RNA–Protein interactions for RNA: ENST00000550471.1

GCN1-207, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 3

Gene GCN1, Length 918 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-207ENST00000550471 NISCHQ9Y2I1 1504 aa49.19■■■■■ 5.47
GCN1-207ENST00000550471 CCDC180Q9P1Z9 1646 aa44.03■■■■■ 4.64
GCN1-207ENST00000550471 ABCC9O60706 1549 aa43.48■■■■■ 4.55
GCN1-207ENST00000550471 RB1CC1Q8TDY2 1594 aa41.74■■■■■ 4.27
GCN1-207ENST00000550471 NACADO15069 1562 aa41.59■■■■■ 4.25
GCN1-207ENST00000550471 DCAF8L2P0C7V8 631 aa41.27■■■■■ 4.2
GCN1-207ENST00000550471 MYO15BQ96JP2 1530 aa41.24■■■■■ 4.19
GCN1-207ENST00000550471 ZCCHC6Q5VYS8 1495 aaKnown RBP40.85■■■■■ 4.13
GCN1-207ENST00000550471 DCAF1Q9Y4B6 1507 aa40.81■■■■■ 4.12
GCN1-207ENST00000550471 UNC13AQ9UPW8 1703 aa40.55■■■■■ 4.08
GCN1-207ENST00000550471 PABPN1Q86U42 306 aaKnown RBP eCLIP40.51■■■■■ 4.08
GCN1-207ENST00000550471 DNAJC5BQ9UF47 199 aa40.34■■■■■ 4.05
GCN1-207ENST00000550471 BICRAQ9NZM4 1560 aa40.33■■■■■ 4.05
GCN1-207ENST00000550471 SHROOM4Q9ULL8 1493 aa40.19■■■■■ 4.02
GCN1-207ENST00000550471 SCRIBQ14160 1630 aa39.96■■■■□ 3.99
GCN1-207ENST00000550471 EIF4G1Q04637 1599 aaKnown RBP39.39■■■■□ 3.9
GCN1-207ENST00000550471 CC2D2AQ9P2K1 1620 aa39.33■■■■□ 3.89
GCN1-207ENST00000550471 CECR2Q9BXF3 1484 aa39.23■■■■□ 3.87
GCN1-207ENST00000550471 NCAPD3P42695 1498 aa38.37■■■■□ 3.73
GCN1-207ENST00000550471 SMARCA4P51532 1647 aa38.25■■■■□ 3.71
GCN1-207ENST00000550471 SMARCA2P51531 1590 aa38.24■■■■□ 3.71
GCN1-207ENST00000550471 BAZ1AQ9NRL2 1556 aaPredicted RBP38.23■■■■□ 3.71
GCN1-207ENST00000550471 ATAD2BQ9ULI0 1458 aa38.22■■■■□ 3.71
GCN1-207ENST00000550471 HMGXB3Q12766 1538 aa38.12■■■■□ 3.69
GCN1-207ENST00000550471 PEG3Q9GZU2 1588 aa37.97■■■■□ 3.67
GCN1-207ENST00000550471 BAZ1BQ9UIG0 1483 aaKnown RBP37.9■■■■□ 3.66
GCN1-207ENST00000550471 MROH2BQ7Z745 1585 aa37.8■■■■□ 3.64
GCN1-207ENST00000550471 ERCC6Q03468 1493 aa37.64■■■■□ 3.62
GCN1-207ENST00000550471 CUX2O14529 1486 aa37.52■■■■□ 3.6
GCN1-207ENST00000550471 LAMC3Q9Y6N6 1575 aa37.43■■■■□ 3.58
GCN1-207ENST00000550471 NESP48681 1621 aa37.4■■■■□ 3.58
GCN1-207ENST00000550471 WIZO95785 1651 aa37.33■■■■□ 3.57
GCN1-207ENST00000550471 PDS5BQ9NTI5 1447 aa37.27■■■■□ 3.56
GCN1-207ENST00000550471 RSF1Q96T23 1441 aaPredicted RBP37.24■■■■□ 3.55
GCN1-207ENST00000550471 CADPSQ9ULU8 1353 aa37.21■■■■□ 3.55
GCN1-207ENST00000550471 TOP2AP11388 1531 aaKnown RBP37.03■■■■□ 3.52
GCN1-207ENST00000550471 THOC2Q8NI27 1593 aaKnown RBP37.03■■■■□ 3.52
GCN1-207ENST00000550471 DNAJC5Q9H3Z4 198 aa36.99■■■■□ 3.51
GCN1-207ENST00000550471 KIF21AQ7Z4S6 1674 aa36.95■■■■□ 3.51
GCN1-207ENST00000550471 CFTRP13569 1480 aa36.85■■■■□ 3.49
GCN1-207ENST00000550471 MRC2Q9UBG0 1479 aa36.82■■■■□ 3.49
GCN1-207ENST00000550471 CEP164Q9UPV0 1460 aa36.76■■■■□ 3.48
GCN1-207ENST00000550471 FANCD2Q9BXW9 1451 aa36.72■■■■□ 3.47
GCN1-207ENST00000550471 WDR62O43379 1518 aa36.7■■■■□ 3.47
GCN1-207ENST00000550471 CCDC88BA6NC98 1476 aa36.56■■■■□ 3.44
GCN1-207ENST00000550471 PRDM2Q13029 1718 aa36.45■■■■□ 3.43
GCN1-207ENST00000550471 URB2Q14146 1524 aaKnown RBP36.32■■■■□ 3.4
GCN1-207ENST00000550471 ABCC8Q09428 1581 aa36.22■■■■□ 3.39
GCN1-207ENST00000550471 IFT140Q96RY7 1462 aa36.06■■■■□ 3.36
GCN1-207ENST00000550471 TOPBP1Q92547 1522 aa36.05■■■■□ 3.36
GCN1-207ENST00000550471 DNMBPQ6XZF7 1577 aa35.99■■■■□ 3.35
GCN1-207ENST00000550471 OSCARQ8IYS5 282 aa35.88■■■■□ 3.33
GCN1-207ENST00000550471 SUPT5HO00267 1087 aaKnown RBP35.81■■■■□ 3.32
GCN1-207ENST00000550471 ZNF608Q9ULD9 1512 aaPredicted RBP35.77■■■■□ 3.32
GCN1-207ENST00000550471 POLA1P09884 1462 aaPredicted RBP35.7■■■■□ 3.31
GCN1-207ENST00000550471 TARBP1Q13395 1621 aaKnown RBP35.66■■■■□ 3.3
GCN1-207ENST00000550471 EIF4G3O43432 1585 aaKnown RBP35.64■■■■□ 3.3
GCN1-207ENST00000550471 SOGA1O94964 1423 aa35.6■■■■□ 3.29
GCN1-207ENST00000550471 WDR97A6NE52 1622 aa35.57■■■■□ 3.28
GCN1-207ENST00000550471 AQRO60306 1485 aaKnown RBP eCLIP35.53■■■■□ 3.281e-7■■■■□ 23.6
GCN1-207ENST00000550471 FGD5Q6ZNL6 1462 aa35.52■■■■□ 3.28
GCN1-207ENST00000550471 CUX1P39880 1505 aa35.52■■■■□ 3.28
GCN1-207ENST00000550471 RAD54L2Q9Y4B4 1467 aa35.48■■■■□ 3.27
GCN1-207ENST00000550471 TDRD9Q8NDG6 1382 aaKnown RBP35.39■■■■□ 3.26
GCN1-207ENST00000550471 TRIM41Q8WV44 630 aa35.39■■■■□ 3.26
GCN1-207ENST00000550471 GRIN2BQ13224 1484 aa35.29■■■■□ 3.24
GCN1-207ENST00000550471 MAGI1Q96QZ7 1491 aaPredicted RBP35.28■■■■□ 3.24
GCN1-207ENST00000550471 FBLN2P98095 1184 aa35.27■■■■□ 3.24
GCN1-207ENST00000550471 CHD1O14646 1710 aa35.24■■■■□ 3.23
GCN1-207ENST00000550471 ABCA10Q8WWZ4 1543 aa35.22■■■■□ 3.23
GCN1-207ENST00000550471 SNAPC4Q5SXM2 1469 aa35.22■■■■□ 3.23
GCN1-207ENST00000550471 WRNQ14191 1432 aaPredicted RBP eCLIP35.21■■■■□ 3.23
GCN1-207ENST00000550471 RIMBP3CA6NJZ7 1639 aa35.18■■■■□ 3.22
GCN1-207ENST00000550471 RIMBP3BA6NNM3 1639 aa35.18■■■■□ 3.22
GCN1-207ENST00000550471 RIMBP3Q9UFD9 1639 aa35.18■■■■□ 3.22
GCN1-207ENST00000550471 CHMP7Q8WUX9 453 aaPredicted RBP35.18■■■■□ 3.22
GCN1-207ENST00000550471 GAPVD1Q14C86 1478 aa35.17■■■■□ 3.22
GCN1-207ENST00000550471 ARHGEF11O15085 1522 aa35.16■■■■□ 3.22
GCN1-207ENST00000550471 TOP2BQ02880 1626 aa35.14■■■■□ 3.22
GCN1-207ENST00000550471 SYNJ2O15056 1496 aa35.12■■■■□ 3.21
GCN1-207ENST00000550471 BIVM-ERCC5R4GMW8 1640 aa35.1■■■■□ 3.21
GCN1-207ENST00000550471 ABCA5Q8WWZ7 1642 aa35.06■■■■□ 3.2
GCN1-207ENST00000550471 SYNJ1O43426 1573 aa35.05■■■■□ 3.2
GCN1-207ENST00000550471 PBRM1Q86U86 1689 aa35.03■■■■□ 3.2
GCN1-207ENST00000550471 CLASP1Q7Z460 1538 aa34.95■■■■□ 3.19
GCN1-207ENST00000550471 CYB5RLQ6IPT4 315 aa34.88■■■■□ 3.17
GCN1-207ENST00000550471 ERICH3Q5RHP9 1530 aa34.83■■■■□ 3.17
GCN1-207ENST00000550471 ARAP1Q96P48 1450 aa34.81■■■■□ 3.16
GCN1-207ENST00000550471 FHAD1B1AJZ9 1412 aa34.8■■■■□ 3.16
GCN1-207ENST00000550471 GRIN2AQ12879 1464 aa34.78■■■■□ 3.16
GCN1-207ENST00000550471 ADAMTS12P58397 1594 aa34.77■■■■□ 3.16
GCN1-207ENST00000550471 NUP160Q12769 1436 aa34.67■■■■□ 3.14
GCN1-207ENST00000550471 KIF27Q86VH2 1401 aa34.55■■■■□ 3.12
GCN1-207ENST00000550471 CEP170Q5SW79 1584 aa34.53■■■■□ 3.12
GCN1-207ENST00000550471 SHROOM2Q13796 1616 aa34.43■■■■□ 3.1
GCN1-207ENST00000550471 IGF1RP08069 1367 aa34.41■■■■□ 3.1
GCN1-207ENST00000550471 TRHP20396 242 aaPredicted RBP34.4■■■■□ 3.1
GCN1-207ENST00000550471 CUL7Q14999 1698 aa34.38■■■■□ 3.09
GCN1-207ENST00000550471 JPH4Q96JJ6 628 aa34.34■■■■□ 3.09
GCN1-207ENST00000550471 PRG4Q92954 1404 aaPredicted RBP34.28■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms