RNA–Protein interactions for RNA: ENST00000552645.5

LETMD1-234, Transcript of LETM1 domain containing 1, humanhuman

TSL 1 (best)

Gene LETMD1, Length 1,623 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-234ENST00000552645 NISCHQ9Y2I1 1504 aa23.71■■□□□ 1.39
LETMD1-234ENST00000552645 CCDC180Q9P1Z9 1646 aa21.02■□□□□ 0.96
LETMD1-234ENST00000552645 ABCC9O60706 1549 aa20.51■□□□□ 0.87
LETMD1-234ENST00000552645 DCAF8L2P0C7V8 631 aa19.91■□□□□ 0.78
LETMD1-234ENST00000552645 ZCCHC6Q5VYS8 1495 aaKnown RBP19.76■□□□□ 0.75
LETMD1-234ENST00000552645 RB1CC1Q8TDY2 1594 aa19.73■□□□□ 0.75
LETMD1-234ENST00000552645 NACADO15069 1562 aa19.71■□□□□ 0.75
LETMD1-234ENST00000552645 MYO15BQ96JP2 1530 aa19.56■□□□□ 0.72
LETMD1-234ENST00000552645 DCAF1Q9Y4B6 1507 aa19.56■□□□□ 0.72
LETMD1-234ENST00000552645 UNC13AQ9UPW8 1703 aa19.35■□□□□ 0.69
LETMD1-234ENST00000552645 SCRIBQ14160 1630 aa19.28■□□□□ 0.68
LETMD1-234ENST00000552645 PABPN1Q86U42 306 aaKnown RBP eCLIP19.2■□□□□ 0.66
LETMD1-234ENST00000552645 BICRAQ9NZM4 1560 aa19.11■□□□□ 0.65
LETMD1-234ENST00000552645 SHROOM4Q9ULL8 1493 aa18.95■□□□□ 0.62
LETMD1-234ENST00000552645 DNAJC5BQ9UF47 199 aa18.65■□□□□ 0.58
LETMD1-234ENST00000552645 EIF4G1Q04637 1599 aaKnown RBP18.62■□□□□ 0.57
LETMD1-234ENST00000552645 CC2D2AQ9P2K1 1620 aa18.53■□□□□ 0.56
LETMD1-234ENST00000552645 CECR2Q9BXF3 1484 aa18.48■□□□□ 0.55
LETMD1-234ENST00000552645 SMARCA4P51532 1647 aa18.39■□□□□ 0.53
LETMD1-234ENST00000552645 BAZ1AQ9NRL2 1556 aaPredicted RBP18.38■□□□□ 0.53
LETMD1-234ENST00000552645 MROH2BQ7Z745 1585 aa18.3■□□□□ 0.52
LETMD1-234ENST00000552645 ATAD2BQ9ULI0 1458 aa18.22■□□□□ 0.51
LETMD1-234ENST00000552645 SMARCA2P51531 1590 aa18.22■□□□□ 0.51
LETMD1-234ENST00000552645 NCAPD3P42695 1498 aa18.16■□□□□ 0.5
LETMD1-234ENST00000552645 WIZO95785 1651 aa18.16■□□□□ 0.5
LETMD1-234ENST00000552645 PEG3Q9GZU2 1588 aa18.14■□□□□ 0.49
LETMD1-234ENST00000552645 BAZ1BQ9UIG0 1483 aaKnown RBP18.12■□□□□ 0.49
LETMD1-234ENST00000552645 RSF1Q96T23 1441 aaPredicted RBP18.12■□□□□ 0.49
LETMD1-234ENST00000552645 HMGXB3Q12766 1538 aa18.1■□□□□ 0.49
LETMD1-234ENST00000552645 TOP2AP11388 1531 aaKnown RBP17.91■□□□□ 0.46
LETMD1-234ENST00000552645 SUPT5HO00267 1087 aaKnown RBP17.9■□□□□ 0.46
LETMD1-234ENST00000552645 NESP48681 1621 aa17.78■□□□□ 0.44
LETMD1-234ENST00000552645 CCDC88BA6NC98 1476 aa17.71■□□□□ 0.43
LETMD1-234ENST00000552645 LAMC3Q9Y6N6 1575 aa17.7■□□□□ 0.42
LETMD1-234ENST00000552645 ERCC6Q03468 1493 aa17.67■□□□□ 0.42
LETMD1-234ENST00000552645 CADPSQ9ULU8 1353 aa17.67■□□□□ 0.42
LETMD1-234ENST00000552645 KIF21AQ7Z4S6 1674 aa17.59■□□□□ 0.41
LETMD1-234ENST00000552645 CFTRP13569 1480 aa17.59■□□□□ 0.41
LETMD1-234ENST00000552645 PDS5BQ9NTI5 1447 aa17.59■□□□□ 0.41
LETMD1-234ENST00000552645 PRDM2Q13029 1718 aa17.54■□□□□ 0.4
LETMD1-234ENST00000552645 FANCD2Q9BXW9 1451 aa17.5■□□□□ 0.39
LETMD1-234ENST00000552645 CEP164Q9UPV0 1460 aa17.47■□□□□ 0.39
LETMD1-234ENST00000552645 THOC2Q8NI27 1593 aaKnown RBP17.44■□□□□ 0.38
LETMD1-234ENST00000552645 MRC2Q9UBG0 1479 aa17.4■□□□□ 0.38
LETMD1-234ENST00000552645 CUX2O14529 1486 aa17.34■□□□□ 0.37
LETMD1-234ENST00000552645 WDR62O43379 1518 aa17.32■□□□□ 0.36
LETMD1-234ENST00000552645 URB2Q14146 1524 aaKnown RBP17.31■□□□□ 0.36
LETMD1-234ENST00000552645 TOPBP1Q92547 1522 aa17.23■□□□□ 0.35
LETMD1-234ENST00000552645 DNMBPQ6XZF7 1577 aa17.22■□□□□ 0.35
LETMD1-234ENST00000552645 ABCC8Q09428 1581 aa17.2■□□□□ 0.34
LETMD1-234ENST00000552645 CUX1P39880 1505 aa17.16■□□□□ 0.34
LETMD1-234ENST00000552645 WRNQ14191 1432 aaPredicted RBP eCLIP17.1■□□□□ 0.33
LETMD1-234ENST00000552645 POLA1P09884 1462 aaPredicted RBP17.09■□□□□ 0.33
LETMD1-234ENST00000552645 FGD5Q6ZNL6 1462 aa17.09■□□□□ 0.33
LETMD1-234ENST00000552645 SYNJ1O43426 1573 aa17.07■□□□□ 0.32
LETMD1-234ENST00000552645 IFT140Q96RY7 1462 aa17.07■□□□□ 0.32
LETMD1-234ENST00000552645 RAD54L2Q9Y4B4 1467 aa17.04■□□□□ 0.32
LETMD1-234ENST00000552645 TOP2BQ02880 1626 aa17.04■□□□□ 0.32
LETMD1-234ENST00000552645 BIVM-ERCC5R4GMW8 1640 aa17.04■□□□□ 0.32
LETMD1-234ENST00000552645 SOGA1O94964 1423 aa17.04■□□□□ 0.32
LETMD1-234ENST00000552645 TARBP1Q13395 1621 aaKnown RBP17.03■□□□□ 0.32
LETMD1-234ENST00000552645 ZNF608Q9ULD9 1512 aaPredicted RBP17.02■□□□□ 0.31
LETMD1-234ENST00000552645 EIF4G3O43432 1585 aaKnown RBP16.97■□□□□ 0.31
LETMD1-234ENST00000552645 TDRD9Q8NDG6 1382 aaKnown RBP16.94■□□□□ 0.3
LETMD1-234ENST00000552645 AQRO60306 1485 aaKnown RBP eCLIP16.94■□□□□ 0.31e-6■■□□□ 13.5
LETMD1-234ENST00000552645 WDR97A6NE52 1622 aa16.93■□□□□ 0.3
LETMD1-234ENST00000552645 ABCA10Q8WWZ4 1543 aa16.89■□□□□ 0.29
LETMD1-234ENST00000552645 GAPVD1Q14C86 1478 aa16.85■□□□□ 0.29
LETMD1-234ENST00000552645 TRIM41Q8WV44 630 aa16.85■□□□□ 0.29
LETMD1-234ENST00000552645 PBRM1Q86U86 1689 aa16.84■□□□□ 0.29
LETMD1-234ENST00000552645 ABCA5Q8WWZ7 1642 aa16.83■□□□□ 0.28
LETMD1-234ENST00000552645 GRIN2BQ13224 1484 aa16.81■□□□□ 0.28
LETMD1-234ENST00000552645 FBLN2P98095 1184 aa16.79■□□□□ 0.28
LETMD1-234ENST00000552645 SNAPC4Q5SXM2 1469 aa16.79■□□□□ 0.28
LETMD1-234ENST00000552645 CHD1O14646 1710 aa16.77■□□□□ 0.27
LETMD1-234ENST00000552645 MAGI1Q96QZ7 1491 aaPredicted RBP16.73■□□□□ 0.27
LETMD1-234ENST00000552645 KIF27Q86VH2 1401 aa16.73■□□□□ 0.27
LETMD1-234ENST00000552645 CHMP7Q8WUX9 453 aaPredicted RBP16.71■□□□□ 0.27
LETMD1-234ENST00000552645 OSCARQ8IYS5 282 aa16.7■□□□□ 0.26
LETMD1-234ENST00000552645 CHIC1Q5VXU3 224 aa16.7■□□□□ 0.26
LETMD1-234ENST00000552645 ERICH3Q5RHP9 1530 aa16.69■□□□□ 0.26
LETMD1-234ENST00000552645 SYNJ2O15056 1496 aa16.68■□□□□ 0.26
LETMD1-234ENST00000552645 ADAMTS12P58397 1594 aa16.67■□□□□ 0.26
LETMD1-234ENST00000552645 DNAJC5Q9H3Z4 198 aa16.67■□□□□ 0.26
LETMD1-234ENST00000552645 RUSC2Q8N2Y8 1516 aa16.66■□□□□ 0.26
LETMD1-234ENST00000552645 FHAD1B1AJZ9 1412 aa16.63■□□□□ 0.25
LETMD1-234ENST00000552645 IGF1RP08069 1367 aa16.62■□□□□ 0.25
LETMD1-234ENST00000552645 CUL7Q14999 1698 aa16.6■□□□□ 0.25
LETMD1-234ENST00000552645 GRIN2AQ12879 1464 aa16.6■□□□□ 0.25
LETMD1-234ENST00000552645 FAM9AQ8IZU1 332 aaPredicted RBP16.56■□□□□ 0.24
LETMD1-234ENST00000552645 CARMIL1Q5VZK9 1371 aa16.55■□□□□ 0.24
LETMD1-234ENST00000552645 CEP170Q5SW79 1584 aa16.52■□□□□ 0.24
LETMD1-234ENST00000552645 CLASP1Q7Z460 1538 aa16.5■□□□□ 0.23
LETMD1-234ENST00000552645 CSRNP3Q8WYN3 585 aa16.48■□□□□ 0.23
LETMD1-234ENST00000552645 NUP160Q12769 1436 aa16.48■□□□□ 0.23
LETMD1-234ENST00000552645 EEA1Q15075 1411 aa16.47■□□□□ 0.23
LETMD1-234ENST00000552645 RAPGEF2Q9Y4G8 1499 aa16.47■□□□□ 0.23
LETMD1-234ENST00000552645 RIMBP3CA6NJZ7 1639 aa16.44■□□□□ 0.22
LETMD1-234ENST00000552645 RIMBP3BA6NNM3 1639 aa16.44■□□□□ 0.22
LETMD1-234ENST00000552645 RIMBP3Q9UFD9 1639 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms