RNA–Protein interactions for RNA: ENST00000553622.5

CHD8-204, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

TSL 3

Gene CHD8, Length 633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-204ENST00000553622 NISCHQ9Y2I1 1504 aa22.8■■□□□ 1.24
CHD8-204ENST00000553622 CCDC180Q9P1Z9 1646 aa20.13■□□□□ 0.81
CHD8-204ENST00000553622 ABCC9O60706 1549 aa19.32■□□□□ 0.68
CHD8-204ENST00000553622 ZCCHC6Q5VYS8 1495 aaKnown RBP19.07■□□□□ 0.64
CHD8-204ENST00000553622 DCAF8L2P0C7V8 631 aa19.01■□□□□ 0.63
CHD8-204ENST00000553622 DCAF1Q9Y4B6 1507 aa18.82■□□□□ 0.6
CHD8-204ENST00000553622 NACADO15069 1562 aa18.78■□□□□ 0.6
CHD8-204ENST00000553622 RB1CC1Q8TDY2 1594 aa18.73■□□□□ 0.59
CHD8-204ENST00000553622 MYO15BQ96JP2 1530 aa18.71■□□□□ 0.59
CHD8-204ENST00000553622 SCRIBQ14160 1630 aa18.48■□□□□ 0.55
CHD8-204ENST00000553622 UNC13AQ9UPW8 1703 aa18.43■□□□□ 0.54
CHD8-204ENST00000553622 SHROOM4Q9ULL8 1493 aa18.42■□□□□ 0.54
CHD8-204ENST00000553622 BICRAQ9NZM4 1560 aa18.13■□□□□ 0.49
CHD8-204ENST00000553622 PABPN1Q86U42 306 aaKnown RBP eCLIP18.12■□□□□ 0.49
CHD8-204ENST00000553622 CECR2Q9BXF3 1484 aa17.73■□□□□ 0.43
CHD8-204ENST00000553622 BAZ1AQ9NRL2 1556 aaPredicted RBP17.66■□□□□ 0.42
CHD8-204ENST00000553622 SMARCA4P51532 1647 aa17.65■□□□□ 0.42
CHD8-204ENST00000553622 EIF4G1Q04637 1599 aaKnown RBP17.63■□□□□ 0.41
CHD8-204ENST00000553622 MROH2BQ7Z745 1585 aa17.61■□□□□ 0.41
CHD8-204ENST00000553622 SUPT5HO00267 1087 aaKnown RBP17.53■□□□□ 0.4
CHD8-204ENST00000553622 RSF1Q96T23 1441 aaPredicted RBP17.52■□□□□ 0.4
CHD8-204ENST00000553622 WIZO95785 1651 aa17.52■□□□□ 0.39
CHD8-204ENST00000553622 CC2D2AQ9P2K1 1620 aa17.49■□□□□ 0.39
CHD8-204ENST00000553622 SMARCA2P51531 1590 aa17.42■□□□□ 0.38
CHD8-204ENST00000553622 PEG3Q9GZU2 1588 aa17.39■□□□□ 0.37
CHD8-204ENST00000553622 ATAD2BQ9ULI0 1458 aa17.38■□□□□ 0.37
CHD8-204ENST00000553622 BAZ1BQ9UIG0 1483 aaKnown RBP17.32■□□□□ 0.36
CHD8-204ENST00000553622 TOP2AP11388 1531 aaKnown RBP17.28■□□□□ 0.36
CHD8-204ENST00000553622 HMGXB3Q12766 1538 aa17.27■□□□□ 0.36
CHD8-204ENST00000553622 NCAPD3P42695 1498 aa17.27■□□□□ 0.36
CHD8-204ENST00000553622 DNAJC5BQ9UF47 199 aa17.27■□□□□ 0.36
CHD8-204ENST00000553622 CCDC88BA6NC98 1476 aa17.06■□□□□ 0.32
CHD8-204ENST00000553622 PRDM2Q13029 1718 aa16.89■□□□□ 0.29
CHD8-204ENST00000553622 NESP48681 1621 aa16.83■□□□□ 0.28
CHD8-204ENST00000553622 CADPSQ9ULU8 1353 aa16.82■□□□□ 0.28
CHD8-204ENST00000553622 LAMC3Q9Y6N6 1575 aa16.81■□□□□ 0.28
CHD8-204ENST00000553622 CFTRP13569 1480 aa16.8■□□□□ 0.28
CHD8-204ENST00000553622 KIF21AQ7Z4S6 1674 aa16.72■□□□□ 0.27
CHD8-204ENST00000553622 FANCD2Q9BXW9 1451 aa16.67■□□□□ 0.26
CHD8-204ENST00000553622 PDS5BQ9NTI5 1447 aa16.67■□□□□ 0.26
CHD8-204ENST00000553622 ABCC8Q09428 1581 aa16.65■□□□□ 0.26
CHD8-204ENST00000553622 ERCC6Q03468 1493 aa16.63■□□□□ 0.25
CHD8-204ENST00000553622 CEP164Q9UPV0 1460 aa16.62■□□□□ 0.25
CHD8-204ENST00000553622 WRNQ14191 1432 aaPredicted RBP eCLIP16.54■□□□□ 0.24
CHD8-204ENST00000553622 CHIC1Q5VXU3 224 aa16.53■□□□□ 0.24
CHD8-204ENST00000553622 SYNJ1O43426 1573 aa16.52■□□□□ 0.24
CHD8-204ENST00000553622 CUX1P39880 1505 aa16.5■□□□□ 0.23
CHD8-204ENST00000553622 MRC2Q9UBG0 1479 aa16.5■□□□□ 0.23
CHD8-204ENST00000553622 DNMBPQ6XZF7 1577 aa16.49■□□□□ 0.23
CHD8-204ENST00000553622 TRIM41Q8WV44 630 aa16.49■□□□□ 0.23
CHD8-204ENST00000553622 BIVM-ERCC5R4GMW8 1640 aa16.48■□□□□ 0.23
CHD8-204ENST00000553622 URB2Q14146 1524 aaKnown RBP16.48■□□□□ 0.23
CHD8-204ENST00000553622 THOC2Q8NI27 1593 aaKnown RBP16.47■□□□□ 0.23
CHD8-204ENST00000553622 TOP2BQ02880 1626 aa16.47■□□□□ 0.23
CHD8-204ENST00000553622 TOPBP1Q92547 1522 aa16.46■□□□□ 0.23
CHD8-204ENST00000553622 WDR62O43379 1518 aa16.42■□□□□ 0.22
CHD8-204ENST00000553622 FGD5Q6ZNL6 1462 aa16.39■□□□□ 0.21
CHD8-204ENST00000553622 POLA1P09884 1462 aaPredicted RBP16.33■□□□□ 0.2
CHD8-204ENST00000553622 RAD54L2Q9Y4B4 1467 aa16.29■□□□□ 0.2
CHD8-204ENST00000553622 SOGA1O94964 1423 aa16.28■□□□□ 0.2
CHD8-204ENST00000553622 WDR97A6NE52 1622 aa16.26■□□□□ 0.19
CHD8-204ENST00000553622 CUX2O14529 1486 aa16.25■□□□□ 0.19
CHD8-204ENST00000553622 TARBP1Q13395 1621 aaKnown RBP16.25■□□□□ 0.19
CHD8-204ENST00000553622 IFT140Q96RY7 1462 aa16.22■□□□□ 0.19
CHD8-204ENST00000553622 FAM9AQ8IZU1 332 aaPredicted RBP16.21■□□□□ 0.19
CHD8-204ENST00000553622 ABCA10Q8WWZ4 1543 aa16.2■□□□□ 0.18
CHD8-204ENST00000553622 RUSC2Q8N2Y8 1516 aa16.18■□□□□ 0.18
CHD8-204ENST00000553622 KIF27Q86VH2 1401 aa16.17■□□□□ 0.18
CHD8-204ENST00000553622 TDRD9Q8NDG6 1382 aaKnown RBP16.15■□□□□ 0.18
CHD8-204ENST00000553622 PBRM1Q86U86 1689 aa16.15■□□□□ 0.18
CHD8-204ENST00000553622 ABCA5Q8WWZ7 1642 aa16.15■□□□□ 0.18
CHD8-204ENST00000553622 ZNF608Q9ULD9 1512 aaPredicted RBP16.14■□□□□ 0.18
CHD8-204ENST00000553622 EIF4G3O43432 1585 aaKnown RBP16.14■□□□□ 0.17
CHD8-204ENST00000553622 AQRO60306 1485 aaKnown RBP eCLIP16.11■□□□□ 0.17
CHD8-204ENST00000553622 GAPVD1Q14C86 1478 aa16.11■□□□□ 0.17
CHD8-204ENST00000553622 EEA1Q15075 1411 aa16.11■□□□□ 0.17
CHD8-204ENST00000553622 CSRNP3Q8WYN3 585 aa16.04■□□□□ 0.16
CHD8-204ENST00000553622 EHMT2Q96KQ7 1210 aa16.04■□□□□ 0.16
CHD8-204ENST00000553622 GRIN2BQ13224 1484 aa16.03■□□□□ 0.16
CHD8-204ENST00000553622 ERICH3Q5RHP9 1530 aa16.03■□□□□ 0.16
CHD8-204ENST00000553622 CUL7Q14999 1698 aa16.02■□□□□ 0.16
CHD8-204ENST00000553622 IGF1RP08069 1367 aa16■□□□□ 0.15
CHD8-204ENST00000553622 SNAPC4Q5SXM2 1469 aa15.99■□□□□ 0.15
CHD8-204ENST00000553622 ADAMTS12P58397 1594 aa15.97■□□□□ 0.15
CHD8-204ENST00000553622 KIF21BO75037 1637 aa15.97■□□□□ 0.15
CHD8-204ENST00000553622 CARMIL1Q5VZK9 1371 aa15.96■□□□□ 0.15
CHD8-204ENST00000553622 MAGI1Q96QZ7 1491 aaPredicted RBP15.94■□□□□ 0.14
CHD8-204ENST00000553622 CHD1O14646 1710 aa15.94■□□□□ 0.14
CHD8-204ENST00000553622 PRXQ9BXM0 1461 aa15.91■□□□□ 0.14
CHD8-204ENST00000553622 RAPGEF2Q9Y4G8 1499 aa15.91■□□□□ 0.14
CHD8-204ENST00000553622 LOC105371045A0A1W2PR82 267 aa15.91■□□□□ 0.14
CHD8-204ENST00000553622 FHAD1B1AJZ9 1412 aa15.91■□□□□ 0.14
CHD8-204ENST00000553622 GOLGA3Q08378 1498 aa15.91■□□□□ 0.14
CHD8-204ENST00000553622 FBLN2P98095 1184 aa15.9■□□□□ 0.14
CHD8-204ENST00000553622 SYNJ2O15056 1496 aa15.88■□□□□ 0.13
CHD8-204ENST00000553622 UBTFP17480 764 aaKnown RBP15.87■□□□□ 0.13
CHD8-204ENST00000553622 CHMP7Q8WUX9 453 aaPredicted RBP15.87■□□□□ 0.13
CHD8-204ENST00000553622 CTTNBP2Q8WZ74 1663 aa15.86■□□□□ 0.13
CHD8-204ENST00000553622 GRIN2AQ12879 1464 aa15.84■□□□□ 0.13
CHD8-204ENST00000553622 RANGAP1P46060 587 aaPredicted RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms