENST00000555303 NACADO15069 1562 aa19.1■□□□□ 0.65
AC004828.1-201ENST00000555303 MYO15BQ96JP2 1530 aa18.93■□□□□ 0.62
AC004828.1-201ENST00000555303 UNC13AQ9UPW8 1703 aa18.78■□□□□ 0.6
AC004828.1-201ENST00000555303 DCAF8L2P0C7V8 631 aa18.78■□□□□ 0.6
AC004828.1-201ENST00000555303 ZCCHC6Q5VYS8 1495 aaKnown RBP18.73■□□□□ 0.59
AC004828.1-201ENST00000555303 DCAF1Q9Y4B6 1507 aa18.71■□□□□ 0.59
AC004828.1-201ENST00000555303 BICRAQ9NZM4 1560 aa18.59■□□□□ 0.57
AC004828.1-201ENST00000555303 DNAJC5BQ9UF47 199 aa18.55■□□□□ 0.56
AC004828.1-201ENST00000555303 PABPN1Q86U42 306 aaKnown RBP eCLIP18.54■□□□□ 0.56
AC004828.1-201ENST00000555303 SHROOM4Q9ULL8 1493 aa18.5■□□□□ 0.55
AC004828.1-201ENST00000555303 SCRIBQ14160 1630 aa18.38■□□□□ 0.53
AC004828.1-201ENST00000555303 EIF4G1Q04637 1599 aaKnown RBP18.14■□□□□ 0.49
AC004828.1-201ENST00000555303 CC2D2AQ9P2K1 1620 aa18.14■□□□□ 0.49
AC004828.1-201ENST00000555303 CECR2Q9BXF3 1484 aa18.04■□□□□ 0.48
AC004828.1-201ENST00000555303 SMARCA4P51532 1647 aa17.59■□□□□ 0.41
AC004828.1-201ENST00000555303 NCAPD3P42695 1498 aa17.59■□□□□ 0.41
AC004828.1-201ENST00000555303 SMARCA2P51531 1590 aa17.56■□□□□ 0.4
AC004828.1-201ENST00000555303 HMGXB3Q12766 1538 aa17.54■□□□□ 0.4
AC004828.1-201ENST00000555303 BAZ1AQ9NRL2 1556 aaPredicted RBP17.53■□□□□ 0.4
AC004828.1-201ENST00000555303 ATAD2BQ9ULI0 1458 aa17.52■□□□□ 0.4
AC004828.1-201ENST00000555303 PEG3Q9GZU2 1588 aa17.46■□□□□ 0.39
AC004828.1-201ENST00000555303 BAZ1BQ9UIG0 1483 aaKnown RBP17.38■□□□□ 0.37
AC004828.1-201ENST00000555303 MROH2BQ7Z745 1585 aa17.32■□□□□ 0.36
AC004828.1-201ENST00000555303 CUX2O14529 1486 aa17.31■□□□□ 0.36
AC004828.1-201ENST00000555303 ERCC6Q03468 1493 aa17.31■□□□□ 0.36
AC004828.1-201ENST00000555303 LAMC3Q9Y6N6 1575 aa17.23■□□□□ 0.35
AC004828.1-201ENST00000555303 NESP48681 1621 aa17.2■□□□□ 0.34
AC004828.1-201ENST00000555303 WIZO95785 1651 aa17.14■□□□□ 0.33
AC004828.1-201ENST00000555303 THOC2Q8NI27 1593 aaKnown RBP17.12■□□□□ 0.33
AC004828.1-201ENST00000555303 KIF21AQ7Z4S6 1674 aa17.09■□□□□ 0.33
AC004828.1-201ENST00000555303 PDS5BQ9NTI5 1447 aa17.07■□□□□ 0.32
AC004828.1-201ENST00000555303 DNAJC5Q9H3Z4 198 aa17.04■□□□□ 0.32
AC004828.1-201ENST00000555303 CADPSQ9ULU8 1353 aa17.02■□□□□ 0.32
AC004828.1-201ENST00000555303 RSF1Q96T23 1441 aaPredicted RBP17■□□□□ 0.31
AC004828.1-201ENST00000555303 TOP2AP11388 1531 aaKnown RBP16.99■□□□□ 0.31
AC004828.1-201ENST00000555303 MRC2Q9UBG0 1479 aa16.93■□□□□ 0.3
AC004828.1-201ENST00000555303 WDR62O43379 1518 aa16.91■□□□□ 0.3
AC004828.1-201ENST00000555303 CFTRP13569 1480 aa16.89■□□□□ 0.29
AC004828.1-201ENST00000555303 CEP164Q9UPV0 1460 aa16.88■□□□□ 0.29
AC004828.1-201ENST00000555303 PRDM2Q13029 1718 aa16.86■□□□□ 0.29
AC004828.1-201ENST00000555303 FANCD2Q9BXW9 1451 aa16.85■□□□□ 0.29
AC004828.1-201ENST00000555303 CCDC88BA6NC98 1476 aa16.71■□□□□ 0.27
AC004828.1-201ENST00000555303 URB2Q14146 1524 aaKnown RBP16.7■□□□□ 0.26
AC004828.1-201ENST00000555303 ABCC8Q09428 1581 aa16.59■□□□□ 0.25
AC004828.1-201ENST00000555303 DNMBPQ6XZF7 1577 aa16.55■□□□□ 0.24
AC004828.1-201ENST00000555303 TOPBP1Q92547 1522 aa16.55■□□□□ 0.24
AC004828.1-201ENST00000555303 IFT140Q96RY7 1462 aa16.54■□□□□ 0.24
AC004828.1-201ENST00000555303 EIF4G3O43432 1585 aaKnown RBP16.45■□□□□ 0.22
AC004828.1-201ENST00000555303 ZNF608Q9ULD9 1512 aaPredicted RBP16.44■□□□□ 0.22
AC004828.1-201ENST00000555303 TARBP1Q13395 1621 aaKnown RBP16.43■□□□□ 0.22
AC004828.1-201ENST00000555303 OSCARQ8IYS5 282 aa16.42■□□□□ 0.22
AC004828.1-201ENST00000555303 POLA1P09884 1462 aaPredicted RBP16.38■□□□□ 0.21
AC004828.1-201ENST00000555303 WDR97A6NE52 1622 aa16.37■□□□□ 0.21
AC004828.1-201ENST00000555303 CHD1O14646 1710 aa16.3■□□□□ 0.2
AC004828.1-201ENST00000555303 CUX1P39880 1505 aa16.29■□□□□ 0.2
AC004828.1-201ENST00000555303 FGD5Q6ZNL6 1462 aa16.29■□□□□ 0.2
AC004828.1-201ENST00000555303 AQRO60306 1485 aaKnown RBP eCLIP16.28■□□□□ 0.2
AC004828.1-201ENST00000555303 TRIM41Q8WV44 630 aa16.27■□□□□ 0.2
AC004828.1-201ENST00000555303 SOGA1O94964 1423 aa16.27■□□□□ 0.19
AC004828.1-201ENST00000555303 RIMBP3CA6NJZ7 1639 aa16.27■□□□□ 0.19
AC004828.1-201ENST00000555303 RIMBP3BA6NNM3 1639 aa16.27■□□□□ 0.19
AC004828.1-201ENST00000555303 RIMBP3Q9UFD9 1639 aa16.27■□□□□ 0.19
AC004828.1-201ENST00000555303 RAD54L2Q9Y4B4 1467 aa16.25■□□□□ 0.19
AC004828.1-201ENST00000555303 ARHGEF11O15085 1522 aa16.22■□□□□ 0.19
AC004828.1-201ENST00000555303 SUPT5HO00267 1087 aaKnown RBP16.2■□□□□ 0.18
AC004828.1-201ENST00000555303 MAGI1Q96QZ7 1491 aaPredicted RBP16.2■□□□□ 0.18
AC004828.1-201ENST00000555303 TDRD9Q8NDG6 1382 aaKnown RBP16.18■□□□□ 0.18
AC004828.1-201ENST00000555303 PBRM1Q86U86 1689 aa16.18■□□□□ 0.18
AC004828.1-201ENST00000555303 GRIN2BQ13224 1484 aa16.17■□□□□ 0.18
AC004828.1-201ENST00000555303 SNAPC4Q5SXM2 1469 aa16.17■□□□□ 0.18
AC004828.1-201ENST00000555303 ABCA10Q8WWZ4 1543 aa16.14■□□□□ 0.18
AC004828.1-201ENST00000555303 ABCA5Q8WWZ7 1642 aa16.14■□□□□ 0.17
AC004828.1-201ENST00000555303 BIVM-ERCC5R4GMW8 1640 aa16.14■□□□□ 0.17
AC004828.1-201ENST00000555303 SYNJ1O43426 1573 aa16.13■□□□□ 0.17
AC004828.1-201ENST00000555303 SYNJ2O15056 1496 aa16.12■□□□□ 0.17
AC004828.1-201ENST00000555303 TOP2BQ02880 1626 aa16.12■□□□□ 0.17
AC004828.1-201ENST00000555303 GAPVD1Q14C86 1478 aa16.11■□□□□ 0.17
AC004828.1-201ENST00000555303 CLASP1Q7Z460 1538 aa16.11■□□□□ 0.17
AC004828.1-201ENST00000555303 FBLN2P98095 1184 aa16.11■□□□□ 0.17
AC004828.1-201ENST00000555303 WRNQ14191 1432 aaPredicted RBP eCLIP16.08■□□□□ 0.16
AC004828.1-201ENST00000555303 CHMP7Q8WUX9 453 aaPredicted RBP16.06■□□□□ 0.16
AC004828.1-201ENST00000555303 ARAP1Q96P48 1450 aa16.04■□□□□ 0.16
AC004828.1-201ENST00000555303 ADAMTS12P58397 1594 aa16■□□□□ 0.15
AC004828.1-201ENST00000555303 ERICH3Q5RHP9 1530 aa15.98■□□□□ 0.15
AC004828.1-201ENST00000555303 CYB5RLQ6IPT4 315 aa15.97■□□□□ 0.15
AC004828.1-201ENST00000555303 GRIN2AQ12879 1464 aa15.97■□□□□ 0.15
AC004828.1-201ENST00000555303 FHAD1B1AJZ9 1412 aa15.93■□□□□ 0.14
AC004828.1-201ENST00000555303 NUP160Q12769 1436 aa15.91■□□□□ 0.14
AC004828.1-201ENST00000555303 CEP170Q5SW79 1584 aa15.89■□□□□ 0.13
AC004828.1-201ENST00000555303 SHROOM2Q13796 1616 aa15.88■□□□□ 0.13
AC004828.1-201ENST00000555303 CUL7Q14999 1698 aa15.8■□□□□ 0.12
AC004828.1-201ENST00000555303 RUSC2Q8N2Y8 1516 aa15.78■□□□□ 0.12
AC004828.1-201ENST00000555303 ERCC6L2Q5T890 1561 aa15.78■□□□□ 0.12
AC004828.1-201ENST00000555303 TRHP20396 242 aaPredicted RBP15.76■□□□□ 0.11
AC004828.1-201ENST00000555303 KIF27Q86VH2 1401 aa15.76■□□□□ 0.11
AC004828.1-201ENST00000555303 PRG4Q92954 1404 aaPredicted RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms