RNA–Protein interactions for RNA: ENST00000553816.5

RDH11-205, Transcript of retinol dehydrogenase 11, humanhuman

TSL 2

Gene RDH11, Length 1,163 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH11-205ENST00000553816 AEBP2Q6ZN18 517 aaPredicted RBP25.34■■□□□ 1.65
RDH11-205ENST00000553816 CHIC1Q5VXU3 224 aa23.55■■□□□ 1.36
RDH11-205ENST00000553816 SENP3Q9H4L4 574 aaPredicted RBP21.54■■□□□ 1.04
RDH11-205ENST00000553816 PHF23Q9BUL5 403 aaPredicted RBP21.26■□□□□ 0.99
RDH11-205ENST00000553816 FOXD1Q16676 465 aa20.22■□□□□ 0.83
RDH11-205ENST00000553816 NISCHQ9Y2I1 1504 aa20.07■□□□□ 0.8
RDH11-205ENST00000553816 POTEDQ86YR6 584 aa19.34■□□□□ 0.69
RDH11-205ENST00000553816 MSH5O43196 834 aa18.97■□□□□ 0.63
RDH11-205ENST00000553816 PIAS4Q8N2W9 510 aaPredicted RBP18.76■□□□□ 0.59
RDH11-205ENST00000553816 PPP6R1Q9UPN7 881 aa18.64■□□□□ 0.57
RDH11-205ENST00000553816 PLPPR3Q6T4P5 718 aa18.57■□□□□ 0.56
RDH11-205ENST00000553816 ADRA2BP18089 450 aa18.53■□□□□ 0.56
RDH11-205ENST00000553816 CCDC180Q9P1Z9 1646 aa17.87■□□□□ 0.45
RDH11-205ENST00000553816 ABCC9O60706 1549 aa17.5■□□□□ 0.39
RDH11-205ENST00000553816 MAPK8IP2Q13387 824 aaPredicted RBP17.17■□□□□ 0.34
RDH11-205ENST00000553816 DMRT2Q9Y5R5 561 aa17.05■□□□□ 0.32
RDH11-205ENST00000553816 RB1CC1Q8TDY2 1594 aa16.79■□□□□ 0.28
RDH11-205ENST00000553816 SCAF1Q9H7N4 1312 aaKnown RBP16.77■□□□□ 0.28
RDH11-205ENST00000553816 NACADO15069 1562 aa16.76■□□□□ 0.27
RDH11-205ENST00000553816 DCAF8L2P0C7V8 631 aa16.75■□□□□ 0.27
RDH11-205ENST00000553816 ZCCHC6Q5VYS8 1495 aaKnown RBP16.73■□□□□ 0.27
RDH11-205ENST00000553816 MYO15BQ96JP2 1530 aa16.62■□□□□ 0.25
RDH11-205ENST00000553816 CACNB1Q02641 598 aaPredicted RBP16.59■□□□□ 0.25
RDH11-205ENST00000553816 UNC13AQ9UPW8 1703 aa16.57■□□□□ 0.24
RDH11-205ENST00000553816 DCAF1Q9Y4B6 1507 aa16.57■□□□□ 0.24
RDH11-205ENST00000553816 DCAF8L1A6NGE4 600 aa16.41■□□□□ 0.22
RDH11-205ENST00000553816 BICRAQ9NZM4 1560 aa16.37■□□□□ 0.21
RDH11-205ENST00000553816 PABPN1Q86U42 306 aaKnown RBP eCLIP16.34■□□□□ 0.21
RDH11-205ENST00000553816 SCRIBQ14160 1630 aa16.33■□□□□ 0.2
RDH11-205ENST00000553816 PPP4R3CPQ6ZMV5 832 aa16.28■□□□□ 0.2
RDH11-205ENST00000553816 HOXD11P31277 338 aaPredicted RBP16.24■□□□□ 0.19
RDH11-205ENST00000553816 RNF39Q9H2S5 420 aa16.21■□□□□ 0.19
RDH11-205ENST00000553816 DNAJC5BQ9UF47 199 aa16.1■□□□□ 0.17
RDH11-205ENST00000553816 SHROOM4Q9ULL8 1493 aa16.03■□□□□ 0.16
RDH11-205ENST00000553816 CNKSR2Q8WXI2 1034 aa16.02■□□□□ 0.16
RDH11-205ENST00000553816 RNF216Q9NWF9 866 aaPredicted RBP15.99■□□□□ 0.15
RDH11-205ENST00000553816 EIF4G1Q04637 1599 aaKnown RBP15.89■□□□□ 0.13
RDH11-205ENST00000553816 C1QBPQ07021 282 aaKnown RBP15.89■□□□□ 0.13
RDH11-205ENST00000553816 CC2D2AQ9P2K1 1620 aa15.85■□□□□ 0.13
RDH11-205ENST00000553816 CECR2Q9BXF3 1484 aa15.69■□□□□ 0.1
RDH11-205ENST00000553816 SMARCA4P51532 1647 aa15.61■□□□□ 0.09
RDH11-205ENST00000553816 BAZ1AQ9NRL2 1556 aaPredicted RBP15.53■□□□□ 0.08
RDH11-205ENST00000553816 MROH2BQ7Z745 1585 aa15.51■□□□□ 0.07
RDH11-205ENST00000553816 ATAD2BQ9ULI0 1458 aa15.49■□□□□ 0.07
RDH11-205ENST00000553816 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.48■□□□□ 0.07
RDH11-205ENST00000553816 NCAPD3P42695 1498 aa15.46■□□□□ 0.06
RDH11-205ENST00000553816 SMARCA2P51531 1590 aa15.45■□□□□ 0.06
RDH11-205ENST00000553816 NCBP3Q53F19 620 aaKnown RBP15.43■□□□□ 0.06
RDH11-205ENST00000553816 PEG3Q9GZU2 1588 aa15.43■□□□□ 0.06
RDH11-205ENST00000553816 HMGXB3Q12766 1538 aa15.4■□□□□ 0.06
RDH11-205ENST00000553816 WIZO95785 1651 aa15.38■□□□□ 0.05
RDH11-205ENST00000553816 BAZ1BQ9UIG0 1483 aaKnown RBP15.34■□□□□ 0.05
RDH11-205ENST00000553816 NPM3O75607 178 aaKnown RBP15.33■□□□□ 0.04
RDH11-205ENST00000553816 RSF1Q96T23 1441 aaPredicted RBP15.28■□□□□ 0.04
RDH11-205ENST00000553816 NESP48681 1621 aa15.17■□□□□ 0.02
RDH11-205ENST00000553816 U3KPZ7 1027 aaPredicted RBP15.15■□□□□ 0.02
RDH11-205ENST00000553816 TOP2AP11388 1531 aaKnown RBP15.14■□□□□ 0.01
RDH11-205ENST00000553816 SPINK5Q9NQ38 1064 aaPredicted RBP15.1■□□□□ 0.01
RDH11-205ENST00000553816 LAMC3Q9Y6N6 1575 aa15.07■□□□□ 0
RDH11-205ENST00000553816 POTEHQ6S545 545 aa15.06■□□□□ 0
RDH11-205ENST00000553816 DSG3P32926 999 aa15.05■□□□□ -0
RDH11-205ENST00000553816 KIF21AQ7Z4S6 1674 aa15.04■□□□□ -0
RDH11-205ENST00000553816 CAPN15O75808 1086 aa15.03■□□□□ -0
RDH11-205ENST00000553816 ERCC6Q03468 1493 aa15.02■□□□□ -0
RDH11-205ENST00000553816 CADPSQ9ULU8 1353 aa14.99□□□□□ -0.01
RDH11-205ENST00000553816 CCDC88BA6NC98 1476 aa14.97□□□□□ -0.01
RDH11-205ENST00000553816 THOC2Q8NI27 1593 aaKnown RBP14.94□□□□□ -0.02
RDH11-205ENST00000553816 CFTRP13569 1480 aa14.93□□□□□ -0.02
RDH11-205ENST00000553816 PRDM2Q13029 1718 aa14.92□□□□□ -0.02
RDH11-205ENST00000553816 PDS5BQ9NTI5 1447 aa14.92□□□□□ -0.02
RDH11-205ENST00000553816 SUPT5HO00267 1087 aaKnown RBP14.88□□□□□ -0.03
RDH11-205ENST00000553816 CUX2O14529 1486 aa14.86□□□□□ -0.03
RDH11-205ENST00000553816 FANCD2Q9BXW9 1451 aa14.85□□□□□ -0.03
RDH11-205ENST00000553816 CEP164Q9UPV0 1460 aa14.82□□□□□ -0.04
RDH11-205ENST00000553816 MRC2Q9UBG0 1479 aa14.81□□□□□ -0.04
RDH11-205ENST00000553816 WDR62O43379 1518 aa14.78□□□□□ -0.04
RDH11-205ENST00000553816 SLC4A2P04920 1241 aa14.77□□□□□ -0.05
RDH11-205ENST00000553816 URB2Q14146 1524 aaKnown RBP14.74□□□□□ -0.05
RDH11-205ENST00000553816 ABCB7O75027 752 aa14.71□□□□□ -0.05
RDH11-205ENST00000553816 TRHP20396 242 aaPredicted RBP14.71□□□□□ -0.05
RDH11-205ENST00000553816 KCNA4P22459 653 aa14.69□□□□□ -0.06
RDH11-205ENST00000553816 TOPBP1Q92547 1522 aa14.63□□□□□ -0.07
RDH11-205ENST00000553816 DNMBPQ6XZF7 1577 aa14.61□□□□□ -0.07
RDH11-205ENST00000553816 ZNF219Q9P2Y4 722 aaPredicted RBP14.57□□□□□ -0.08
RDH11-205ENST00000553816 ABCC8Q09428 1581 aa14.56□□□□□ -0.08
RDH11-205ENST00000553816 CUX1P39880 1505 aa14.55□□□□□ -0.08
RDH11-205ENST00000553816 TARBP1Q13395 1621 aaKnown RBP14.52□□□□□ -0.09
RDH11-205ENST00000553816 POLA1P09884 1462 aaPredicted RBP14.5□□□□□ -0.09
RDH11-205ENST00000553816 APLP2Q06481 763 aa14.5□□□□□ -0.09
RDH11-205ENST00000553816 ZNF608Q9ULD9 1512 aaPredicted RBP14.5□□□□□ -0.09
RDH11-205ENST00000553816 IFT140Q96RY7 1462 aa14.49□□□□□ -0.09
RDH11-205ENST00000553816 FGD5Q6ZNL6 1462 aa14.47□□□□□ -0.09
RDH11-205ENST00000553816 RAD54L2Q9Y4B4 1467 aa14.47□□□□□ -0.09
RDH11-205ENST00000553816 EIF4G3O43432 1585 aaKnown RBP14.45□□□□□ -0.1
RDH11-205ENST00000553816 SYNJ1O43426 1573 aa14.43□□□□□ -0.1
RDH11-205ENST00000553816 DNAJC5Q9H3Z4 198 aa14.43□□□□□ -0.1
RDH11-205ENST00000553816 WDR97A6NE52 1622 aa14.43□□□□□ -0.1
RDH11-205ENST00000553816 BIVM-ERCC5R4GMW8 1640 aa14.43□□□□□ -0.1
RDH11-205ENST00000553816 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.42□□□□□ -0.1
RDH11-205ENST00000553816 HNRNPUL2Q1KMD3 747 aaKnown RBP14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms